Plant FIBer expression Database

Potri.011G062500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G34040 782 / 0 Apoptosis inhibitory protein 5 (API5) (.1), Apoptosis inhibitory protein 5 (API5) (.2)
AT1G29030 754 / 0 Apoptosis inhibitory protein 5 (API5) (.1)
AT3G19515 213 / 5e-60 unknown protein
AT1G23935 186 / 1e-50 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G052300
[exp]
988 / 0 AT2G34040 787 / 0.0 Apoptosis inhibitory protein 5 (API5) (.1), Apoptosis inhibitory protein 5 (API5) (.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10025428
[exp]
818 / 0 AT2G34040 769 / 0.0 Apoptosis inhibitory protein 5 (API5) (.1), Apoptosis inhibitory protein 5 (API5) (.2)
Lus10013953
[exp]
814 / 0 AT2G34040 763 / 0.0 Apoptosis inhibitory protein 5 (API5) (.1), Apoptosis inhibitory protein 5 (API5) (.2)
Lus10005277
[exp]
796 / 0 AT2G34040 763 / 0.0 Apoptosis inhibitory protein 5 (API5) (.1), Apoptosis inhibitory protein 5 (API5) (.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0020 TPR PF05918 API5 Apoptosis inhibitory protein 5 (API5)
Representative CDS sequence
>Potri.011G062500.3 pacid=42780927 polypeptide=Potri.011G062500.3.p locus=Potri.011G062500 ID=Potri.011G062500.3.v4.1 annot-version=v4.1
ATGAGCGACCCTGCCGCCAGCGCCACCGCCACCGACGACGCCAGCCACATCGAGAAGCTCTACGAGTTTGGCGAGCGACTCAGTGAGTCCAAAGACAAGT
CTCAGAATGTGAAGGATTACCAGGGGATTATGGATGCAGCAAAAACGAGCATAAAAGCGAAGCAATTGGCGGCACAGTTAATCCCGAGGTTCTTCAAGTT
CTTCCCTGAGCTTTCCAGTCAAGCTGTCGAGACGCAAATCGATTTGATTGAACAAGAAGAGCTCGGGGTCCGGGTGCAAGCGATTAGGGGACTGCCGCTA
TTTTGCAAGGATACGCCGGAGTATTTGTCAAAAATTGTGGATATTCTTGTGCAACTCCTTGCAGCTGAGGAAATTGTGGAGCGGGATGCAGTGCTTAAAG
CCCTTATGTCCCTGTTGAGGCAGGATGTGAAAGCATCGTTGTCTGCCTTATTTAAGCATATTGGGACTGTTGAAGAACCAAGCACGGATGAGCTTATTCG
CGAGAAGGTTCTGAGCTTTGTAAGAGATAAGGTTTTCCCACTCAAAGGTGAACTCCTGAGACCTCAAGAGGAAATGGAGCATCATATAACTGATTTGATT
AAAAAGAGTTCAGAAGATGTAACTGGAGCGGAGTTCAGAATGTTTATGGACTTCTTAAAAAAATTGAGCATATTTGGAGACAAAGCTCCTTCTGAACGCA
TGAAAGAGCTAGTTGGAATCATTGAAGGACAGGCTGATCTAGATTCAGCATTTGATGTGACTCATGTTTCGGATACAGACCATATTGACAGATTGATATC
ATGCCTGTATATGGCACTTCCATTTTTCCTGAGGGGTGCATCGAGCAGCAGGTTCCTCAATTATTTGAACAAACACATCATTCCCGTTTTTGACAAGTTT
CCTGAGGAGCGGAAGCTTGATTTGCTCAAAGCACTTGCAGAAATATCACCTTTTACATTACCACAGGATTCACGCCAGATTCTTCCCTCTGTTGTTCAGC
TTTTGAAGAAATACATGCCACGGAGGAAGAGCGGAGAAGAGATGAACTTTACATACGTTGAGTGCTTGTTATATGCGTTTCATCACTTAGCTCATAAGGC
TCCAAATGCTACAAACAGCCTGTGTGGTTACAAGATTGTGACTGGGCAGCCATCAGACCATCTTGGGGAGGACTTCTCTGAGTTTTACACTGACCTGACA
GAGAGGTTGAGTAGTGTAGAAGATCTAACCAGGGCTACCATGAAAAAGTTAACTCAGGGAATGGCTGAACACAACAAAGCAATGGCAGCTGCGAAGTCTG
ATGAAGCAAAGGATAGCATAAAAACACAAAAACAGAATACTACAACTGGGTTGCGTACTTGCAATAACATTTTGGCAATGACAAAGCCATTGCATTCAAA
GACACCGTTGTTTATTGGAGATAAGAGTATCAACCTCTCTTGGAAAGAAGTAGCAAAACCTTCTGTGCCTTCCACTACCGTCTCAGCTGGAGGGAAACGA
CCTGCCGCCACTGCCAATGGTTCCGGGAACATGGAAAAAAAGGGTCGCTGGGCTGGTGGCGTGCAAAATCAACTTGTTAATAGGGCACTGGAAGGTATAT
CTTATGGTGGAAGGGGCAGTCCAAGGGGCAGGGGCAGGGGGTGGGGTGGACGTGGAAGAGGAAGAAGCTTTCGGTAA
AA sequence
>Potri.011G062500.3 pacid=42780927 polypeptide=Potri.011G062500.3.p locus=Potri.011G062500 ID=Potri.011G062500.3.v4.1 annot-version=v4.1
MSDPAASATATDDASHIEKLYEFGERLSESKDKSQNVKDYQGIMDAAKTSIKAKQLAAQLIPRFFKFFPELSSQAVETQIDLIEQEELGVRVQAIRGLPL
FCKDTPEYLSKIVDILVQLLAAEEIVERDAVLKALMSLLRQDVKASLSALFKHIGTVEEPSTDELIREKVLSFVRDKVFPLKGELLRPQEEMEHHITDLI
KKSSEDVTGAEFRMFMDFLKKLSIFGDKAPSERMKELVGIIEGQADLDSAFDVTHVSDTDHIDRLISCLYMALPFFLRGASSSRFLNYLNKHIIPVFDKF
PEERKLDLLKALAEISPFTLPQDSRQILPSVVQLLKKYMPRRKSGEEMNFTYVECLLYAFHHLAHKAPNATNSLCGYKIVTGQPSDHLGEDFSEFYTDLT
ERLSSVEDLTRATMKKLTQGMAEHNKAMAAAKSDEAKDSIKTQKQNTTTGLRTCNNILAMTKPLHSKTPLFIGDKSINLSWKEVAKPSVPSTTVSAGGKR
PAATANGSGNMEKKGRWAGGVQNQLVNRALEGISYGGRGSPRGRGRGWGGRGRGRSFR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G34040 Apoptosis inhibitory protein 5... Potri.011G062500
[exp]
0 1
AT3G33520 SUF3, ESD1, ATA... SUPPRESSOR OF FRI 3, EARLY IN ... Potri.018G128300
[exp]
1.73 0.8081 ARP6.1,ARP906
AT1G20220 Alba DNA/RNA-binding protein (... Potri.005G194600
[exp]
6.00 0.7650
AT3G21465 unknown protein Potri.008G205300
[exp]
7.34 0.7953
AT1G09280 unknown protein Potri.005G011300
[exp]
8.48 0.7205
AT4G11160 Translation initiation factor ... Potri.001G095500
[exp]
10.09 0.7625
AT1G18600 ATRBL12 ARABIDOPSIS RHOMBOID-LIKE PROT... Potri.006G227300
[exp]
12.64 0.7252
AT1G10510 EMB2004 embryo defective 2004, RNI-lik... Potri.008G193700
[exp]
18.54 0.7641
AT1G52380 NUP50 (Nucleoporin 50 kDa) pro... Potri.003G056400
[exp]
20.71 0.7513
AT1G60080 3'-5'-exoribonuclease family p... Potri.006G051200
[exp]
22.80 0.7523
AT5G64580 EMB3144 EMBRYO DEFECTIVE 3144, AAA-typ... Potri.005G059700
[exp]
22.80 0.7630

Potri.011G062500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.