Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29120 580 / 0 Hydrolase-like protein family (.1.2.3.4.5) AT4G25770 289 / 1e-93 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G51180 263 / 2e-84 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G10040 261 / 1e-82 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G096035 [exp] 279 / 1e-89 AT4G25770 502 / 1e-177 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.001G079400 [exp] 264 / 1e-84 AT5G51180 528 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.003G151300 [exp] 261 / 3e-83 AT5G51180 541 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.002G113000 [exp] 256 / 2e-80 AT1G10040 471 / 2e-165 alpha/beta-Hydrolases superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013909 [exp] 590 / 0 AT1G29120 561 / 0.0 Hydrolase-like protein family (.1.2.3.4.5) Lus10001893 [exp] 586 / 0 AT1G29120 558 / 0.0 Hydrolase-like protein family (.1.2.3.4.5) Lus10032496 [exp] 265 / 1e-84 AT5G51180 525 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10006982 [exp] 258 / 2e-81 AT4G25770 432 / 4e-150 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10001320 [exp] 251 / 2e-79 AT4G25770 436 / 1e-152 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10042993 [exp] 251 / 2e-79 AT5G51180 501 / 1e-178 alpha/beta-Hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF05057 [poplar] [flax] DUF676 Putative serine esterase (DUF676)
Representative CDS sequence Show only first row Show all	>Potri.011G065700.1 pacid=42782306 polypeptide=Potri.011G065700.1.p locus=Potri.011G065700 ID=Potri.011G065700.1.v4.1 annot-version=v4.1 ATGGCAACAGCTTCTTCGGCATCGTTATTCCAAGCTGCTCGATATGGATATTCTCCTTCTCCAAGATTTAGTAATAATTGTCATTATAGTGTAAGAAATG GAGGTGTAGCTGTAGGTGTAGGTTCTTCTTCTTCCGCTTCTTCTCCTTCTTCTTCCGCCCACCACGGATTCAACTTCTCTTCTTCTGGTGTAAATAATAA CTGGAAACCCCAAGGCATTAAATCTCAAGCTACGAATACTGCCACTAAAGGAAGATTTTCATCATCCAGCGGCGCAATGAATGGGAAAAGTGAACCTGAT CATCTTCTTGTTCTCGTACATGGCATTTTGGCTAGTCCAAGTGACTGGACATACGTGGAAGCAGAGTTAAAAAGGCGTTTGGGAAAAAACTTTCTAATTT ATGCAAGTTCGTGTAACACCTACACTAAAACATTCTCTGGGATTGATGGAGCAGGAAAGCGACTTGCAGATGAAGTTATGCGAGTTGTACAGAAGAGAGA GAGCCTGAAAAGGATTTCCTTTTTAGCCCATTCTCTAGGTGGCTTGTTTGCAAGACATGCTATTTCTGTGCTTTATTCAGAAATTGCTGTAAATACTGGC CAATCCATTGATGTGGCTGCTGATACTTCGCTGCCTAATTCAAATACAACTTGTTCCTCAAGACGAGGTATGATTGCCGGGTTGGAACCAATTAATTTTA TTACCCTGGCAACTCCACATCTTGGGGTGAGAGGCAGAAAGCAGCTTCCATTTCTCTTGGGTATTCCCATCTTAGAGAAACTTGCTCTTCCAATAGCTCC TATTATTGTGGGTAGAACTGGCAGTCAACTGTTTCTCACTGATGGTAAACCTAACAAACCATCTCTTCTTCTGAGAATGACATCAGACTCTGAAGATGGG AAGTTTTTATCTGCTCTTGGTGCATTTAGATGTCGTATTCTTTATGCAAATGTATCTTATGATCATATGGTTGGTTGGCGTACATCCTCCATAAGGAGAG AGATGGAACTTGTCACGCCCCCTATGCGATCTTTGGATGGTTACAAGCACGTTGTAGATGTTGAATATTGTCCCCCAGTTTCTTCTGACGGCCCCCATTT TCCTCCAGAAGCTGCCAAAGCAAAGGAGGCAGCACAGAACGAGCCCAGCATGAAAAATACAGCAGAGTACCATGAACTCATGGAAGAGGAAATGATAAGT GGCTTGCAGAGGTTGGGATGGAAAAAAGTTGATGTCAGCTTTCACTCAGCATTCTGGCCCTTCTTTGCTCATAACAACATACATGTGAAAAATGAATGGT TTCATAATGCTGGCACTGGGGTGATCTCTCATGTTGCAGACAGCCTAAAGCAACAAGAATCCGCCATGTATATTGCTGCTAGCTTGTAG
AA sequence Show only first row Show all	>Potri.011G065700.1 pacid=42782306 polypeptide=Potri.011G065700.1.p locus=Potri.011G065700 ID=Potri.011G065700.1.v4.1 annot-version=v4.1 MATASSASLFQAARYGYSPSPRFSNNCHYSVRNGGVAVGVGSSSSASSPSSSAHHGFNFSSSGVNNNWKPQGIKSQATNTATKGRFSSSSGAMNGKSEPD HLLVLVHGILASPSDWTYVEAELKRRLGKNFLIYASSCNTYTKTFSGIDGAGKRLADEVMRVVQKRESLKRISFLAHSLGGLFARHAISVLYSEIAVNTG QSIDVAADTSLPNSNTTCSSRRGMIAGLEPINFITLATPHLGVRGRKQLPFLLGIPILEKLALPIAPIIVGRTGSQLFLTDGKPNKPSLLLRMTSDSEDG KFLSALGAFRCRILYANVSYDHMVGWRTSSIRREMELVTPPMRSLDGYKHVVDVEYCPPVSSDGPHFPPEAAKAKEAAQNEPSMKNTAEYHELMEEEMIS GLQRLGWKKVDVSFHSAFWPFFAHNNIHVKNEWFHNAGTGVISHVADSLKQQESAMYIAASL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G29120			Hydrolase-like protein family ...		Potri.011G065700 [exp]	0	1
AT1G55510		BCDH BETA1, BCD...	branched-chain alpha-keto acid...		Potri.003G222800 [exp]	1.41	0.9024
AT5G06130			chaperone protein dnaJ-related...		Potri.006G210500 [exp]	7.41	0.8796
AT1G45230			Protein of unknown function (D...		Potri.002G125700 [exp]	10.90	0.8688
AT5G47860			Protein of unknown function (D...		Potri.001G072400 [exp]	11.57	0.8944
AT1G75380		ATBBD1	bifunctional nuclease in basal...		Potri.002G032500 [exp]	22.13	0.8742
AT5G20300		Toc90	translocon at the outer envelo...		Potri.006G063500 [exp]	22.44	0.8293
AT5G14500			aldose 1-epimerase family prot...		Potri.001G344100 [exp]	22.84	0.8628
AT2G38570			unknown protein		Potri.006G109500 [exp]	23.95	0.8577
AT1G30680			toprim domain-containing prote...		Potri.001G461200 [exp]	24.73	0.8538
AT4G35750			SEC14 cytosolic factor family ...		Potri.002G014700 [exp]	25.98	0.8365

Compare expression of checked genes

Potri.011G065700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.