Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11180 51 / 1e-07 ATGLR2.6 ARABIDOPSIS THALIANA GLUTAMATE RECEPTOR 2.6, glutamate receptor 2.6 (.1) AT3G51480 48 / 1e-06 ATGLR3.6 glutamate receptor 3.6 (.1) AT3G07520 46 / 9e-06 ATGLR1.4 glutamate receptor 1.4 (.1) AT4G31710 43 / 6e-05 ATGLR2.4 ARABIDOPSIS THALIANA GLUTAMATE RECEPTOR 2.4, glutamate receptor 2.4 (.1) AT5G11210 43 / 9e-05 ATGLR2.5 ARABIDOPSIS THALIANA GLU, glutamate receptor 2.5 (.1) AT1G42540 41 / 0.0003 ATGLR3.3 glutamate receptor 3.3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G062900 [exp] 305 / 3e-98 AT5G11210 436 / 3e-139 ARABIDOPSIS THALIANA GLU, glutamate receptor 2.5 (.1) Potri.011G062600 [exp] 268 / 1e-84 AT2G29120 435 / 2e-137 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.004G052600 [exp] 207 / 3e-62 AT2G29100 392 / 3e-121 GLUTAMATE RECEPTOR 2.9, glutamate receptor 2.9 (.1) Potri.004G052400 [exp] 153 / 5e-43 AT2G29100 429 / 3e-135 GLUTAMATE RECEPTOR 2.9, glutamate receptor 2.9 (.1) Potri.004G052500 [exp] 152 / 1e-42 AT2G29100 445 / 3e-141 GLUTAMATE RECEPTOR 2.9, glutamate receptor 2.9 (.1) Potri.001G375200 [exp] 90 / 5e-21 AT2G29120 436 / 8e-139 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.019G091800 [exp] 86 / 1e-19 AT2G29120 298 / 1e-89 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.001G374600 [exp] 74 / 2e-15 AT2G29120 452 / 9e-145 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.001G374300 [exp] 74 / 2e-15 AT2G29120 422 / 1e-133 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038670 [exp] 91 / 4e-21 AT3G10490 441 / 5e-143 Arabidopsis NAC domain containing protein 51, NAC domain containing protein 52 (.1.2) Lus10013952 [exp] 70 / 7e-14 AT2G29120 377 / 1e-116 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10013976 [exp] 58 / 7e-10 AT2G29110 372 / 1e-114 glutamate receptor 2.8 (.1) Lus10020109 [exp] 41 / 0.0005 AT2G29120 822 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0144 [poplar] [flax] Periplas_BP PF01094 [poplar] [flax] ANF_receptor Receptor family ligand binding region
Representative CDS sequence Show only first row Show all	>Potri.011G063050.1 pacid=42782108 polypeptide=Potri.011G063050.1.p locus=Potri.011G063050 ID=Potri.011G063050.1.v4.1 annot-version=v4.1 ATGTGTGTGTATATATCCATTCAGTATAAGGATTCTACGACTTTCAAAATCAAAACTTCGTATAACAGAATGAAAAGGGCTAATTTGTTCACCAAAGTAA ATTCCCAACTAAGGACTTGCCCTCTTATTCCTGTTAATAAAGCTCTAAAACCATGCTTTCTTTTATCTGTGCTCATCACCTTCCTTCTCATCCTCTCCGA TGGAGTTGAAGCTGCGGCCGGCACGAACAAGGTTACTAATATTGGTGCTATCATCGATGGTAATTCCCGTACAGGCAAAGAAGAGAAAACAGCAATGGAA ATTGCAGTCCAAAACTTCAACAACATCTCAAGCAACCACAAGCTCTCTCTTCACTTCAAGCATCCTAAAGGAGACCCTCTTCAAGCAGCTTATGCAGCTA AAGAGCTGATAAAAGAGAAGAAAGTGGAAGTGATTATTGGCATGGACAAATGGGAGGAAGCAGTCCTGGTTGCTAATATTGGAAACCAGTCTCAAGTTCC AATCCTTTCGTTTGCAGCCCCAGCCAGAACCCCGATATTAACTTCACTTCGTTGGCCTTTTCTAATTAGAATGGGTCAGAACAGATGA
AA sequence Show only first row Show all	>Potri.011G063050.1 pacid=42782108 polypeptide=Potri.011G063050.1.p locus=Potri.011G063050 ID=Potri.011G063050.1.v4.1 annot-version=v4.1 MCVYISIQYKDSTTFKIKTSYNRMKRANLFTKVNSQLRTCPLIPVNKALKPCFLLSVLITFLLILSDGVEAAAGTNKVTNIGAIIDGNSRTGKEEKTAME IAVQNFNNISSNHKLSLHFKHPKGDPLQAAYAAKELIKEKKVEVIIGMDKWEEAVLVANIGNQSQVPILSFAAPARTPILTSLRWPFLIRMGQNR

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G29110		ATGLR2.8	glutamate receptor 2.8 (.1)		Potri.011G063050 [exp]	0	1
AT3G16510			Calcium-dependent lipid-bindin...		Potri.008G209800 [exp]	4.47	0.9907	SRC2.4
AT1G05200		GLUR3, ATGLR3.4	glutamate receptor 3.4 (.1.2)		Potri.011G063000 [exp]	5.19	0.9915
					Potri.010G075100 [exp]	5.65	0.9888
AT1G16260			Wall-associated kinase family ...		Potri.001G039200 [exp]	8.66	0.9890
AT1G16260			Wall-associated kinase family ...		Potri.003G185750 [exp]	16.58	0.9878
AT5G08350			GRAM domain-containing protein...		Potri.004G068000 [exp]	16.73	0.9831
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Potri.016G101600 [exp]	17.54	0.9843
AT2G32210			unknown protein		Potri.015G120800 [exp]	17.83	0.9862
AT5G48380		BIR1	BAK1-interacting receptor-like...		Potri.017G004400 [exp]	20.12	0.9860
					Potri.019G016114 [exp]	20.85	0.9604

Compare expression of checked genes

Potri.011G063050 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.