Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-CHLI.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45930 605 / 0 CHLI-2, CHLI2 magnesium chelatase i2 (.1) AT4G18480 601 / 0 CHLI-1, CHL11, CH-42, CH42, CHLI1 CHLORINA 42, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G08520 186 / 4e-52 V157, ALB1, ALB-1V, PDE166, CHLD PIGMENT DEFECTIVE EMBRYO 166, ALBINA 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G053400 [exp] 710 / 0 AT5G45930 598 / 0.0 magnesium chelatase i2 (.1) Potri.009G049400 [exp] 190 / 2e-53 AT1G08520 604 / 0.0 PIGMENT DEFECTIVE EMBRYO 166, ALBINA 1 (.1) Potri.001G254304 [exp] 67 / 4e-13 AT1G08520 120 / 3e-32 PIGMENT DEFECTIVE EMBRYO 166, ALBINA 1 (.1) Potri.001G254308 [exp] 59 / 2e-10 AT1G08520 160 / 1e-46 PIGMENT DEFECTIVE EMBRYO 166, ALBINA 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025423 [exp] 661 / 0 AT5G45930 638 / 0.0 magnesium chelatase i2 (.1) Lus10015302 [exp] 654 / 0 AT5G45930 632 / 0.0 magnesium chelatase i2 (.1) Lus10019033 [exp] 190 / 2e-53 AT1G08520 1163 / 0.0 PIGMENT DEFECTIVE EMBRYO 166, ALBINA 1 (.1) Lus10005013 [exp] 188 / 7e-53 AT1G08520 1146 / 0.0 PIGMENT DEFECTIVE EMBRYO 166, ALBINA 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF01078 [poplar] [flax] Mg_chelatase Magnesium chelatase, subunit ChlI
Representative CDS sequence Show only first row Show all	>Potri.011G063400.1 pacid=42782088 polypeptide=Potri.011G063400.1.p locus=Potri.011G063400 ID=Potri.011G063400.1.v4.1 annot-version=v4.1 ATGGCAACTATACTAGGAACTTCTTCCGCTGCAATTTTGGCATATAGACCCTTCTCCAAACCTTCCATTCCTTCTCTCTCTTTAACCTCCTCAGGGCTGA GTTTTGGGAGGGAGTCTTATGGAGGGATTGGTCTTGTGGGTAAGAAAGGGAGGCCTCAGTTTCATGTTGCAGTCGCCTGTGTTGCAACAGACATTGGCTC TGTTGAGGAGGCCCAGAAGCTTGCTTCGAAAGAAAACCAGAGACCAGTGTATCCATTTGCTGCAATAGTAGGGCAAGATGAGATGAAATTATGCCTTTTG TTAAATGTGATTGATCCCAAGATTGGAGGTGTCATGATCATGGGTGATAGAGGAACGGGGAAGTCCACGACTGTTAGGTCCTTGGTTGATTTACTTCCTG AAATTAAGGTAGTTGCTGGTGACCCCTATAATTCAGATCCAGAAGATCCAGAGTCCATGGGTATTGAAGTCAGGGAGAGTGTCGTGAAAGGGGAGAATCT CACTGTTGTCATGACCAAAATTAACATGGTCGATTTGCCATTGGGAGCAACGGAGGATAGGGTTTGTGGGACAATTGACATCGAAAAGGCTCTCACCGAG GGGGTAAAGGCATTTGAGCCTGGTCTTCTTGCTAAAGCTAATAGAGGGATTCTTTATGTTGATGAAGTTAATCTTTTGGATGATCACTTAGTGGATGTTC TATTAGATTCTGCTGCTTCAGGGTGGAACACAGTGGAGAGAGAGGGTATTTCGATTTCACATCCTGCAAGGTTTATTTTGATTGGTTCTGGTAATCCTGA AGAAGGAGAGCTAAGGCCACAGCTACTAGATAGATTTGGAATGCATGCACAAGTGGGGACTGTAAGGGATGCGGAGCTCAGAGTGAAAATCGTGGAAGAG AGAGCTCGATTTGACAAAAATCCAAAGGAATTTCGTCATTCTTACAAGGCAGAGCAAGAGAAACTCCGGCAACAAATTGCCTCAGCTAGGGCTTGTCTTT CATCTGTACAGATAGATCATGATCTGAAGGTTAAAATCTCTAAGGTTTGTGCAGAGCTTAATGTTGATGGATTGAGAGGAGACATCGTGACAAATAGAGC TGCAAAATCCCTCGCTGCCCTGAAGGGTAGGGATCAAGTAACCGCAGAAGATATTGCTACTGTCATCCCCAATTGTTTGAGACATCGTCTTCGGAAGGAT CCATTGGAGTCAATTGACTCAGGTTTACTTGTCATTGAGAAATTTTATGAGGTTTTTAGCTGA
AA sequence Show only first row Show all	>Potri.011G063400.1 pacid=42782088 polypeptide=Potri.011G063400.1.p locus=Potri.011G063400 ID=Potri.011G063400.1.v4.1 annot-version=v4.1 MATILGTSSAAILAYRPFSKPSIPSLSLTSSGLSFGRESYGGIGLVGKKGRPQFHVAVACVATDIGSVEEAQKLASKENQRPVYPFAAIVGQDEMKLCLL LNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPEIKVVAGDPYNSDPEDPESMGIEVRESVVKGENLTVVMTKINMVDLPLGATEDRVCGTIDIEKALTE GVKAFEPGLLAKANRGILYVDEVNLLDDHLVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLDRFGMHAQVGTVRDAELRVKIVEE RARFDKNPKEFRHSYKAEQEKLRQQIASARACLSSVQIDHDLKVKISKVCAELNVDGLRGDIVTNRAAKSLAALKGRDQVTAEDIATVIPNCLRHRLRKD PLESIDSGLLVIEKFYEVFS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G45930		CHLI-2, CHLI2	magnesium chelatase i2 (.1)		Potri.011G063400 [exp]	0	1	Pt-CHLI.1
AT4G18750		DOT4	DEFECTIVELY ORGANIZED TRIBUTAR...		Potri.003G160100 [exp]	6.63	0.8858
AT2G39670			Radical SAM superfamily protei...		Potri.008G056500 [exp]	16.79	0.9041
AT1G03310		ATISA2, ISA2, D...	BRANCHING ENZYME 2, ARABIDOPSI...		Potri.002G219900 [exp]	47.47	0.8838
AT5G66470			RNA binding;GTP binding (.1)		Potri.007G021900 [exp]	51.96	0.8861
AT3G06430		AtPPR2, EMB2750	pentatricopeptide repeat 2, em...		Potri.008G098700 [exp]	59.59	0.8822
AT1G08070		EMB3102, OTP82	ORGANELLE TRANSCRIPT PROCESSIN...		Potri.013G103600 [exp]	60.97	0.8778
AT5G42480		ARC6	ACCUMULATION AND REPLICATION O...		Potri.005G235000 [exp]	65.23	0.8813
AT3G56940		CRD1, CHL27, AC...	COPPER RESPONSE DEFECT 1, dica...		Potri.006G027300 [exp]	79.52	0.8777	Pt-AT103.2
AT1G72040			P-loop containing nucleoside t...		Potri.013G109400 [exp]	82.46	0.8690
AT5G43140			Peroxisomal membrane 22 kDa (M...		Potri.014G017800 [exp]	97.97	0.8655

Compare expression of checked genes

Potri.011G063400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.