Plant FIBer expression Database

Potri.011G063600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G053600
[exp]
156 / 7e-49 ND /
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.011G063600.2 pacid=42782237 polypeptide=Potri.011G063600.2.p locus=Potri.011G063600 ID=Potri.011G063600.2.v4.1 annot-version=v4.1
ATGAAAAACCAAAAAAAAAAAAACACATCCCAAAGGCCAAAACGAAACTTACCAAAAAGTTTCTCCTCCCTCCATCTACGAAAGCCAAAATCAAAATTTA
CTATTTCTCCGAAAACAAAACCACTTCAAAATTTTGTTTTGAAATTCCCCCCCTCCAAAATACCACCATTATGTATGCCCAGTCCTGCCTCTCCCCTTTC
ATCACCACCTCTCTCACGGTATCCCTTGCCAATGGCTGTTCTCTTTCTTAGTCAAGATGACAACAAGGAGAACATCCCTCCTTTCTTTCCAAAGCAAGCT
ACACTAATCACAAAATCCAAATCTCCTCTCCCCACCAGCAATAAAAGAAGAGTCAGGAGGCCACTTGAGGACATTACCACCCTCTTTAATCGAGAAATCT
ATTCAACTTCAGCTCTTGATAACAGGATCTATATTTTTCACTCACTTCCTTCAGCTTGCAAAGTGAGAAGTGGAAAGAGGAGAGCTGAGGATGGTGTTTA
CCCAACCTGCAAGAAGACCACCCAGTTGCTGCATTCCAGCAAAAATTTCAGATAG
AA sequence
>Potri.011G063600.2 pacid=42782237 polypeptide=Potri.011G063600.2.p locus=Potri.011G063600 ID=Potri.011G063600.2.v4.1 annot-version=v4.1
MKNQKKKNTSQRPKRNLPKSFSSLHLRKPKSKFTISPKTKPLQNFVLKFPPSKIPPLCMPSPASPLSSPPLSRYPLPMAVLFLSQDDNKENIPPFFPKQA
TLITKSKSPLPTSNKRRVRRPLEDITTLFNREIYSTSALDNRIYIFHSLPSACKVRSGKRRAEDGVYPTCKKTTQLLHSSKNFR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.011G063600
[exp]
0 1
Potri.004G053600
[exp]
7.34 0.8800
AT3G09430 unknown protein Potri.006G084500
[exp]
8.77 0.9037
AT3G16490 IQD26 IQ-domain 26 (.1) Potri.001G190500
[exp]
8.83 0.8989
AT5G65120 unknown protein Potri.007G090500
[exp]
17.20 0.8989
AT5G65360 Histone superfamily protein (.... Potri.001G016700
[exp]
18.57 0.8590
AT2G37960 unknown protein Potri.006G094600
[exp]
25.29 0.8767
AT3G60660 unknown protein Potri.014G060000
[exp]
25.92 0.8847
AT5G37010 unknown protein Potri.015G147900
[exp]
25.92 0.8840
AT2G32590 EMB2795 EMBRYO DEFECTIVE 2795, unknown... Potri.014G155900
[exp]
26.30 0.8952
AT4G14700 ORC1, ATORC1A, ... origin recognition complex 1 (... Potri.009G054300
[exp]
27.71 0.8408 Pt-ORC1.1

Potri.011G063600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.