Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18550 501 / 3e-177 AtDSEL Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) AT2G31100 430 / 2e-149 alpha/beta-Hydrolases superfamily protein (.1) AT1G06250 419 / 6e-145 alpha/beta-Hydrolases superfamily protein (.1) AT2G42690 319 / 6e-106 alpha/beta-Hydrolases superfamily protein (.1) AT1G51440 298 / 3e-96 alpha/beta-Hydrolases superfamily protein (.1) AT2G30550 279 / 7e-89 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G06800 278 / 1e-88 PLA-I{gamma}1 phospholipase A I gamma 1, alpha/beta-Hydrolases superfamily protein (.1.2) AT1G30370 242 / 1e-74 DLAH DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) AT2G31690 179 / 4e-51 alpha/beta-Hydrolases superfamily protein (.1) AT1G05800 178 / 4e-51 DGL DONGLE, alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G054800 [exp] 687 / 0 AT4G18550 516 / 0.0 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) Potri.004G054600 [exp] 382 / 1e-130 AT4G18550 384 / 1e-131 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) Potri.015G026500 [exp] 359 / 6e-122 AT4G18550 326 / 5e-109 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) Potri.015G026400 [exp] 358 / 2e-121 AT4G18550 330 / 5e-110 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) Potri.003G101800 [exp] 334 / 6e-112 AT2G42690 531 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G051900 [exp] 299 / 6e-97 AT1G51440 700 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G044700 [exp] 296 / 8e-96 AT1G06800 662 / 0.0 phospholipase A I gamma 1, alpha/beta-Hydrolases superfamily protein (.1.2) Potri.005G218500 [exp] 287 / 3e-92 AT1G06800 652 / 0.0 phospholipase A I gamma 1, alpha/beta-Hydrolases superfamily protein (.1.2) Potri.009G057900 [exp] 231 / 1e-70 AT1G30370 626 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013932 [exp] 476 / 5e-168 AT4G18550 427 / 5e-149 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) Lus10017668 [exp] 452 / 3e-158 AT4G18550 420 / 1e-145 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) Lus10000985 [exp] 432 / 5e-152 AT4G18550 375 / 1e-129 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) Lus10013936 [exp] 374 / 1e-127 AT4G18550 345 / 2e-116 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) Lus10013935 [exp] 362 / 4e-123 AT4G18550 337 / 2e-113 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) Lus10017975 [exp] 340 / 4e-114 AT2G42690 524 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10041967 [exp] 305 / 9e-101 AT2G42690 490 / 3e-173 alpha/beta-Hydrolases superfamily protein (.1) Lus10033619 [exp] 271 / 1e-89 AT4G18550 235 / 1e-75 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) Lus10038524 [exp] 238 / 2e-74 AT1G30370 526 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Lus10015521 [exp] 233 / 4e-72 AT1G30370 524 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF01764 [poplar] [flax] Lipase_3 Lipase (class 3)
Representative CDS sequence Show only first row Show all	>Potri.011G064400.1 pacid=42781612 polypeptide=Potri.011G064400.1.p locus=Potri.011G064400 ID=Potri.011G064400.1.v4.1 annot-version=v4.1 ATGCAGAAACTAGCTATCCTCAAAAGGTGGTTTGGCAAGAAGAAAACAATATTGGTGGGTAGCATAGATAAAAGATGGAAACATCTAAGTGGAGAAAACC ATTGGAAGGACCTCCTGGATCCTCTTGATAATGATCTCCGGAGATACATCATTCATTACGGAGAAATGGCTCAGGCTACCTATGACAGTTTCAACGCGCA GAAGGCATCCAAGTATGCAGGAAGCAGCCTGTATGCAAAGGATGACTTTTTTACCAAGGTTCATTTAGAGAAAGGCAATCCATTCAAGTACCGTGTTACC AAATTCTTGTATGCAACATCACAGGTTCAGCTCCCTGAAGCATTCATCGTAAAGTCATTATCGAGGGAGGCATGGAGCAAGGAATCCAATTGGATAGGGT TCGTTGCGGTGGCTACCGATGAAGGGAAGACCACGTTAGGGCGGAGGGATATTGTCATTGCTTGGAGAGGTACGATACGGACCTTAGAGTGGGTTAATGA TTTTGAATTTAATTTTGTCTCAGCTTCAAAAATTCTTGGCGAGTCCGGTGATCCTAAGGTGCACCAAGGTTGGTACTCAATCTACACCTCTGACGACTCG CGTTCACAATACAACAAGAATAGTGCTAGAGACCAGGTTCTTAACGAGGTAAGGAGACTGGTGGATAAATACACAAATGAAGAAATCAGCATAACCATAG TCGGCCACAGCTTAGGAGCTGCAGTTGCAACTCTGAATGCAGTGGATATAGTTGCTAATGGATTTAACCAGTCGCAGAAAAACAAACGCTGTCCCGTCAC AGCCATGCTCTTTGCCAGCCCTCGCGTCGGGGACTCGAACTTCAAGAGGGTTTTCTCCGGATATAAGGATCTTAGAGCATTACGCATTCACAACGTTCGA GACGTTGTTCCTAACTATCCATTGATAGGTTATGCGGATGTAGGAGAAGAATTGGTAATTGATACCACCAAGTCTAAGTACTTGAAGAGCCCTGGAAATC TATCAAGTTGGCATAATTTAGAAGGTTACCTGCATGGAGTGGCAGGAACACAAGGGCCGAAAGGAGGGTTTAAATTAGAGGTCAACCGCGATATTGCTCT TCTTAACAAGACTATTGATAGCTTAAAGGATGAGTATCTTGTACCAGCATCATGGCGGGTCCAAGAAAACAAGGGCATGGTGCAGCAAGCAGATGGTTCC TGGAAGTTGATGGACCTGGAAGAGGATTTTATACCTGAAGAATAA
AA sequence Show only first row Show all	>Potri.011G064400.1 pacid=42781612 polypeptide=Potri.011G064400.1.p locus=Potri.011G064400 ID=Potri.011G064400.1.v4.1 annot-version=v4.1 MQKLAILKRWFGKKKTILVGSIDKRWKHLSGENHWKDLLDPLDNDLRRYIIHYGEMAQATYDSFNAQKASKYAGSSLYAKDDFFTKVHLEKGNPFKYRVT KFLYATSQVQLPEAFIVKSLSREAWSKESNWIGFVAVATDEGKTTLGRRDIVIAWRGTIRTLEWVNDFEFNFVSASKILGESGDPKVHQGWYSIYTSDDS RSQYNKNSARDQVLNEVRRLVDKYTNEEISITIVGHSLGAAVATLNAVDIVANGFNQSQKNKRCPVTAMLFASPRVGDSNFKRVFSGYKDLRALRIHNVR DVVPNYPLIGYADVGEELVIDTTKSKYLKSPGNLSSWHNLEGYLHGVAGTQGPKGGFKLEVNRDIALLNKTIDSLKDEYLVPASWRVQENKGMVQQADGS WKLMDLEEDFIPEE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G18550		AtDSEL	Arabidopsis thaliana DAD1-like...		Potri.011G064400 [exp]	0	1
AT3G21710			unknown protein		Potri.011G135700 [exp]	1.41	0.9339
AT1G34430		EMB3003	embryo defective 3003, 2-oxoac...		Potri.019G084900 [exp]	2.00	0.9310
AT1G36050			Endoplasmic reticulum vesicle ...		Potri.005G168800 [exp]	4.35	0.9186
					Potri.001G297466 [exp]	4.89	0.9278
AT1G48480		RKL1	receptor-like kinase 1 (.1)		Potri.015G035500 [exp]	5.00	0.9155
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Potri.016G088700 [exp]	6.40	0.9394	Pt-FLA11.2
AT3G54750			unknown protein		Potri.016G065600 [exp]	6.48	0.9179
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Potri.001G012500 [exp]	7.41	0.9020
AT3G45400			exostosin family protein (.1)		Potri.019G044600 [exp]	8.48	0.8968
AT1G56340		AtCRT1a, CRT1	calreticulin 1a (.1.2)		Potri.005G015100 [exp]	9.94	0.9218

Compare expression of checked genes

Potri.011G064400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.