Plant FIBer expression Database

Potri.011G065000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G34090 623 / 0 MEE18 maternal effect embryo arrest 18 (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10013927
[exp]
662 / 0 AT2G34090 640 / 0.0 maternal effect embryo arrest 18 (.1.2.3)
Lus10000989
[exp]
224 / 5e-68 AT2G34090 231 / 6e-71 maternal effect embryo arrest 18 (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF01933 UPF0052 Uncharacterised protein family UPF0052
Representative CDS sequence
>Potri.011G065000.2 pacid=42780815 polypeptide=Potri.011G065000.2.p locus=Potri.011G065000 ID=Potri.011G065000.2.v4.1 annot-version=v4.1
ATGGCGGACAGTTGTTTGGGACCCCTGATTTCCAAGGCCTCCTCCCCCTCTCTTCTCCTCCACTCTCCTCCTCAATTACTCTTCCCTTTTTCTTCATTCC
CTAAGCCAATACCAAAACCTCTTGTTCTATCCATGACTTCCCTTCAATGCTCCCCCTCCCCCTCTTCCATTTCAAATTCAAGCCCTAGGCCCTCACAACC
CTCCCTCCTCGTCTTCTCAGGGGGTACTGCGTTTAATGGCGTAGTGGAAGAACTGAAGAAATTAACAACGAGTGTTGCTCACGTTCTCCCTGTTTCTGAT
GATGGTGGCAGCACTGCTGAGATTGTCCGCGTGCTCGGTGGTCCTGCGGTTGGAGATATTCGGTCGAGGTGTTTAAGATTGTCTGATCAAAGTAGTGCTG
AAGCTCTTGCTGTCAGAACATTGCTTGGGCATCGCTTACCTCTTGATCCCCAAGATTCCAAATCCCAATGGTATGATATTGTAGGAGGAGAACACTCTTT
ATGGAAAGGCGTATCAAGACCATATAGTGAAACAATTCGAGCTTTTCTTGTTTATTTCCAAAATGAGATCCTGCGTCGGCCTAATGAATCATTTTGCTTT
AGTAATGGCAGCATTGGGAATTTTTTCTTTGCAGGTGCACGCATATTTTTTCAATCTTTAGATGCTGCTATATTTTTATTTTCACGTGTTTCAGATATTC
CAGCAGAAAGTCTGGTTCTTCCAGTCATCTCAACGAATGACAGGCTTACATTAGGATGCGAATTATGGGATGGCACTATTATTCGAGGTCAGAATGAGAT
TTCACATCCAACCAGTGGAACCATGCAACCCGTTGATAAGGGGTGTTCTTCAGTCCCAGCACTTCCTTCAAGAATAAAGAGGGTTTTCTATATGTCAAAT
GAGGGTGGAAACTCACTGCACGAGGTCTTCCCCATGGTAAATGCATCTGTCTTGGACCGATTGAGTAATGTGGATTGTATTGTTTATGCAATGGGATCCC
TCTTTACCTCCGTTTGCCCATCATTGGTGTTACGTGGCATTGGAGAAATTATTTCTTCCAGGAACTGCCCAAAGGTACTTTTGTTGAATGGTACACATGA
TCGAGAGACAAATGGCTTTTCTGCTTCTGGGTTTGTAACTTCCATAACAGACGCCCTAAATCGAAAATATGGAGATACTGATTCTTGTTTGGAAAATTTT
CCAAACCAGTATATCAATACACTTTTAGTTCCCAAAGATGGCCAAATTCCCATAGATGTGCAATGCTTGACTTCCCAAGGGATCTTTGATGTGATCATGG
TTGACTCTGTCTGTGATCCGAAAGTTGGTGTAATATTCAACCCAAAGTCATTGATAGACGCCCTCGCCAATTTGATTGGCAGATAG
AA sequence
>Potri.011G065000.2 pacid=42780815 polypeptide=Potri.011G065000.2.p locus=Potri.011G065000 ID=Potri.011G065000.2.v4.1 annot-version=v4.1
MADSCLGPLISKASSPSLLLHSPPQLLFPFSSFPKPIPKPLVLSMTSLQCSPSPSSISNSSPRPSQPSLLVFSGGTAFNGVVEELKKLTTSVAHVLPVSD
DGGSTAEIVRVLGGPAVGDIRSRCLRLSDQSSAEALAVRTLLGHRLPLDPQDSKSQWYDIVGGEHSLWKGVSRPYSETIRAFLVYFQNEILRRPNESFCF
SNGSIGNFFFAGARIFFQSLDAAIFLFSRVSDIPAESLVLPVISTNDRLTLGCELWDGTIIRGQNEISHPTSGTMQPVDKGCSSVPALPSRIKRVFYMSN
EGGNSLHEVFPMVNASVLDRLSNVDCIVYAMGSLFTSVCPSLVLRGIGEIISSRNCPKVLLLNGTHDRETNGFSASGFVTSITDALNRKYGDTDSCLENF
PNQYINTLLVPKDGQIPIDVQCLTSQGIFDVIMVDSVCDPKVGVIFNPKSLIDALANLIGR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G34090 MEE18 maternal effect embryo arrest ... Potri.011G065000
[exp]
0 1
AT5G48570 ROF2, ATFKBP65 FKBP-type peptidyl-prolyl cis-... Potri.006G033400
[exp]
12.32 0.6622
AT3G14172 unknown protein Potri.013G091900
[exp]
13.71 0.6165
AT1G77490 TAPX thylakoidal ascorbate peroxida... Potri.005G179200
[exp]
16.34 0.6178
AT4G17380 MSH4, ATMSH4 ARABIDOPSIS MUTS HOMOLOG 4, M... Potri.003G078601
[exp]
17.37 0.6193
AT3G52060 Core-2/I-branching beta-1,6-N-... Potri.008G018600
[exp]
21.21 0.5957
AT2G21170 PDTPI, TIM PLASTID ISOFORM TRIOSE PHOSPHA... Potri.004G168000
[exp]
21.90 0.5992
AT3G28920 ZF_HD ATHB34, ZHD9 ZINC FINGER HOMEODOMAIN 9, hom... Potri.017G082900
[exp]
26.83 0.5723
AT3G59780 Rhodanese/Cell cycle control p... Potri.019G097901
[exp]
35.70 0.5785
AT5G35700 FIM2, FIM5 FIMBRIN5, fimbrin-like protein... Potri.014G163100
[exp]
38.49 0.5709
AT3G47390 PHS1 PHOTOSENSITIVE 1, cytidine/deo... Potri.019G054000
[exp]
52.74 0.5845

Potri.011G065000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.