Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29120 435 / 2e-137 ATGLR2.7 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) AT2G29100 431 / 4e-136 ATGLR2.9 GLUTAMATE RECEPTOR 2.9, glutamate receptor 2.9 (.1) AT5G11210 422 / 9e-134 ATGLR2.5 ARABIDOPSIS THALIANA GLU, glutamate receptor 2.5 (.1) AT2G29110 406 / 2e-126 ATGLR2.8 glutamate receptor 2.8 (.1) AT2G24720 387 / 9e-120 ATGLR2.2 glutamate receptor 2.2 (.1) AT5G27100 381 / 1e-117 ATGLR2.1 ARABIDOPSIS THALIANA GLUTAMATE RECEPTOR 2.1, glutamate receptor 2.1 (.1) AT4G35290 381 / 2e-117 ATGLUR2, ATGLR3.2, GLUR2 GLUTAMATE RECEPTOR 3.2, glutamate receptor 2 (.1.2) AT2G32400 377 / 5e-116 ATGLR3.7, GLR5 GLUTAMATE RECEPTOR 3.7, glutamate receptor 5 (.1) AT2G24710 376 / 1e-115 ATGLR2.3 glutamate receptor 2.3 (.1) AT1G05200 371 / 2e-113 GLUR3, ATGLR3.4 glutamate receptor 3.4 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G062900 [exp] 1683 / 0 AT5G11210 436 / 3e-139 ARABIDOPSIS THALIANA GLU, glutamate receptor 2.5 (.1) Potri.004G052600 [exp] 1290 / 0 AT2G29100 392 / 3e-121 GLUTAMATE RECEPTOR 2.9, glutamate receptor 2.9 (.1) Potri.004G052400 [exp] 955 / 0 AT2G29100 429 / 3e-135 GLUTAMATE RECEPTOR 2.9, glutamate receptor 2.9 (.1) Potri.004G052500 [exp] 935 / 0 AT2G29100 445 / 3e-141 GLUTAMATE RECEPTOR 2.9, glutamate receptor 2.9 (.1) Potri.011G062750 [exp] 779 / 0 AT2G29120 258 / 7e-77 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.011G063000 [exp] 594 / 0 AT1G05200 185 / 7e-52 glutamate receptor 3.4 (.1.2) Potri.014G028500 [exp] 518 / 6e-170 AT2G29120 360 / 5e-110 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.001G374600 [exp] 472 / 2e-152 AT2G29120 452 / 9e-145 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.001G375200 [exp] 468 / 5e-151 AT2G29120 436 / 8e-139 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013952 [exp] 664 / 0 AT2G29120 377 / 1e-116 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10013976 [exp] 645 / 0 AT2G29110 372 / 1e-114 glutamate receptor 2.8 (.1) Lus10005276 [exp] 406 / 9e-133 AT1G05200 274 / 4e-83 glutamate receptor 3.4 (.1.2) Lus10026235 [exp] 417 / 4e-130 AT2G29120 912 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10003436 [exp] 410 / 6e-128 AT2G29120 867 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10026913 [exp] 395 / 3e-123 AT2G29120 790 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10039671 [exp] 389 / 7e-120 AT1G05200 1239 / 0.0 glutamate receptor 3.4 (.1.2) Lus10038670 [exp] 394 / 3e-119 AT3G10490 441 / 5e-143 Arabidopsis NAC domain containing protein 51, NAC domain containing protein 52 (.1.2) Lus10012245 [exp] 386 / 5e-119 AT1G42540 1258 / 0.0 glutamate receptor 3.3 (.1) Lus10027171 [exp] 382 / 2e-117 AT1G05200 1243 / 0.0 glutamate receptor 3.4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0030 [poplar] [flax] Ion_channel PF00060 [poplar] [flax] Lig_chan Ligand-gated ion channel CL0177 [poplar] [flax] PBP PF00497 [poplar] [flax] SBP_bac_3 Bacterial extracellular solute-binding proteins, family 3 CL0144 [poplar] [flax] Periplas_BP PF13458 [poplar] [flax] Peripla_BP_6 Periplasmic binding protein
Representative CDS sequence Show only first row Show all	>Potri.011G062600.2 pacid=42780876 polypeptide=Potri.011G062600.2.p locus=Potri.011G062600 ID=Potri.011G062600.2.v4.1 annot-version=v4.1 ATGAAAAGGACTAATTTGTTCACCAAAGTAAATTCCCAACTAAGCACTTGCCCTCTTATTCCTGTTAATAAAGTTCTAAAACCTTGCTTTCTTTTATCTG TGCTCATCACCTTCCTTCTCATCCTCTCCTATGGAGTTGAAGCTGCGGCCAGCACGACCAAGGTTACTAATATTGGTGCCATCATCGATGGTAATTCCCG TACAGGGAAAGAAGAGAAAACAGCAATGGAAATTGCAGTCCAAAACTTCAACAACATCTCAAGAAACCACAAGCTCTCTCTTCACTTCAAGAATCCTAAA GGAGACCCTCTTCAAGCAGCTTATGCAGCTGAAGAGCTGATCAAAGAGAAGAAAGTGAAAGTGATTATTGGCATGGACAAATGGGAGGAAGCAGCCCTGG TTGCTAATATTGGAAACCAGTCTCAAGTTCCAATCCTTTCATTTGCAGCACCAGCCAGAACCCCGATATTAACTTCACTTCGTTGGCCTTTTCTAATTAG AATGGCCAGTGATGGGTCAGAACAGATGAGATGCATTGCAGCTCTTGTCCATTCTTATAATTGGAAAAGGGTAGTAGTGATTTATGAAGATGAGGTGTTA GGAAGTGAATATGGCAATTTAGCTCTTTTAACCGAGGCTCTACAAGAGGTTGGTTCGGAGATTGAATACCGCTTGGTTCTTCCACCGTTTTCATTTTTAA CAGATCCAATAGATGTTGTTCAAGATGAGCTTATTAAGCTACAAAATCAAACAGAAGCTCGTGTTTTTATTGTTCTTCAGTCATCTTTGCCTATGCTCAC TTGTATTTTCGGAGAAGCTAAGAAAGCGGGGCTTGTAGGCAATGACACAGTCTGGATAGTTGGAAACAGTATTACTAGTTTCTTGGATTCTGTGGACAAT CCTGTTTTTTCTTCTATGGAAGGCACTCTAGGAATCAAAACCTACTATTCTTCCAACAGTTCTTACAAAAGATTCGAAGCACTGTTCCAGAAAATTTTCC GGTCAGAGTATCTAAATGAAAATGATTTTCAGCCAGGAATTCAAGCATTAAGAGCCTATGACAGCATTGGTATTATCACACAGGCCATAGAAAAACTAGG TAGCAACATTACTAGTCCAAAAATGTTTCTAAACAGTGTATTAGAAAGTGATTTCACTGGTTTGAGTGGTAGAATACGTTTCAAGGATGGGATGCTGTCA GATTCTCCTACATTAAGGATTGTTAATGTGGTTGGGAAGAAATGTAAGGAACTGGATTTTTGGTTGCCAAATTGCGGTTTCTCGGATACCCTCTACGTGG AACAAGGCAAAGGAAGGTGCAGAAACAATGATGGTGGTAAAACCACAGGAGGGTTGTCCGGTCCAGTGATTTGGCCTGGTGATCTCAACGGCCGAGACCC AAAAGGATGGGCAATGCCTTCTGAAGCAAAGCCATTGCGAATAATAGTCCCTCGAAGAACCTCGTTCGATAAGTTTGTGACATTTCGAATTGGCGAGAAG CGGCCAGTAGGTTTTTGCGTTGACCTCTTTGACGAAGTTGTGAAACGATTGAATTACTCTATACCACCCGTATTCTTCGAGTTTGATGGGCAGTATGGTG ATATGATTGAAGGTGTCTACAACAAGACTTATGATGCTGCCATTGGAGATATAACCATATTAGCTGAAAGAGCAGAATACGTAGAATTCACTCAACCTTA TGCAGAGTCAGGATTGTCCATGATAGTTCCACTTGAGACTGAAGATACAACACGGATTTTCTTGAAGCCTTTTAACTTAAAGATGTGGATGGTGAGTAGT GCTTTATTCATCTACACAATGCTTATAATTTGGTTCCTGGAGCACCAAACGAATCCAGAATTTAGAGGCCCTCGGAAGTACCAGTTCGGGACCGCGCTTT GGTTCACATTTTCATCTCTATTCTTTGCTCAGAGGGAGAGACTTTATAGCAACTTCACTCGAGTTGTAGTGGTAGCGTGGCTTTGTGTTGTCTTTATCTT AACCTCAAGCTACACTGCCAGTTTGACTTCAATGCTCACCGTGCAACGAATGAAACCGAATTTTTCACAGTTTGAGAAACTAAAGAACGACAAGTTAAAT GTTGGTTGTAATAATGAATCTTTCGTCCAGGAGTACGTCAGGGATGTTCTTGGATTTGATCACGATAAAATCAAGGTCTTTAACCCTGAAAATGATTACA CAACTGAATTTGAAAGGAACAGCATAGCTGCTGCTTTTCTTGAACTCCCATATGAGAGACTTTTCCTCAATCAACATTGTAAAAGTTACTCCGGCACAAA AGCCACATACAGATTTGGAGGGCTCGGCTTTGCATTCCAAAAAGGCTCTCCTTTTGCTGCTGATTTTTCTAGAGAGATTCTATGCCTATCGGAGGAGGGG AACATAACACTTTTGGAAGAAAAGTGGTTTGCCCCCTCACCTGAGTGTTCAACTTCGGCAACTAATAATAATGTCGAAAGCTTGAGCCTCCGCAGCTTCA AGGGAATCTACATTGTATTTGCTGCGATATCTACCATCTGTTTTCTACTATTTCTCTTTCGCTTGTTAAGGAATTCACGGCCTCATCATGAAGCAGATGG AGGCCATCTCACTCCACGTGGTAAGAGTGGTACAAAATACTTTTACAACGGAGAAAAAACCCGAGTTCCTAGGAGGGCTTCAACTTTTGCTCAAGCACTA GATAAGGATGAATGGGGCTCTACGAAGTGGGAATATGTGAGTAACTCTGACAATTTGGAAAATAATTATGGTTCCCCGCAAGCTGAGATTGAAATGCCAA AAATTCCACGACATAAGGATCAAAGATGA
AA sequence Show only first row Show all	>Potri.011G062600.2 pacid=42780876 polypeptide=Potri.011G062600.2.p locus=Potri.011G062600 ID=Potri.011G062600.2.v4.1 annot-version=v4.1 MKRTNLFTKVNSQLSTCPLIPVNKVLKPCFLLSVLITFLLILSYGVEAAASTTKVTNIGAIIDGNSRTGKEEKTAMEIAVQNFNNISRNHKLSLHFKNPK GDPLQAAYAAEELIKEKKVKVIIGMDKWEEAALVANIGNQSQVPILSFAAPARTPILTSLRWPFLIRMASDGSEQMRCIAALVHSYNWKRVVVIYEDEVL GSEYGNLALLTEALQEVGSEIEYRLVLPPFSFLTDPIDVVQDELIKLQNQTEARVFIVLQSSLPMLTCIFGEAKKAGLVGNDTVWIVGNSITSFLDSVDN PVFSSMEGTLGIKTYYSSNSSYKRFEALFQKIFRSEYLNENDFQPGIQALRAYDSIGIITQAIEKLGSNITSPKMFLNSVLESDFTGLSGRIRFKDGMLS DSPTLRIVNVVGKKCKELDFWLPNCGFSDTLYVEQGKGRCRNNDGGKTTGGLSGPVIWPGDLNGRDPKGWAMPSEAKPLRIIVPRRTSFDKFVTFRIGEK RPVGFCVDLFDEVVKRLNYSIPPVFFEFDGQYGDMIEGVYNKTYDAAIGDITILAERAEYVEFTQPYAESGLSMIVPLETEDTTRIFLKPFNLKMWMVSS ALFIYTMLIIWFLEHQTNPEFRGPRKYQFGTALWFTFSSLFFAQRERLYSNFTRVVVVAWLCVVFILTSSYTASLTSMLTVQRMKPNFSQFEKLKNDKLN VGCNNESFVQEYVRDVLGFDHDKIKVFNPENDYTTEFERNSIAAAFLELPYERLFLNQHCKSYSGTKATYRFGGLGFAFQKGSPFAADFSREILCLSEEG NITLLEEKWFAPSPECSTSATNNNVESLSLRSFKGIYIVFAAISTICFLLFLFRLLRNSRPHHEADGGHLTPRGKSGTKYFYNGEKTRVPRRASTFAQAL DKDEWGSTKWEYVSNSDNLENNYGSPQAEIEMPKIPRHKDQR

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Potri.011G062600 [exp]	0	1
					Potri.017G111100 [exp]	3.46	0.9636
AT1G53440			Leucine-rich repeat transmembr...		Potri.003G026325 [exp]	3.46	0.9659
AT4G15350		CYP705A2	"cytochrome P450, family 705, ...		Potri.009G066200 [exp]	3.87	0.9629
AT3G08870			Concanavalin A-like lectin pro...		Potri.006G103200 [exp]	4.89	0.9519
AT1G06760			winged-helix DNA-binding trans...		Potri.005G219800 [exp]	5.74	0.9375	HON904
AT2G43000	NAC	ANAC042, JUB1, ...	NAC domain containing protein ...		Potri.005G205400 [exp]	6.48	0.9610
AT3G20140		CYP705A23	"cytochrome P450, family 705, ...		Potri.009G066300 [exp]	6.70	0.9497
AT1G05560		UGT75B1, UGT1	UDP-GLUCOSE TRANSFERASE 1, UDP...		Potri.002G236400 [exp]	7.48	0.9502	IAGLU.2
AT4G18960	MADS	AG	AGAMOUS, K-box region and MADS...		Potri.011G075800 [exp]	8.48	0.9544	AG1.1
AT1G11330			S-locus lectin protein kinase ...		Potri.011G039400 [exp]	9.53	0.9548

Compare expression of checked genes

Potri.011G062600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.