Plant FIBer expression Database

Potri.011G064300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G18540 547 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G054500
[exp]
869 / 0 AT4G18540 593 / 0.0 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10036093
[exp]
700 / 0 AT4G18540 621 / 0.0 unknown protein
Lus10013937
[exp]
677 / 0 AT4G18540 549 / 0.0 unknown protein
Lus10008576
[exp]
663 / 0 AT4G18540 551 / 0.0 unknown protein
Lus10036092
[exp]
175 / 2e-52 AT4G18540 120 / 1e-32 unknown protein
Lus10000522
[exp]
90 / 5e-21 AT4G18540 90 / 8e-22 unknown protein
PFAM info
Representative CDS sequence
>Potri.011G064300.1 pacid=42782017 polypeptide=Potri.011G064300.1.p locus=Potri.011G064300 ID=Potri.011G064300.1.v4.1 annot-version=v4.1
ATGCAAAGTCCAGTGAGGTTTTCAAGCTGCCGAGGAGTGGCCTTTGAAATCAAACCTCATGAAAATCCATTTGCCATTACTGCACCATCCAATGATGAGC
TAAAAGGCAGCAAACGAATTTGGTTTCCTTGGCCTCTAGGGAGCTCCTCCAAGGTGTTCCCTTCTTCCATCATCAGGTCAACTAGTAGAGCTAGTAGCCA
TTTCTGTGACCTAGATCTCGATGGTGAAGATGACATTTCTTTGGAAGCATTAGAAGAAGGAAAAGAGGAGCAAAAGGGGCAAAAACTAACTCCATTTCCA
TCCGCAACTAAGAAAGAGCAGCCACCAAAACCTGCTCGAAAGCAAGAATCAAGATTGTCAGTTATTTTGCTGGACCAAGGTTTGTTCACGGTATACAAAC
GACTTTTTGTCGTCTGCTTGACACTGAACATCACTGGTTTGGTACTTGCAGAAACTGGGAAATTCCCATATGCAAGAAATAGAGCTACCCTTTTCTCCAT
AGCCAACATTCTTGCATTGACACTCTGCAGGAGTGAGGCCTTTTTGCGAGTTGTTTTCTGGCTCGCAGTCGAGGTCTTTGGAAGGTCTTGGATCCCTCTT
CCAATAAAAACCGCCACCACATCTCTGCTTCAAAGTCTTGGTGGCATACACAGCAGTTGTGGAATTTCTTCAGTTGCTTGGCTCATATATGCCTTAGTCC
TTACTCTTAAGAACAGAGAAAACACATCGTCAGAGATTATAGCAGTGGCCTCTATTATTCTTTCCCTCCTCTGCCTCTCTTGTCTGGCTGCTTTTCCTCT
CGTCCGCCATCTCCATCACAATGTCTTTGAAAGGTTTCACAGGTTTACTGGATGGACAGCTCTAGCTCTCCTCTGGACCTTTATCATTCTCACTACCTCA
TATGACCCCAAAGCCAAATCCTATAGTAATGAACTAGGCTCCAGGCTTATAAAACAACAAGAGTTTTGGATGACAGCAGCAATCACAATTCTAATTATAA
TCCCATGGATAACAGTGAGAAGAGTTCCTGTCAAAGTATCTGCTCCTTCTAGCCACGCCTCCATTATAAAATTTGAGGGAGGAGTAAAAGCTGGTATATT
GGGAAGGATTAGCCCATCCCCATTATCTGAATGGCACGCTTTCGGTATTATTTCTGATGGGAAGACGGAACATATGATGCTTGCTGGTGCTGTTGGTGAC
TTCACCAAGTCCTTGGTCTCAAACCCGCCAAGCCATTTGTGGGTTAGGCAAGTGCACTTTGCTGGTTTGCCATACCTAGTGAATATGTATGATAGGGTTC
TTTTGGTGGCAACAGGTTCTGGCATTTGTGTTTTCTTATCATTCCTTTTGCAGCCATGTCGAGCCAACGTATGTGTACTTTGGGTGGCCAAAGGGATTGA
ACAAAACTTTGGCAAAGAAATTCAAGATATGATGAGCAGACATCCTAAAGATAAAGTGATTGTGCATGATACAGCAGTGCTCGGTCGGCCCAATGTATCT
GAAATGAGTGTTGAAGCTGCTAAAAAATGGGGCGCTGAAGTTGTCGTTGTTACTAGCAATCCAGAAGGAAGCAGGGATGTCGTTAATTCCTGCAAAGCAG
CAGGGATTGCAGCCTTCGGTCCTATTTGGGATTCCTAG
AA sequence
>Potri.011G064300.1 pacid=42782017 polypeptide=Potri.011G064300.1.p locus=Potri.011G064300 ID=Potri.011G064300.1.v4.1 annot-version=v4.1
MQSPVRFSSCRGVAFEIKPHENPFAITAPSNDELKGSKRIWFPWPLGSSSKVFPSSIIRSTSRASSHFCDLDLDGEDDISLEALEEGKEEQKGQKLTPFP
SATKKEQPPKPARKQESRLSVILLDQGLFTVYKRLFVVCLTLNITGLVLAETGKFPYARNRATLFSIANILALTLCRSEAFLRVVFWLAVEVFGRSWIPL
PIKTATTSLLQSLGGIHSSCGISSVAWLIYALVLTLKNRENTSSEIIAVASIILSLLCLSCLAAFPLVRHLHHNVFERFHRFTGWTALALLWTFIILTTS
YDPKAKSYSNELGSRLIKQQEFWMTAAITILIIIPWITVRRVPVKVSAPSSHASIIKFEGGVKAGILGRISPSPLSEWHAFGIISDGKTEHMMLAGAVGD
FTKSLVSNPPSHLWVRQVHFAGLPYLVNMYDRVLLVATGSGICVFLSFLLQPCRANVCVLWVAKGIEQNFGKEIQDMMSRHPKDKVIVHDTAVLGRPNVS
EMSVEAAKKWGAEVVVVTSNPEGSRDVVNSCKAAGIAAFGPIWDS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G18540 unknown protein Potri.011G064300
[exp]
0 1
AT5G57510 unknown protein Potri.018G094100
[exp]
2.23 0.9953
AT1G35210 unknown protein Potri.005G161700
[exp]
3.00 0.9961
AT5G36160 Tyrosine transaminase family p... Potri.017G014200
[exp]
3.74 0.9945
AT3G61510 AT-ACS1, ACS1 ARABIDOPSIS THALIANA 1-AMINOCY... Potri.002G163700
[exp]
6.92 0.9935 Pt-ACS1.3
AT4G37760 SQE3 squalene epoxidase 3 (.1) Potri.012G121320
[exp]
14.14 0.9917
AT4G15550 IAGLU indole-3-acetate beta-D-glucos... Potri.006G055600
[exp]
16.24 0.9959 Pt-ZOG1.15
AT2G41380 S-adenosyl-L-methionine-depend... Potri.006G042200
[exp]
18.43 0.9903
Potri.003G108301
[exp]
19.39 0.9885
AT1G67920 unknown protein Potri.012G044001
[exp]
19.49 0.9708
AT2G29110 ATGLR2.8 glutamate receptor 2.8 (.1) Potri.001G375166
[exp]
21.63 0.9949

Potri.011G064300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.