Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33990 239 / 4e-78 IQD9 IQ-domain 9 (.1) AT3G15050 228 / 8e-74 IQD10 IQ-domain 10 (.1) AT3G22190 130 / 1e-34 IQD5 IQ-domain 5 (.1.2) AT5G03040 129 / 7e-34 IQD2 IQ-domain 2 (.1.2.3) AT2G26180 128 / 9e-34 IQD6 IQ-domain 6 (.1) AT3G52290 121 / 4e-31 IQD3 IQ-domain 3 (.1) AT2G26410 118 / 1e-29 IQD4 IQ-domain 4 (.1) AT3G09710 115 / 4e-29 IQD1 IQ-domain 1 (.1.2) AT1G72670 110 / 4e-27 IQD8 IQ-domain 8 (.1) AT3G59690 104 / 8e-25 IQD13 IQ-domain 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G053000 [exp] 485 / 2e-174 AT2G33990 236 / 5e-77 IQ-domain 9 (.1) Potri.001G375700 [exp] 281 / 4e-94 AT3G15050 245 / 1e-80 IQ-domain 10 (.1) Potri.011G096500 [exp] 273 / 4e-91 AT3G15050 262 / 2e-87 IQ-domain 10 (.1) Potri.001G215200 [exp] 147 / 8e-41 AT3G22190 272 / 4e-87 IQ-domain 5 (.1.2) Potri.009G015800 [exp] 140 / 3e-38 AT3G22190 286 / 9e-93 IQ-domain 5 (.1.2) Potri.006G226600 [exp] 134 / 8e-36 AT2G26180 386 / 1e-131 IQ-domain 6 (.1) Potri.006G131100 [exp] 134 / 1e-35 AT5G03040 369 / 1e-123 IQ-domain 2 (.1.2.3) Potri.010G218100 [exp] 130 / 4e-34 AT5G03040 323 / 8e-106 IQ-domain 2 (.1.2.3) Potri.016G086300 [exp] 127 / 3e-33 AT5G03040 372 / 6e-125 IQ-domain 2 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025425 [exp] 298 / 1e-100 AT2G33990 243 / 1e-79 IQ-domain 9 (.1) Lus10015300 [exp] 293 / 2e-98 AT2G33990 242 / 3e-79 IQ-domain 9 (.1) Lus10036508 [exp] 152 / 3e-42 AT5G03040 343 / 1e-113 IQ-domain 2 (.1.2.3) Lus10041419 [exp] 149 / 1e-41 AT5G03040 345 / 2e-115 IQ-domain 2 (.1.2.3) Lus10013362 [exp] 136 / 1e-36 AT3G22190 338 / 4e-113 IQ-domain 5 (.1.2) Lus10004107 [exp] 122 / 2e-31 AT3G22190 308 / 6e-101 IQ-domain 5 (.1.2) Lus10019916 [exp] 119 / 3e-30 AT5G03040 410 / 9e-141 IQ-domain 2 (.1.2.3) Lus10013522 [exp] 113 / 4e-28 AT2G26180 403 / 2e-138 IQ-domain 6 (.1) Lus10026486 [exp] 114 / 6e-28 AT5G03040 414 / 4e-140 IQ-domain 2 (.1.2.3) Lus10025593 [exp] 103 / 2e-24 AT3G59690 498 / 1e-172 IQ-domain 13 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.011G063200.3 pacid=42781569 polypeptide=Potri.011G063200.3.p locus=Potri.011G063200 ID=Potri.011G063200.3.v4.1 annot-version=v4.1 ATGGGTTCTGGAGATTGGTTTAAGACAATAATTAGCATAAAGAAAGTGAAGGATGACAGCTCAAAACAAGCAAAGGGGTCTTCAACTTCTGAAAAATCAA ATGGCTTCAAATGGAAGCACAAGCTTCAAAAAGAATCTGCAAGCTTTGCAAATGGTTCCAATAGGGCCAATCCCAGATTTCCTGACATGCCAGTTGAGGA TTTGGCTGCCACTCGGATTCAAACGGCATTCAGGGCTTACAGGGCTAGGAAAACTCTTCGCTGTTTGAAAGGTAAAGTGAGATTACAGATCATCACCCAG AATTATTCTTTCAAAAAGCAAGCTGCAACTACTTTGAACTACCTTCACTCATGGAGCCAAATACAGGCCCAGATTAGAGCCCGTAGACTCTTTATGGTTA CCGAGGGCCGGTTAAGACAGAAGAAATTAGAGAATCAACTAAAACTTGAGGCAAAGCTTCATGATCTGGAGGTTGAATGGAGTGGTGGCTGTGAAACAAT GGAGAAAATTCTTGCAAGAATACATCAGAGGGAAGAAGCAGCAGTTAAGCGGGAACGAGCAATGGCATATGCCTTTTCTCATCAGTGGAGGGCCAGCTAC GGTCATGACCTTGGGGTGGTTAATTATGAACTTGGGAAAGCTAATTGGGGCTGGAGTTGGAAGGAACGTTGGATTGCTACTCGACCATGGGAAAGCCGTG TCGCTGCCAAGTCTGTTAGTCCAAAGAAAATGAAGGGCAGGCAGGCTAATAAGGTTGATGAAACGACAAAGTTGCCAACCAGAAAAACACCAGTTTCATC TAAACCATCATTATTTAATGGGAAAGGAACTCCAACGGCGCAGAGATTATCTTACCCACCAGCTGAAAAAAGGGTTTCACTTGAGGGAAGCATTAAATCT GATGCAGCAAACAATAAACGTGAACAGTTGGTATCTTAA
AA sequence Show only first row Show all	>Potri.011G063200.3 pacid=42781569 polypeptide=Potri.011G063200.3.p locus=Potri.011G063200 ID=Potri.011G063200.3.v4.1 annot-version=v4.1 MGSGDWFKTIISIKKVKDDSSKQAKGSSTSEKSNGFKWKHKLQKESASFANGSNRANPRFPDMPVEDLAATRIQTAFRAYRARKTLRCLKGKVRLQIITQ NYSFKKQAATTLNYLHSWSQIQAQIRARRLFMVTEGRLRQKKLENQLKLEAKLHDLEVEWSGGCETMEKILARIHQREEAAVKRERAMAYAFSHQWRASY GHDLGVVNYELGKANWGWSWKERWIATRPWESRVAAKSVSPKKMKGRQANKVDETTKLPTRKTPVSSKPSLFNGKGTPTAQRLSYPPAEKRVSLEGSIKS DAANNKREQLVS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G33990		IQD9	IQ-domain 9 (.1)		Potri.011G063200 [exp]	0	1
AT1G49730			Protein kinase superfamily pro...		Potri.004G140301 [exp]	1.00	0.9002
AT5G50000			Protein kinase superfamily pro...		Potri.015G074400 [exp]	3.87	0.8952
AT3G58170		ATBET11, ATBS14...	ARABIDOPSIS THALIANA BET1P/SFT...		Potri.002G041500 [exp]	5.65	0.8759	Pt-BET11.2
AT3G51850		CPK13	calcium-dependent protein kina...		Potri.016G117200 [exp]	7.87	0.8952	CPK13.2
AT3G50620			P-loop containing nucleoside t...		Potri.005G136900 [exp]	11.66	0.8927
AT5G53560		B5#2, ATB5-A, A...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Potri.013G029600 [exp]	15.42	0.8795
AT5G05620		TUBG2 ,ATGCP2	GAMMA-TUBULIN 2, ARABIDOPSIS T...		Potri.002G167800 [exp]	15.49	0.8839
AT1G20760			Calcium-binding EF hand family...		Potri.002G008300 [exp]	15.65	0.8921
AT1G01225			NC domain-containing protein-r...		Potri.014G101300 [exp]	17.29	0.8808
AT1G78790			unknown protein		Potri.012G090600 [exp]	18.16	0.8635

Compare expression of checked genes

Potri.011G063200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.