Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45890 401 / 3e-140 SAG12 senescence-associated gene 12 (.1) AT2G27420 392 / 9e-137 Cysteine proteinases superfamily protein (.1) AT3G49340 377 / 6e-131 Cysteine proteinases superfamily protein (.1) AT5G50260 374 / 2e-129 CEP1 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1) AT2G34080 368 / 3e-127 Cysteine proteinases superfamily protein (.1) AT3G48340 357 / 1e-122 CEP2 cysteine endopeptidase 2, Cysteine proteinases superfamily protein (.1) AT3G19390 355 / 9e-121 Granulin repeat cysteine protease family protein (.1) AT1G29090 351 / 1e-120 Cysteine proteinases superfamily protein (.1) AT5G43060 346 / 5e-117 Granulin repeat cysteine protease family protein (.1) AT3G48350 341 / 2e-116 CEP3 cysteine endopeptidase 3, Cysteine proteinases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G126100 [exp] 523 / 0 AT5G45890 386 / 2e-134 senescence-associated gene 12 (.1) Potri.005G088600 [exp] 515 / 0 AT5G45890 406 / 8e-142 senescence-associated gene 12 (.1) Potri.005G089100 [exp] 514 / 0 AT5G45890 405 / 1e-141 senescence-associated gene 12 (.1) Potri.013G118400 [exp] 509 / 0 AT5G45890 378 / 2e-131 senescence-associated gene 12 (.1) Potri.007G075300 [exp] 509 / 0 AT5G45890 406 / 6e-142 senescence-associated gene 12 (.1) Potri.007G075900 [exp] 507 / 0 AT5G45890 411 / 7e-144 senescence-associated gene 12 (.1) Potri.007G076100 [exp] 507 / 0 AT5G45890 411 / 7e-144 senescence-associated gene 12 (.1) Potri.007G076000 [exp] 505 / 0 AT5G45890 407 / 2e-142 senescence-associated gene 12 (.1) Potri.013G118200 [exp] 498 / 2e-179 AT5G45890 387 / 2e-135 senescence-associated gene 12 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026362 [exp] 506 / 0 AT5G45890 396 / 2e-138 senescence-associated gene 12 (.1) Lus10028501 [exp] 501 / 6e-180 AT5G45890 391 / 2e-136 senescence-associated gene 12 (.1) Lus10003275 [exp] 501 / 8e-180 AT5G45890 392 / 1e-136 senescence-associated gene 12 (.1) Lus10006542 [exp] 498 / 2e-178 AT5G45890 391 / 2e-136 senescence-associated gene 12 (.1) Lus10020730 [exp] 498 / 2e-178 AT5G45890 392 / 1e-136 senescence-associated gene 12 (.1) Lus10042295 [exp] 497 / 3e-178 AT5G45890 402 / 7e-141 senescence-associated gene 12 (.1) Lus10026073 [exp] 494 / 6e-177 AT5G45890 393 / 5e-137 senescence-associated gene 12 (.1) Lus10020722 [exp] 493 / 2e-176 AT5G45890 392 / 1e-136 senescence-associated gene 12 (.1) Lus10032406 [exp] 492 / 2e-176 AT5G45890 391 / 2e-136 senescence-associated gene 12 (.1) Lus10020723 [exp] 492 / 3e-176 AT5G45890 398 / 3e-139 senescence-associated gene 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [poplar] [flax] Peptidase_CA PF00112 [poplar] [flax] Peptidase_C1 Papain family cysteine protease CL0125 [poplar] [flax] PF08246 [poplar] [flax] Inhibitor_I29 Cathepsin propeptide inhibitor domain (I29)
Representative CDS sequence Show only first row Show all	>Potri.011G064900.1 pacid=42780786 polypeptide=Potri.011G064900.1.p locus=Potri.011G064900 ID=Potri.011G064900.1.v4.1 annot-version=v4.1 ATGGCTTTTATACCAGAAAACAAACTAATCTTTGCAGTGGTCTTACTTCTTGGGCTCTGGACTTCTCATGTCTGGTCACGCTCTCTGTATGAGGCTTCCA TGATGGAGAGACATGAAACATGGATGGCTCAGTATGGACGAGCATATAAAGGCCATGTAGAGAAGGAGAGGCGCTTAAACATATTCAAGAACAACGTGGA GTTCATCGAGTCTTTCAACAAGGTTGGGAAAAAGCCTTACAAGCTAAGTGTCAACGAATTTGCAGATCTTACGAATGAGGAATTCCAGGCCTCGCGCAAT GGATACAAGATGTCCGCTCATTTGAGCTCATCTAGCACCAAGCCTTTCAGGTATGAAAATGTAAGTGCAGTTCCGTCTACCATGGACTGGAGAAAGAAAG GAGCTGTTACCCCTATCAAGGACCAGGGTCAATGCGGCTGTTGCTGGGCATTTTCTGCTGTGGCTGCGACAGAAGGGATTACCCAGCTCTCAACTGGAAA GTTGATATCTCTTTCCGAGCAAGAACTGGTTGATTGTGATACAAGTGGTGAAGACCAAGGTTGTAACGGTGGTCTTATGGATGACGCCTTCGATTTCATC ATTCAGAACAAAGGCCTTACGACTGAAGCCAATTACCCCTACCAGGGAGCTGATGGAGCTTGCAACTCTGGGAAGGCAGCTGCAAAGATCACTGGTTATG AAGACGTGCCTGCCAACAGCGAGGCAGCATTATTGAAGGCAGTAGCCAATCAGCCAGTCTCAGTTGCTATTGATGCTGGTGGATCTGCCTTCCAATTCTA CTCGAGTGGTGTGTTTACTGGAGATTGTGGGACTGATTTAGATCATGGTGTGACTGCTGTTGGGTATGGTATGAGTGATGATGGTACCAAGTACTGGTTA GTCAAGAATTCCTGGGGAACTAGCTGGGGAGAGAATGGATACATAAGAATGGAAAGAGATATTGATGCCCAGGAAGGTCTTTGTGGAATTGCAATGGAAG CTTCGTACCCTACAGCGTAA
AA sequence Show only first row Show all	>Potri.011G064900.1 pacid=42780786 polypeptide=Potri.011G064900.1.p locus=Potri.011G064900 ID=Potri.011G064900.1.v4.1 annot-version=v4.1 MAFIPENKLIFAVVLLLGLWTSHVWSRSLYEASMMERHETWMAQYGRAYKGHVEKERRLNIFKNNVEFIESFNKVGKKPYKLSVNEFADLTNEEFQASRN GYKMSAHLSSSSTKPFRYENVSAVPSTMDWRKKGAVTPIKDQGQCGCCWAFSAVAATEGITQLSTGKLISLSEQELVDCDTSGEDQGCNGGLMDDAFDFI IQNKGLTTEANYPYQGADGACNSGKAAAKITGYEDVPANSEAALLKAVANQPVSVAIDAGGSAFQFYSSGVFTGDCGTDLDHGVTAVGYGMSDDGTKYWL VKNSWGTSWGENGYIRMERDIDAQEGLCGIAMEASYPTA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G45890		SAG12	senescence-associated gene 12 ...		Potri.011G064900 [exp]	0	1
AT1G59740			Major facilitator superfamily ...		Potri.004G064100 [exp]	2.23	0.9987
AT4G12420		SKU5	Cupredoxin superfamily protein...		Potri.008G032200 [exp]	3.74	0.9986
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Potri.018G033500 [exp]	5.19	0.9985	PtrAMT4-2
AT1G68040			S-adenosyl-L-methionine-depend...		Potri.010G104800 [exp]	5.91	0.9982
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Potri.008G212700 [exp]	6.63	0.9984	Pt-BETV1.5
					Potri.003G126200 [exp]	7.34	0.9979
AT1G21270		WAK2	wall-associated kinase 2 (.1)		Potri.004G191450 [exp]	8.94	0.9976
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Potri.003G118700 [exp]	9.79	0.9973
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Potri.008G213669 [exp]	11.22	0.9976
					Potri.001G307100 [exp]	11.31	0.9977

Compare expression of checked genes

Potri.011G064900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.