Plant FIBer expression Database

Potri.011G063300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G28960 379 / 1e-133 ATNUDX15, ATNUDT15 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 15, nudix hydrolase homolog 15 (.1.2.3.4.5)
AT2G33980 348 / 1e-121 ATNUDT22 nudix hydrolase homolog 22 (.1)
AT5G45940 241 / 3e-80 AtNUDX11, ATNUDT11 Arabidopsis thaliana nudix hydrolase homolog 11, nudix hydrolase homolog 11 (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G053100
[exp]
486 / 4e-176 AT1G28960 387 / 2e-136 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 15, nudix hydrolase homolog 15 (.1.2.3.4.5)
Potri.004G053200
[exp]
293 / 8e-101 AT1G28960 279 / 5e-95 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 15, nudix hydrolase homolog 15 (.1.2.3.4.5)
Potri.004G053300
[exp]
272 / 2e-92 AT2G33980 271 / 1e-91 nudix hydrolase homolog 22 (.1)
Potri.016G121500
[exp]
242 / 4e-80 AT1G28960 234 / 2e-76 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 15, nudix hydrolase homolog 15 (.1.2.3.4.5)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10025424
[exp]
384 / 7e-136 AT1G28960 379 / 3e-133 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 15, nudix hydrolase homolog 15 (.1.2.3.4.5)
Lus10015301
[exp]
365 / 3e-128 AT1G28960 384 / 2e-135 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 15, nudix hydrolase homolog 15 (.1.2.3.4.5)
Lus10041965
[exp]
275 / 4e-93 AT2G33980 255 / 2e-85 nudix hydrolase homolog 22 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0261 NUDIX PF00293 NUDIX NUDIX domain
Representative CDS sequence
>Potri.011G063300.1 pacid=42780851 polypeptide=Potri.011G063300.1.p locus=Potri.011G063300 ID=Potri.011G063300.1.v4.1 annot-version=v4.1
ATGGACTCTTATGGATCACAAAGGCTTGTGGCTTTAGCCCAGCAGCTTCGCTTCTACAAGCCACCCTCTCCATCACCAGATGAAATTGAAGAGCAAAACA
TAGAGGAAAGTGCAGGTAAAGTTGTTTCCCAAGTGGGTTTTCAAGAATCTGCAACCTCAATTTTTAAAGACCGTGAAAGGTTTAGACCCAAAAGAGCTGC
CGTTTTGGTCTGCATCTTTGAAGGTGATGCTGGTGAATTTCGTGTTATTTTGACTAAGAGATCCTCCAGATTGTCTACTCATTCAGGTGAAGTTTCATTA
CCCGGGGGGAAAGTAGATGAGAGAGATAAGGATGATTTTGAAACAGCAACAAGAGAGGCGAAGGAGGAAATTGGGTTGGATCCCTCACTTGTGGATGTTG
TTACCGTTCTTGAACCATTTCTGTCTAAGCACCTCCTCAGAGTAATTCCTGTTATAGGCATCCTCTCCAATAAGAAGGCATTCAAGCCCACTCCAAATCC
TGCTGAAGTGGAAGCAATATTTGATGCTCCCTTGGAAATGTTCATCAAGGATGAAAATCGACGAGTAGAGGAGAGTGAATGGATGGGAGAAAAGTATCTG
ATTCATTTCTTTGACTACGAAACAGAGAATAAAAAGTATTTGATATGGGGTTTAACTGCTGGGATTTTGATTAAAGCTGCTTCGGTGGTCTTCCAACGGC
CACCAGCATTTATGGAGCAGAATCCAAGGTTCAAGTTTCCTAAAGGTGCAAACAAAGATATGGTGATGCGTTGA
AA sequence
>Potri.011G063300.1 pacid=42780851 polypeptide=Potri.011G063300.1.p locus=Potri.011G063300 ID=Potri.011G063300.1.v4.1 annot-version=v4.1
MDSYGSQRLVALAQQLRFYKPPSPSPDEIEEQNIEESAGKVVSQVGFQESATSIFKDRERFRPKRAAVLVCIFEGDAGEFRVILTKRSSRLSTHSGEVSL
PGGKVDERDKDDFETATREAKEEIGLDPSLVDVVTVLEPFLSKHLLRVIPVIGILSNKKAFKPTPNPAEVEAIFDAPLEMFIKDENRRVEESEWMGEKYL
IHFFDYETENKKYLIWGLTAGILIKAASVVFQRPPAFMEQNPRFKFPKGANKDMVMR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G28960 ATNUDX15, ATNUD... ARABIDOPSIS THALIANA NUDIX HYD... Potri.011G063300
[exp]
0 1
AT1G67620 Lojap-related protein (.1) Potri.008G105700
[exp]
1.73 0.8139
AT4G38020 tRNA/rRNA methyltransferase (S... Potri.005G147600
[exp]
4.47 0.8136
Potri.011G126600
[exp]
9.79 0.7837
AT5G14430 S-adenosyl-L-methionine-depend... Potri.001G342300
[exp]
11.48 0.8356
AT4G20280 TAF11 TBP-associated factor 11 (.1) Potri.001G073500
[exp]
15.00 0.7828
AT2G24290 Protein of unknown function (D... Potri.013G026900
[exp]
23.23 0.8150
AT5G64460 Phosphoglycerate mutase family... Potri.001G286000
[exp]
25.37 0.7725
AT4G37760 SQE3 squalene epoxidase 3 (.1) Potri.007G007600
[exp]
26.22 0.7562
AT1G06290 ATACX3, ACX3 acyl-CoA oxidase 3 (.1) Potri.019G092600
[exp]
32.40 0.7537
AT5G19180 ECR1 E1 C-terminal related 1 (.1) Potri.008G204000
[exp]
35.49 0.8119 Pt-ECR1.1

Potri.011G063300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.