Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15010 294 / 5e-97 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT3G56860 192 / 1e-56 UBA2A UBP1-associated protein 2A (.1.2.3.4.5) AT2G41060 185 / 3e-54 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT2G22090 116 / 2e-29 UBA1A RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT2G19380 97 / 8e-22 RNA recognition motif (RRM)-containing protein (.1) AT1G17640 94 / 5e-21 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT4G24770 93 / 5e-21 CP31, ATRBP33, ATRBP31, RBP31 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) AT5G50250 90 / 3e-20 CP31B chloroplast RNA-binding protein 31B (.1) AT1G76460 89 / 5e-20 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G07810 91 / 6e-20 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G055400 [exp] 539 / 0 AT3G15010 303 / 2e-100 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.001G377400 [exp] 283 / 3e-92 AT3G15010 342 / 2e-114 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.016G048100 [exp] 195 / 2e-59 AT3G15010 181 / 1e-53 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.006G190900 [exp] 194 / 8e-59 AT3G15010 179 / 6e-53 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.016G023800 [exp] 197 / 1e-58 AT3G56860 348 / 1e-115 UBP1-associated protein 2A (.1.2.3.4.5) Potri.006G025600 [exp] 192 / 1e-56 AT3G56860 353 / 2e-117 UBP1-associated protein 2A (.1.2.3.4.5) Potri.001G220600 [exp] 179 / 7e-52 AT3G56860 232 / 1e-70 UBP1-associated protein 2A (.1.2.3.4.5) Potri.005G081600 [exp] 172 / 4e-50 AT2G41060 213 / 8e-65 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.002G179100 [exp] 91 / 1e-20 AT2G46780 275 / 2e-91 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025418 [exp] 329 / 8e-111 AT3G15010 336 / 8e-113 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10015290 [exp] 325 / 4e-109 AT3G15010 335 / 2e-112 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10023817 [exp] 204 / 3e-62 AT3G15010 188 / 5e-56 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10032516 [exp] 199 / 7e-60 AT3G56860 405 / 6e-139 UBP1-associated protein 2A (.1.2.3.4.5) Lus10043016 [exp] 197 / 2e-58 AT3G56860 463 / 1e-160 UBP1-associated protein 2A (.1.2.3.4.5) Lus10021035 [exp] 191 / 4e-55 AT3G15010 182 / 4e-51 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10022889 [exp] 97 / 5e-22 AT4G14300 315 / 9e-105 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10041952 [exp] 95 / 1e-21 AT5G50250 272 / 2e-90 chloroplast RNA-binding protein 31B (.1) Lus10017962 [exp] 92 / 5e-21 AT5G50250 274 / 5e-92 chloroplast RNA-binding protein 31B (.1) Lus10030202 [exp] 92 / 1e-20 AT2G46780 224 / 2e-71 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Potri.011G065200.1 pacid=42781900 polypeptide=Potri.011G065200.1.p locus=Potri.011G065200 ID=Potri.011G065200.1.v4.1 annot-version=v4.1 ATGGACTTCATTAAAAAACGCAAAGCCGACGAAAACGGCAATTCAATCCCCACCGGCACCACTCCCTCATCCCCAATCACGCCACTAACCCCCGAAGAAA TCCGTAAAATCATCGAACCATTTACCAAAGACCAACTATTAGACATCCTCCAATCCGCCACGCTCCACCATTCTGACGTCCTTAACTCTGTCCGTTCCGT AGCCGACGGCGACATATCCCTCCGAAAGCTCTTTATTCGTGGTCTCTCTTCCGAGACAACCTCAGAAACCCTCCGAATTCTCTTTTCTTCGTCCGGAGAA CTCGAAGAAGCTATTGTTATTCACGACAAGAACACAGGTAAATCGAAAGGTTTCGGGTTTATTACATTCAAACATGTAGACGCTGCTATGCTTTCGATTA GAGAACCCAGTAAAAAAATTGATGGAAGGATTACTGTTACGCAATTAGCATCGAATAATTCGAGTACTACTGATGTTTCGTTAAGGAAAGTATATGTTGG GAATGTGCCTTTTGAGGTTAGTTCTGAGAGGTTGTTGGGTTTTTTTTCAATGTATGGTGAGATTGAAGAAGGCCCGCTTGGGTTTGATAAATCGACTGGG AAATCAAAGGGTTTCGCATTTCTTATATACAAGAATGAGGAGGGGGCAAAGGCTGCTATTGCTGATCCTATGAAAAATATTGATGGGCATCAAGTTGTTT GTAAATTTGCTGCTGATAATAGGAAGGTTAATAAGAATAGTCAGGTTGGTGCGATTACACAAACATCACAACCATTAACGTATCCACCGCTAACAGGAAA TTCACAAAATTATGGGCCTGCTAGTACTAATAGCTATCAGATCAATACTTCAATGACGGGTTCTGGATATAATGGATCTTATAGGCATCCGCCATATTTA GGGGCGGGTTTGAATGATGGTGGACTGAATAACGCAGGGGCTTTAATGTATAGGATGCCACAGGCTTCGGGTTCTGGGGTATATCCAGATACCGGGTCTT ATGCATTGCCTCAGCACCAGCAGCCATCGTCAATGTCAATGCCAATGCCGCCTCGATTGCCACATGGAGCTGGAGGGATGTATCAGGGTATGCCACCATA TTACTGA
AA sequence Show only first row Show all	>Potri.011G065200.1 pacid=42781900 polypeptide=Potri.011G065200.1.p locus=Potri.011G065200 ID=Potri.011G065200.1.v4.1 annot-version=v4.1 MDFIKKRKADENGNSIPTGTTPSSPITPLTPEEIRKIIEPFTKDQLLDILQSATLHHSDVLNSVRSVADGDISLRKLFIRGLSSETTSETLRILFSSSGE LEEAIVIHDKNTGKSKGFGFITFKHVDAAMLSIREPSKKIDGRITVTQLASNNSSTTDVSLRKVYVGNVPFEVSSERLLGFFSMYGEIEEGPLGFDKSTG KSKGFAFLIYKNEEGAKAAIADPMKNIDGHQVVCKFAADNRKVNKNSQVGAITQTSQPLTYPPLTGNSQNYGPASTNSYQINTSMTGSGYNGSYRHPPYL GAGLNDGGLNNAGALMYRMPQASGSGVYPDTGSYALPQHQQPSSMSMPMPPRLPHGAGGMYQGMPPYY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G15010			RNA-binding (RRM/RBD/RNP motif...		Potri.011G065200 [exp]	0	1
AT1G30460	C3HZnF	CPSF30, ATCPSF3...	ARABIDOPSIS THALIANA CLEAVAGE ...		Potri.001G357800 [exp]	7.07	0.8542
AT5G16220			Octicosapeptide/Phox/Bem1p fam...		Potri.017G119100 [exp]	7.14	0.8490
AT2G44200			CBF1-interacting co-repressor ...		Potri.006G000200 [exp]	7.14	0.8587
AT2G42520			P-loop containing nucleoside t...		Potri.016G061900 [exp]	8.24	0.7838
AT3G11670		DGD1	DIGALACTOSYL DIACYLGLYCEROL DE...		Potri.006G203200 [exp]	12.96	0.8304
AT1G36370		SHM7	serine hydroxymethyltransferas...		Potri.002G090200 [exp]	16.49	0.8364	SHMT4
AT5G06160		ATO	ATROPOS, splicing factor-relat...		Potri.015G017200 [exp]	18.33	0.8286
AT2G36220			unknown protein		Potri.016G079500 [exp]	21.09	0.8320
AT3G19910			RING/U-box superfamily protein...		Potri.007G073200 [exp]	21.63	0.8275
AT3G15010			RNA-binding (RRM/RBD/RNP motif...		Potri.004G055400 [exp]	21.81	0.8303

Compare expression of checked genes

Potri.011G065200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.