Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11210 436 / 4e-139 ATGLR2.5 ARABIDOPSIS THALIANA GLU, glutamate receptor 2.5 (.1) AT2G29120 438 / 2e-138 ATGLR2.7 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) AT2G29100 424 / 2e-133 ATGLR2.9 GLUTAMATE RECEPTOR 2.9, glutamate receptor 2.9 (.1) AT2G29110 405 / 3e-126 ATGLR2.8 glutamate receptor 2.8 (.1) AT4G35290 388 / 4e-120 ATGLUR2, ATGLR3.2, GLUR2 GLUTAMATE RECEPTOR 3.2, glutamate receptor 2 (.1.2) AT2G24720 382 / 5e-118 ATGLR2.2 glutamate receptor 2.2 (.1) AT1G05200 383 / 7e-118 GLUR3, ATGLR3.4 glutamate receptor 3.4 (.1.2) AT5G27100 381 / 1e-117 ATGLR2.1 ARABIDOPSIS THALIANA GLUTAMATE RECEPTOR 2.1, glutamate receptor 2.1 (.1) AT2G32400 378 / 3e-116 ATGLR3.7, GLR5 GLUTAMATE RECEPTOR 3.7, glutamate receptor 5 (.1) AT2G32390 373 / 6e-115 GLR6, ATGLR3.5 glutamate receptor 3.5 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G062600 [exp] 1687 / 0 AT2G29120 435 / 2e-137 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.004G052600 [exp] 1293 / 0 AT2G29100 392 / 3e-121 GLUTAMATE RECEPTOR 2.9, glutamate receptor 2.9 (.1) Potri.004G052400 [exp] 960 / 0 AT2G29100 429 / 3e-135 GLUTAMATE RECEPTOR 2.9, glutamate receptor 2.9 (.1) Potri.004G052500 [exp] 937 / 0 AT2G29100 445 / 3e-141 GLUTAMATE RECEPTOR 2.9, glutamate receptor 2.9 (.1) Potri.011G062750 [exp] 792 / 0 AT2G29120 258 / 7e-77 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.011G063000 [exp] 590 / 0 AT1G05200 185 / 7e-52 glutamate receptor 3.4 (.1.2) Potri.014G028500 [exp] 520 / 5e-171 AT2G29120 360 / 5e-110 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.001G374600 [exp] 488 / 8e-159 AT2G29120 452 / 9e-145 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.001G374300 [exp] 484 / 4e-157 AT2G29120 422 / 1e-133 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013952 [exp] 681 / 0 AT2G29120 377 / 1e-116 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10013976 [exp] 666 / 0 AT2G29110 372 / 1e-114 glutamate receptor 2.8 (.1) Lus10005276 [exp] 420 / 6e-138 AT1G05200 274 / 4e-83 glutamate receptor 3.4 (.1.2) Lus10026235 [exp] 427 / 8e-134 AT2G29120 912 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10003436 [exp] 419 / 2e-131 AT2G29120 867 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10026913 [exp] 414 / 2e-130 AT2G29120 790 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10039671 [exp] 395 / 2e-122 AT1G05200 1239 / 0.0 glutamate receptor 3.4 (.1.2) Lus10012245 [exp] 393 / 1e-121 AT1G42540 1258 / 0.0 glutamate receptor 3.3 (.1) Lus10027171 [exp] 391 / 1e-120 AT1G05200 1243 / 0.0 glutamate receptor 3.4 (.1.2) Lus10038670 [exp] 397 / 2e-120 AT3G10490 441 / 5e-143 Arabidopsis NAC domain containing protein 51, NAC domain containing protein 52 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0030 [poplar] [flax] Ion_channel PF00060 [poplar] [flax] Lig_chan Ligand-gated ion channel CL0177 [poplar] [flax] PBP PF00497 [poplar] [flax] SBP_bac_3 Bacterial extracellular solute-binding proteins, family 3 CL0144 [poplar] [flax] Periplas_BP PF13458 [poplar] [flax] Peripla_BP_6 Periplasmic binding protein
Representative CDS sequence Show only first row Show all	>Potri.011G062900.2 pacid=42781330 polypeptide=Potri.011G062900.2.p locus=Potri.011G062900 ID=Potri.011G062900.2.v4.1 annot-version=v4.1 ATGTATTATAAGGATTCTAAGACTTTCAAAATCAAAACTTCGTATAACAGAATGAAAAGGGCTAATTTGTTCACCAAAGTAAATTCCCAACTAAGGACTT GCCCTCTTATTCCTGTTAATAAAGTTCTAAAACCTTTCTTTCTTTTATCTGTGCTCATCACCTTCCTTCTCATCCTCTCTGATGGAGTTGAAGCTGCGGC CGGCACTAACAAGGTTACTAATATTGGTGCTATCATTGATGGCAATTCCCGTTCAGGGAAAGAAGAGAAAACAGCAATGGAAATTGCAGTCCAAAACTTC AACAACATCTCAAGAAACCACAAGCTCTCTCTTCACTTCAAGCATCCTAAAGGAGACCCTCTTCAAGCAGCATATGCAGCTGAAGAGCTGATCAAAGAGA AGAAAGTGGAAGTGATTATTGGCATGGACAAATGGGAGGAAGCAGCCCTGGTTGCTAATATTGGAAACCAGTCTCAAGTTCCAATTCTTTCATTTGCAGC ACCAGCCAGAACCCCGATATCAACTTCACTTCGTTGGCCTTTTCTAATTAGAATGGCCAGTGATGGGTCAGAACAGATGAGATGCATTGCAGCTCTTGTC CATTCTTATAATTGGAAAAGGGTAGTCGTGATTTATGAAGATGACGTGTTAGGAAGTGAATCTGGCAATTTAGCTCTTTTAACCGAGGCTCTACAAGAGG TTGGTTCGGAGATTGAATACCGCTTGGTTCTTCCACCGTTTTCATTTTTAACAGATCCAAAAGATGTTGTTCAAGATGAGCTTATGAAGCTACAAAATCA AACAGAAGCTCGTGTTTTTATTGTTCTTCAGTCATCTTTGCCTATGCTCACTTGTATTTTCGGAGAAGCTAAGAAAGCGGGGCTTGTAGGCAATGACACG GTCTGGATAGTTGCAAACAGTATTACTAGTTTCTTGGATTCTGTGGACAATCCTGTTTTTTCTTCTATGGAAGGCACTCTAGGAATCAAAACCTACTATT CTTCCAACAGTTCTTACAAAAGATTCGAAGCACTGTTCCAGAAAATTTTTCGGTCAGAGTATCTAAATGAAAATGATTTTCAGCCAGGAATTCAAGCATT AAGAGCCTATGACAGCATTGGTATTATCACACAGGCCATAGAAAAACTAGGTAGCAACATTAGGAGTCCAAAAATGTTTCTAAACAGCGTATTAGAAAGC GATTTCACTGGTTTGAGTGGTAGAATACGTTTCAAGGATGGGATGCTGTCAGATGCTCCTACATTAAGGATTGTTAATGTGGATGGGAAGAAATGTAAGG AACTGGATTTTTGGTTGCCAAATTGCGGTTTCTCGGATACCCTCTACGTGGAACAAGGCAAAGGAAGGTGCAGAAACAGTGATGGTGGTAAAACCACAGG AGGGTTGTCCGGTCCAGTGATTTGGCCTGGTGATCTCAACGGCCGAGACCCAAAAGGATGGGCAATGCCTACTGAAGCAAAGCCATTGCGAATAATAGTC CCTCAAAGAACCTCGTTCGATAAGTTTGTGACATTTCGAAGTGGCGAGAAGCGGCCAGTAGGTTTTTGCGTTGACCTCTTTGACGAAGTTGTGAGACGAT TGAATTACTCCATACCACACGTATTCGTCCACTTTGATGGGCAGTACGGCGATATGATTGAAGGTGTCTACAACAAGACTTATGATGCTGCCATTGGAGA TATAACCATATTAGCTGAAAGAACAGAATACGTAGAGTTCACTCAACCTTACGCAGAGTCAGGATTGTCCATGATAGTTCCATTTGAGACTGAAGATACA ACATGGATTTTCGTGAAGCCTTTTAACTTAGAGATGTGGATGGTGAGTTGTGCTATATTCATCTACACAATGCTTATAATTTGGTTCCTCGAGCACCAAA CGAATCCAGAATTTAGAGGACCTCGGAAGTATCAGTTCGGGACCGCGTTTTGGTTCACATTTTCATCTCTATTCTTTGCTCAGAGGGAGAAACTTTATAG CAACTTCACTCGAGTTGTGGTGGTAGCGTGGCTTTGTGTTGTCTTTATCTTAACCTCAAGCTACACTGCCAGTTTGACTTCAATGCTCACCGTGCAACGA ATGAAACCGAATTTTTCAGAGTTTGAGAAACTAAAGAAGGACAAGTTGAATGTTGGTTGTGATGATGATTCTTTCGTCCAGCAGTACCTCCAGGATGTTC TTGGATTTGATCACGATAAAATCAAGGTCTTTAACCGTGAAAATAATTACACAACTGAATTTGAAAGGAACAGCATAGCTGCTGCTTTTCTTGAACTCCC ATATGAGAGACTTTTCCTCAATCAACATTGTAAAAGTTACAGCGGCTCAAAAGCCACATACAGATTTGGAGGGCTCGGCTTTGCATTCCAAAAAGGCTCT CCTTTTGCTGCTGATTTTTCTAGAGAGATTCTATGCCTATCGGAGGATGGAAACATAACATTTTTCGAAGAAAAGTGGTTTGCCCCCTCACCTGAGTGTT CAACTTCGGCAACTAATAATAATGTCGAAAGCCTGAGCCTCCGCAGCTTCAAGGGAATCTACATTGTATCTGCTGCGATATCTACTATTTGTTTTCTGCT ATTTCTCATTCGCTTGTTCAGGAATTCACGGCCTCATCAAGAAGCAGATGGAGGCCATCTCACTCCAGGTGGTAAGAGTGGTTCAAGCAGTGAAGAGAGA ATTACAAAATACTTTTACAACGGAAATAAAACCCGAGTTCCTAGGAGGGCTTCAACTTTTGCTCAAGCACTAGATAAGGATGAATGGGGCTCTACGAAGT GGGAATATGTGAGTAACTCTGACAATTTGGAGACTAATTAG
AA sequence Show only first row Show all	>Potri.011G062900.2 pacid=42781330 polypeptide=Potri.011G062900.2.p locus=Potri.011G062900 ID=Potri.011G062900.2.v4.1 annot-version=v4.1 MYYKDSKTFKIKTSYNRMKRANLFTKVNSQLRTCPLIPVNKVLKPFFLLSVLITFLLILSDGVEAAAGTNKVTNIGAIIDGNSRSGKEEKTAMEIAVQNF NNISRNHKLSLHFKHPKGDPLQAAYAAEELIKEKKVEVIIGMDKWEEAALVANIGNQSQVPILSFAAPARTPISTSLRWPFLIRMASDGSEQMRCIAALV HSYNWKRVVVIYEDDVLGSESGNLALLTEALQEVGSEIEYRLVLPPFSFLTDPKDVVQDELMKLQNQTEARVFIVLQSSLPMLTCIFGEAKKAGLVGNDT VWIVANSITSFLDSVDNPVFSSMEGTLGIKTYYSSNSSYKRFEALFQKIFRSEYLNENDFQPGIQALRAYDSIGIITQAIEKLGSNIRSPKMFLNSVLES DFTGLSGRIRFKDGMLSDAPTLRIVNVDGKKCKELDFWLPNCGFSDTLYVEQGKGRCRNSDGGKTTGGLSGPVIWPGDLNGRDPKGWAMPTEAKPLRIIV PQRTSFDKFVTFRSGEKRPVGFCVDLFDEVVRRLNYSIPHVFVHFDGQYGDMIEGVYNKTYDAAIGDITILAERTEYVEFTQPYAESGLSMIVPFETEDT TWIFVKPFNLEMWMVSCAIFIYTMLIIWFLEHQTNPEFRGPRKYQFGTAFWFTFSSLFFAQREKLYSNFTRVVVVAWLCVVFILTSSYTASLTSMLTVQR MKPNFSEFEKLKKDKLNVGCDDDSFVQQYLQDVLGFDHDKIKVFNRENNYTTEFERNSIAAAFLELPYERLFLNQHCKSYSGSKATYRFGGLGFAFQKGS PFAADFSREILCLSEDGNITFFEEKWFAPSPECSTSATNNNVESLSLRSFKGIYIVSAAISTICFLLFLIRLFRNSRPHQEADGGHLTPGGKSGSSSEER ITKYFYNGNKTRVPRRASTFAQALDKDEWGSTKWEYVSNSDNLETN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G11210		ATGLR2.5	ARABIDOPSIS THALIANA GLU, glut...		Potri.011G062900 [exp]	0	1
AT1G61560		ATMLO6, MLO6	MILDEW RESISTANCE LOCUS O 6, S...		Potri.008G041400 [exp]	1.41	0.9822	Pt-MLO12.2
					Potri.001G131600 [exp]	3.46	0.9736
AT1G66910			Protein kinase superfamily pro...		Potri.015G018101 [exp]	4.00	0.9742
AT5G04500			glycosyltransferase family pro...		Potri.010G232700 [exp]	4.89	0.9800
					Potri.017G111150 [exp]	10.95	0.9713
AT1G68040			S-adenosyl-L-methionine-depend...		Potri.019G016102 [exp]	11.35	0.9771
AT1G21270		WAK2	wall-associated kinase 2 (.1)		Potri.004G192100 [exp]	12.04	0.9739
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Potri.001G134500 [exp]	12.96	0.9634
AT1G70250			receptor serine/threonine kina...		Potri.012G003450 [exp]	17.29	0.9680
AT1G66920			Protein kinase superfamily pro...		Potri.012G003500 [exp]	18.97	0.9671

Compare expression of checked genes

Potri.011G062900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.