Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29070 106 / 8e-30 Ribosomal protein L34 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013928 [exp] 100 / 3e-27 AT1G29070 113 / 2e-32 Ribosomal protein L34 (.1) Lus10000989 [exp] 91 / 6e-22 AT2G34090 231 / 6e-71 maternal effect embryo arrest 18 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00468 [poplar] [flax] Ribosomal_L34 Ribosomal protein L34
Representative CDS sequence Show only first row Show all	>Potri.011G064800.2 pacid=42780916 polypeptide=Potri.011G064800.2.p locus=Potri.011G064800 ID=Potri.011G064800.2.v4.1 annot-version=v4.1 ATGGCTACTTCAATATCATTGATATCGTCATCACCGCCACCTTGGATGGCGTCGAGTCGAACAAGAAGCGATGGCAGCGCATCAGCTTCACTCTCTCTTA TTTCTGGTTCAAGAACGAAAAGGGGTTTTTCAATGAATGTGGCCACCAACTCCACAACTCGCTCAGGGCTGCTTCATTGCTCCTTCCTTCCTTCCTCTTC TCTCTCTCTACCTTCTTCCTTCTCAGGTTTATCTCTGGGATTGGATTTGAATTCTAACATCGGAGTAAGAAAGGATATAGGTCGTGGTCTAGTGGTGAGA GCTGGGAAGGCTGCACTTTGTCTAACCAAGAGAAGCAGGTCCAGAAAGTCTCTGGCTCGGACTCATGGCTTCCGTCGAAGAATGAGAACCACTAGTGGGA GGGCAGTGTTGAAACGTCGACGTGCTAAAGGAAGAAAGGTCCTTTGCACCAAGTCCAATCCCAATAGTGGGAAAGGTTCATAA
AA sequence Show only first row Show all	>Potri.011G064800.2 pacid=42780916 polypeptide=Potri.011G064800.2.p locus=Potri.011G064800 ID=Potri.011G064800.2.v4.1 annot-version=v4.1 MATSISLISSSPPPWMASSRTRSDGSASASLSLISGSRTKRGFSMNVATNSTTRSGLLHCSFLPSSSLSLPSSFSGLSLGLDLNSNIGVRKDIGRGLVVR AGKAALCLTKRSRSRKSLARTHGFRRRMRTTSGRAVLKRRRAKGRKVLCTKSNPNSGKGS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G29070			Ribosomal protein L34 (.1)		Potri.011G064800 [exp]	0	1
AT4G01310			Ribosomal L5P family protein (...		Potri.002G154600 [exp]	2.00	0.9837
AT3G26650		GAPA-1, GAPA	GLYCERALDEHYDE 3-PHOSPHATE DEH...		Potri.002G220566 [exp]	2.64	0.9841
AT5G40950		RPL27	ribosomal protein large subuni...		Potri.001G329500 [exp]	3.74	0.9841	Pt-RPL27.5
AT5G11450		PPD5	PsbP domain protein 5, Mog1/Ps...		Potri.006G246500 [exp]	4.47	0.9753
AT3G14930		HEME1	Uroporphyrinogen decarboxylase...		Potri.001G390800 [exp]	5.74	0.9747
AT1G50900		LTD, GDC1	LHCP translocation defect, Gra...		Potri.001G420900 [exp]	6.24	0.9737
AT3G47070			unknown protein		Potri.009G043600 [exp]	6.70	0.9764
AT1G32470			Single hybrid motif superfamil...		Potri.003G089300 [exp]	7.00	0.9770	gdcH3,Pt-GDCH.3
AT2G28190		CZSOD2, CSD2	copper/zinc superoxide dismuta...		Potri.009G163200 [exp]	7.34	0.9788
AT3G47650			DnaJ/Hsp40 cysteine-rich domai...		Potri.018G068300 [exp]	7.74	0.9723

Compare expression of checked genes

Potri.011G064800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.