Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42350 106 / 3e-28 RING/U-box superfamily protein (.1) AT3G16720 107 / 1e-27 ATL2 TOXICOS EN LEVADURA 2 (.1) AT2G42360 99 / 2e-25 RING/U-box superfamily protein (.1) AT4G15975 92 / 1e-22 RING/U-box superfamily protein (.1) AT2G35420 90 / 1e-21 RING/U-box superfamily protein (.1) AT1G72310 89 / 5e-21 ATL3 RING/U-box superfamily protein (.1) AT2G34000 85 / 1e-20 RING/U-box superfamily protein (.1) AT3G62690 87 / 2e-20 ATL5 AtL5 (.1) AT1G53820 87 / 4e-20 RING/U-box superfamily protein (.1) AT5G58580 86 / 1e-19 ATL63 TOXICOS EN LEVADURA 63 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G091400 [exp] 131 / 2e-37 AT2G42360 143 / 9e-42 RING/U-box superfamily protein (.1) Potri.019G010600 [exp] 96 / 4e-24 AT1G49230 158 / 1e-48 RING/U-box superfamily protein (.1) Potri.010G010500 [exp] 94 / 5e-23 AT3G16720 202 / 1e-63 TOXICOS EN LEVADURA 2 (.1) Potri.003G073300 [exp] 93 / 1e-22 AT1G53820 157 / 2e-46 RING/U-box superfamily protein (.1) Potri.001G162000 [exp] 92 / 2e-22 AT1G53820 149 / 2e-43 RING/U-box superfamily protein (.1) Potri.008G219200 [exp] 92 / 4e-22 AT3G16720 197 / 2e-61 TOXICOS EN LEVADURA 2 (.1) Potri.001G279200 [exp] 88 / 1e-20 AT5G58580 101 / 4e-25 TOXICOS EN LEVADURA 63 (.1) Potri.001G212101 [exp] 86 / 4e-20 AT2G27940 96 / 2e-23 RING/U-box superfamily protein (.1) Potri.013G025800 [exp] 87 / 6e-20 AT3G05200 261 / 9e-84 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005275 [exp] 117 / 2e-33 AT2G42360 104 / 2e-28 RING/U-box superfamily protein (.1) Lus10002194 [exp] 99 / 5e-25 AT2G42360 153 / 4e-46 RING/U-box superfamily protein (.1) Lus10037490 [exp] 92 / 1e-21 AT3G16720 224 / 2e-70 TOXICOS EN LEVADURA 2 (.1) Lus10009511 [exp] 90 / 9e-21 AT2G20030 228 / 3e-71 RING/U-box superfamily protein (.1) Lus10011702 [exp] 90 / 9e-21 AT4G28890 231 / 1e-71 RING/U-box superfamily protein (.1) Lus10006493 [exp] 87 / 4e-20 AT3G16720 221 / 5e-71 TOXICOS EN LEVADURA 2 (.1) Lus10021197 [exp] 86 / 1e-19 AT1G04360 268 / 2e-87 RING/U-box superfamily protein (.1) Lus10016163 [exp] 84 / 1e-19 AT2G27940 133 / 1e-38 RING/U-box superfamily protein (.1) Lus10031515 [exp] 84 / 4e-19 AT3G05200 232 / 1e-73 RING/U-box superfamily protein (.1) Lus10012745 [exp] 84 / 5e-19 AT4G33565 168 / 4e-49 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13639 [poplar] [flax] zf-RING_2 Ring finger domain
Representative CDS sequence Show only first row Show all	>Potri.011G063100.1 pacid=42780849 polypeptide=Potri.011G063100.1.p locus=Potri.011G063100 ID=Potri.011G063100.1.v4.1 annot-version=v4.1 ATGGGTGGTTCTGATGATGATGATCACAAGAAACGTGTCAGCCAGAAGGTCATGCTTGCCATGTTCTTGTGTTCTTTCGGCTTTGTGTTGCTGTTAGTTC TTCTCCATCTTTACTCTAGACATCGGCTAAGAAGCCAAAGGAGACGCCATGCCATATTCTTTCATGGTCTAGGAAGGCAAACCACACCGGATATAGAAGA ATCTATTGAGCCACCCAAGCGAGGGCTTGATCCTTTGGTCATATCCTCACTTCCTTTGTTCACATATAAGCTAGCTGACCAGACTGATCACGGTGAACCT GTGGAGTGCTCGATTTGCTTGGGTACGATAGTGGAAGGTGACACGGTTAGGGTGTTACCAAATTGTAAACACACGTTTCATGTAGAGTGTATTGATATGT GGCTTGGGTCACATTCAACATGTCCCATATGTCGAACCGACGCCGAGCCTATGATCCAGCCAGCCGGGGAGAAGGCCATGAACAGTGGTGCCGAACCTTC AGCTCCGCCTATAGAGGAGAATATGGTACATGGCGGTGATCAAATAGAGAAAGAAGGTGGATCAGACTTGAGAGTAACATCTTTTCGCGGGATACCTACT CGGGAGAGATCATCAAGGACTCGGAGCTGTAGAGATGAAATTGGTGCGGAGGACGATGAATATTATGTCATAGGTAAGTAA
AA sequence Show only first row Show all	>Potri.011G063100.1 pacid=42780849 polypeptide=Potri.011G063100.1.p locus=Potri.011G063100 ID=Potri.011G063100.1.v4.1 annot-version=v4.1 MGGSDDDDHKKRVSQKVMLAMFLCSFGFVLLLVLLHLYSRHRLRSQRRRHAIFFHGLGRQTTPDIEESIEPPKRGLDPLVISSLPLFTYKLADQTDHGEP VECSICLGTIVEGDTVRVLPNCKHTFHVECIDMWLGSHSTCPICRTDAEPMIQPAGEKAMNSGAEPSAPPIEENMVHGGDQIEKEGGSDLRVTSFRGIPT RERSSRTRSCRDEIGAEDDEYYVIGK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G42350			RING/U-box superfamily protein...		Potri.011G063100 [exp]	0	1
AT1G66920			Protein kinase superfamily pro...		Potri.012G003000 [exp]	2.00	0.9922
AT1G66920			Protein kinase superfamily pro...		Potri.012G003200 [exp]	3.16	0.9905
AT1G68840	AP2_ERF	EDF2, RAV2, RAP...	TEMPRANILLO 2, RELATED TO AP2 ...		Potri.003G011132 [exp]	3.16	0.9806
AT5G08350			GRAM domain-containing protein...		Potri.004G068000 [exp]	3.46	0.9875
AT1G66920			Protein kinase superfamily pro...		Potri.012G002800 [exp]	3.87	0.9869
AT1G66920			Protein kinase superfamily pro...		Potri.012G003500 [exp]	5.47	0.9862
AT1G70250			receptor serine/threonine kina...		Potri.012G003450 [exp]	9.53	0.9793
AT1G68040			S-adenosyl-L-methionine-depend...		Potri.019G016102 [exp]	12.32	0.9830
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Potri.016G101600 [exp]	16.97	0.9819
AT1G61560		ATMLO6, MLO6	MILDEW RESISTANCE LOCUS O 6, S...		Potri.008G041400 [exp]	17.88	0.9724	Pt-MLO12.2

Compare expression of checked genes

Potri.011G063100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.