Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05200 184 / 2e-51 GLUR3, ATGLR3.4 glutamate receptor 3.4 (.1.2) AT5G11210 179 / 5e-50 ATGLR2.5 ARABIDOPSIS THALIANA GLU, glutamate receptor 2.5 (.1) AT2G29100 179 / 7e-50 ATGLR2.9 GLUTAMATE RECEPTOR 2.9, glutamate receptor 2.9 (.1) AT4G35290 179 / 8e-50 ATGLUR2, ATGLR3.2, GLUR2 GLUTAMATE RECEPTOR 3.2, glutamate receptor 2 (.1.2) AT2G29120 177 / 3e-49 ATGLR2.7 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) AT1G42540 177 / 3e-49 ATGLR3.3 glutamate receptor 3.3 (.1) AT2G17260 176 / 6e-49 ATGLR3.1, ATGLR2, GLR2 glutamate receptor 2 (.1) AT5G27100 174 / 3e-48 ATGLR2.1 ARABIDOPSIS THALIANA GLUTAMATE RECEPTOR 2.1, glutamate receptor 2.1 (.1) AT2G32390 167 / 6e-46 GLR6, ATGLR3.5 glutamate receptor 3.5 (.1.2.3) AT3G51480 167 / 7e-46 ATGLR3.6 glutamate receptor 3.6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G062900 [exp] 589 / 0 AT5G11210 436 / 3e-139 ARABIDOPSIS THALIANA GLU, glutamate receptor 2.5 (.1) Potri.011G062600 [exp] 586 / 0 AT2G29120 435 / 2e-137 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.011G062750 [exp] 585 / 0 AT2G29120 258 / 7e-77 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.004G052600 [exp] 432 / 2e-144 AT2G29100 392 / 3e-121 GLUTAMATE RECEPTOR 2.9, glutamate receptor 2.9 (.1) Potri.004G052400 [exp] 327 / 5e-104 AT2G29100 429 / 3e-135 GLUTAMATE RECEPTOR 2.9, glutamate receptor 2.9 (.1) Potri.004G052500 [exp] 313 / 6e-99 AT2G29100 445 / 3e-141 GLUTAMATE RECEPTOR 2.9, glutamate receptor 2.9 (.1) Potri.018G012100 [exp] 218 / 1e-63 AT2G29120 934 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.018G012900 [exp] 218 / 2e-63 AT2G29120 910 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.018G012600 [exp] 216 / 9e-63 AT2G29120 946 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013976 [exp] 303 / 1e-95 AT2G29110 372 / 1e-114 glutamate receptor 2.8 (.1) Lus10005276 [exp] 271 / 7e-88 AT1G05200 274 / 4e-83 glutamate receptor 3.4 (.1.2) Lus10013952 [exp] 278 / 3e-86 AT2G29120 377 / 1e-116 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10026235 [exp] 199 / 6e-57 AT2G29120 912 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10026876 [exp] 193 / 5e-56 AT2G29120 538 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10026913 [exp] 187 / 6e-53 AT2G29120 790 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10016031 [exp] 187 / 8e-53 AT1G42540 1123 / 0.0 glutamate receptor 3.3 (.1) Lus10012245 [exp] 187 / 9e-53 AT1G42540 1258 / 0.0 glutamate receptor 3.3 (.1) Lus10035980 [exp] 186 / 4e-52 AT3G51480 1149 / 0.0 glutamate receptor 3.6 (.1) Lus10003436 [exp] 183 / 3e-51 AT2G29120 867 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0030 [poplar] [flax] Ion_channel PF00060 [poplar] [flax] Lig_chan Ligand-gated ion channel CL0177 [poplar] [flax] PBP PF00497 [poplar] [flax] SBP_bac_3 Bacterial extracellular solute-binding proteins, family 3
Representative CDS sequence Show only first row Show all	>Potri.011G063000.1 pacid=42781604 polypeptide=Potri.011G063000.1.p locus=Potri.011G063000 ID=Potri.011G063000.1.v4.1 annot-version=v4.1 ATGATAGTTCCACTTGAGACTGAAGATACAGCATGGATTTTTTTGAAGCCTTTTAACTTAGAGATGTGGATGGTGAGCGGTGCTATATTCATCTACACAA TGCTTATAATTTGGTTCCTGGAGCACCAAACGAATCCAGAATTTAGAGGCCCTCGGAAGTATCAGTTCGGGACCGCGCTTTGGTTCACATTTTCATCTCT ATTCTTTGCTCAGAGGGAGAGACTTTATAGCAACTTCACTCGAGTTGTGGTGGTAGCGTGGCTTTGTGTTGTCTTTATCTTAACCTCAAGCTACACTGCC AGTTTGACTTCAATGCTCACCGTGCAACGAATGAAACCGAATTTTTCAGAGTTTGAGAAACTAAAGAACGACAAGTTAAATGTTGGTTGTAATAATGAAT CTTTCATCCAGGAGTACGTCAAGGATGTTCTTGGATTAGATCACGATAAAATCAAGATCTATAACCCTGAAAATGATTACACAAGTACTGATTTTGAAAG GAACAACATAGCTGCTGCTTTTCTTGAACTCCCATATGAGAGACTTTTCCTCAATCAACATTGTAAAAGTTGCACCAGCACAAAAGCAGCATACAGATTT GGAGGGTTCGGCTTTGCGTTCCAAAAAGGCTCTCCTTTTGCTGCTGATTTTTCTAGAGAGATTCTATGCCTATCGGAGGATGGGAACATAACACGTTTGG AAGAAAAGTGGTTTGCCCCCTCACCTGAGTGTTCAACTTCGGCAACTAATAATAATTTCGAAAGCTTGAGCGTCCGCAGCTTCAAGGGAATCTACATTGT ATCTGCTGCGGTATCTACTATCTGTTTTCTACTATTTCTCTTTCGCTTGTTAAGGAGTTCACGGCCTCATCAAGAAGCAGATGGAGGCCATCTCACTCCA GGTGGTAAGAGTGGTTCAAGCAGTGGAGATAGAATTACAAAATGCTTTTATAACGGAGAAAAAACCAGAGTTCTTAGGAGGGTTTCAACTTTTGCTCAAG CACTACATAAGGATGAATGGGGCTCTACGAAGTGGGAATATGTGAGTAACTCTGACAATTTGGAGAATAATTAG
AA sequence Show only first row Show all	>Potri.011G063000.1 pacid=42781604 polypeptide=Potri.011G063000.1.p locus=Potri.011G063000 ID=Potri.011G063000.1.v4.1 annot-version=v4.1 MIVPLETEDTAWIFLKPFNLEMWMVSGAIFIYTMLIIWFLEHQTNPEFRGPRKYQFGTALWFTFSSLFFAQRERLYSNFTRVVVVAWLCVVFILTSSYTA SLTSMLTVQRMKPNFSEFEKLKNDKLNVGCNNESFIQEYVKDVLGLDHDKIKIYNPENDYTSTDFERNNIAAAFLELPYERLFLNQHCKSCTSTKAAYRF GGFGFAFQKGSPFAADFSREILCLSEDGNITRLEEKWFAPSPECSTSATNNNFESLSVRSFKGIYIVSAAVSTICFLLFLFRLLRSSRPHQEADGGHLTP GGKSGSSSGDRITKCFYNGEKTRVLRRVSTFAQALHKDEWGSTKWEYVSNSDNLENN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G05200		GLUR3, ATGLR3.4	glutamate receptor 3.4 (.1.2)		Potri.011G063000 [exp]	0	1
AT1G78780			pathogenesis-related family pr...		Potri.005G188300 [exp]	1.73	0.9963
AT4G27290			S-locus lectin protein kinase ...		Potri.001G412400 [exp]	2.44	0.9958
AT3G16510			Calcium-dependent lipid-bindin...		Potri.008G209800 [exp]	2.44	0.9943	SRC2.4
					Potri.006G106150 [exp]	3.46	0.9962
					Potri.010G075100 [exp]	4.89	0.9940
AT2G29110		ATGLR2.8	glutamate receptor 2.8 (.1)		Potri.011G063050 [exp]	5.19	0.9915
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Potri.016G101600 [exp]	8.60	0.9897
AT5G06740			Concanavalin A-like lectin pro...		Potri.004G209300 [exp]	9.16	0.9955
AT1G16260			Wall-associated kinase family ...		Potri.003G185800 [exp]	11.61	0.9947
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Potri.001G375200 [exp]	12.64	0.9846

Compare expression of checked genes

Potri.011G063000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.