Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29170 484 / 1e-153 ATSCAR3, WAVE2 WASP \(WISKOTT-ALDRICH SYNDROME PROTEIN\)-FAMILY VERPROLIN HOMOLOGOUS PROTEIN 2, SCAR family protein (.1.2.3) AT2G34150 313 / 5e-92 ATSCAR1, WAVE1, ATRANGAP2 WISKOTT-ALDRICH SYNDROME PROTEIN FAMILY VERPROLIN HOMOLOGOUS PROTEIN 1, SCAR family protein (.1.2) AT4G18600 315 / 6e-89 SCARL, ATSCAR-LIKE, WAVE5 WASP \(WISKOTT-ALDRICH SYNDROME PROTEIN\)-FAMILY VERPROLIN HOMOLOGOUS PROTEIN 5, SCAR family protein (.1) AT2G38440 210 / 5e-55 ITB1, DIS3, SCAR2, WAVE4, ATSCAR2 IRREGULAR TRICHOME BRANCH1, SCAR homolog 2 (.1) AT5G01730 196 / 7e-51 ATSCAR4, WAVE3 SCAR family protein 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G057100 [exp] 1655 / 0 AT1G29170 447 / 3e-139 WASP \(WISKOTT-ALDRICH SYNDROME PROTEIN\)-FAMILY VERPROLIN HOMOLOGOUS PROTEIN 2, SCAR family protein (.1.2.3) Potri.006G105800 [exp] 207 / 3e-54 AT2G38440 427 / 2e-126 IRREGULAR TRICHOME BRANCH1, SCAR homolog 2 (.1) Potri.016G129000 [exp] 204 / 4e-53 AT2G38440 444 / 2e-130 IRREGULAR TRICHOME BRANCH1, SCAR homolog 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013904 [exp] 390 / 1e-116 AT2G34150 300 / 6e-87 WISKOTT-ALDRICH SYNDROME PROTEIN FAMILY VERPROLIN HOMOLOGOUS PROTEIN 1, SCAR family protein (.1.2) Lus10001897 [exp] 390 / 2e-116 AT1G29170 305 / 1e-88 WASP \(WISKOTT-ALDRICH SYNDROME PROTEIN\)-FAMILY VERPROLIN HOMOLOGOUS PROTEIN 2, SCAR family protein (.1.2.3) Lus10029437 [exp] 202 / 2e-52 AT5G01730 410 / 6e-119 SCAR family protein 4 (.1) Lus10022757 [exp] 188 / 3e-48 AT2G38440 431 / 1e-127 IRREGULAR TRICHOME BRANCH1, SCAR homolog 2 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.011G066100.1 pacid=42781030 polypeptide=Potri.011G066100.1.p locus=Potri.011G066100 ID=Potri.011G066100.1.v4.1 annot-version=v4.1 ATGCCTTTGGTTCGGTTTGAAGTGAGAAATGAGTTGAGGTTAGGACAGGGTGAGCTGTGCAGAGAAGCAAACCGTGAAGAAGATCCAAAAGCCGTGCTTG ATGCTGTTGCTGCTGCTGCTTTGGTTGGGATCTTGCGTCAACTAGGCGATCTTGCCGAATTTGCAGCAGAGGTTTTCCATGGCTTACAAGAGCAAGTGAT GTCTACAGCTTCTAGAAGTCATAAATTGATGGTTCGTGTGCAAAACATTGAAGTTGCACTCCCTCCTCTTGAAAAGGTGGTGCTTTCCCAAACAAGTCAT ATACATTTTGCGTACACAGCTGGTTCTGAGTGGCACCCTTGTATTCAAAATGAACAAAATCATTTCATCTACAATGACCTGCCACGATTCATTATGGATT CCTATGAAGAATGTCGTGATCCTCCACGTTTGCACTTGCTCGACAAATTTGACACTGGTGGGCCAGGGTCTTGTTTAAAGAGATATTCAGATCCGACCTT CTTTAGGAGAGCATCTAGTAATGCCACTGAACCAGATGCTGTGAAAGTTCCAAAAGATAAGAGAGCTAGGGAAACCAAGAAAAAACATTCATCACAGAGG AACAGAGACTCGGCCCATCATGCATCAATGTCAAATCATAGTGGCAGAATGCAGTTTACTACTCCAACTATTAATGGACAGACCACTCCTTCTCATACGG CCTCTACAACTGACATGACATTAAAATATGACGCGGGTGATCCTTCAAATTCTTTTGATTCAAGAACTGGTTCAGGGTATGTTGAATGTGTGTTCCAACT AAATTCCTCAGTGCGAGCTGAAGAAGATGGACTGAAGGAATTCTCTTCAAGTTTCATGAAGCGCAATGATGTTCGTGGTTCAGTTTTTCCCGACAGACAA CCTGACATTGCAGATAACAATTTTCATCACATTTCTTCACCAGAGCAGATTGCTGCCCTTAGTTCTTCTTGTGTTACTTGGGATGAAAAGGCAGAAATAG TAGAGCCTAGAGGTCAACATGGTGATGAAGTTTCAGAAATGCATGCTGCAGAGTCTGACCTAGATACACAGGATGGATTGACTGCCAATCTTAAAAATCC TAATCCTCAAAATATTGTTCTTGATGATGCAAATACTCCAAAATCAAGCTCTAGTAACAGCCAGCTCGACGAGGTTGAAAGCGAACCAGATGATTTCATG GATGCATTGAACACCATTGAGTCAGAATCTGAAAATGATAGTGATTGCCAAACAAAACATGAAGTTGAGCAATTTTCCTCCAATGTTGACAATGAAGTAG AGGAGACAATACACAAGGTAACAGCACATATTTCAGACCATCATCCATCTGAATATGAATCCCGTACCTTATCCACTTCCTCGAATGAAAACATTCCCTG TGAATCACCCAACTCAGTTTCCTCAAAGAGTTTTGCCCATGAACAGGAATATCATATTTCTGGAAAATCTTCCAAGTTAGACAGTTCACCAGGCATCAAA TTTTCTACAAGTGCTGATGCCATTGATAATTCAAAAGTAGAATTTGTTAGTGATCCATCATCTTCTGTCTCTGCAACTTCAATTTTAAATGTACAAGAAC CACTGAGCAATAAATCCATAAGAAGTTCCAATAGGTCTCAAGAATCCCAGGCTGATTTTTCCAGTGTTCATTCTACGACATTCTGGACAAATGGTGGCCT TTTAGGACTTGAGCCTTCAAAGCCTCCAGATTTTGCCGTATCAAATGCCACGAGTCCAGATTATGTGACCAGAAGTGAAGGTGAGGCAGGGCTGCCTCCA AATCACACTTCCATGTCAAGCAATGATGGAGGAGCACCTGGAAGATTGATCAAGGATGCAGGAAACATGGAAAGGGTTCCAAGTTCCAAAGGCTCCTCAT CATTGCAGGAGGATCAAGGGACCAAAGTAGAAAAACCTGGTGATTTTCATCATGGAAATAAATATAGTCCTAGTTATGAGGATGGACAGAAAATTACCAC TGCAGTAACACCAGGAAATGAGTCGCAGCATGATTCAGACTCCAAAGTGACGCCTATTGAGTCCAGTCAGGATAATGATGAAAATTCATCACAAAGGCAT GGATTTGGACATGGGTTACTTGTTAATGGTTTTAGTAGAAAGATGTCATTGGTCCATGATGGTGAATGTGAACCAACTAGGTTACTGAGAACTAGTACAT TAGAGCAGCAGAGCTGGCGAAATGAAGTTACACATCAAGCAACTCCAGAGAAAGCATACAATGAGCAGTTTGGAAGTAAATATTCTATTGATTCACTTAT GTCTTCACCACCATTGGAACATATGAAAATATCTTTCCACCCTATCAATGGCTTTGAGGATTCTAAACTGAAACTGAAGTTTCCTGATGGGAACCACTGT AATGCAAGCATTAGAGACATGTTTCCATCATTTCAATTGATTCCGGAGACTGCTATTCCACCGCGCCATGTGGGTTCTGAATCTGATGATGATACGTTCT GTAGATCATCTCCTTATATGTCTGATGATTGTCTTAGCCATGACTCTGAATCACATTCTGATCAGTGGGAATCTGACGAGTCTCCTGAAAGCAAGGACCA TGAGTTGTATGATGCTTCGCGCAGAATATTTCCAGGTGAATCTTTTTCAAGCTCACCGCAGCCTGGGGAAGCTGGCAATAATGGTATTTGCGTTGACAGG GGACTTCCAGGCATGTATACTGAGAATGGTGCAGATGATCTATCTGCTTCATTGGATCTGCCATGTTTTGATGCCATGAACCCTGTAGTGAATGGAAAAA CAAGGGATAATTTAGTTCAAACGAATCAAATAGAGTTGGAGCATCTTAACGATTCCACTCCATTGCCACCACCTCTTCCTCCAGTTCAATGGAGAGTTTC AAAGCCCCACTCTGGTATATCAGAAGGCAAACAACATTCTCTATCCAAAGTTCATGAACATGCATTTGATATAAAACCTTTGGAATCTACTGTGCCCCAG CAACCTAAGCCTGCCCCAGCTGTTGAACAGAAAATGAAAGAGGATACTATTGCATTTAAACCTAAAAGCAAGCAACAGGACCAGCAGGAGTTCAATTGCC AGAAAGAAGCTAATCAATCTGCAAATGGCAAGGATATAGATGAAAAGGAAGATTTCTTGCATCAAATCAGAACCAAATCATTCACTCTGAGACGCACCGC AACAGCAAAGCCTACTACTCTCTTCTCAGGTCCCACTGCGAGCAACAAAGTCAGTGCTATTTTGGAGAAAGCAAACGCAATCCGCCAGGCTGTTGCGAGT GATGATGGGGAAGATGATGATACTTGGAGTGACACTTGA
AA sequence Show only first row Show all	>Potri.011G066100.1 pacid=42781030 polypeptide=Potri.011G066100.1.p locus=Potri.011G066100 ID=Potri.011G066100.1.v4.1 annot-version=v4.1 MPLVRFEVRNELRLGQGELCREANREEDPKAVLDAVAAAALVGILRQLGDLAEFAAEVFHGLQEQVMSTASRSHKLMVRVQNIEVALPPLEKVVLSQTSH IHFAYTAGSEWHPCIQNEQNHFIYNDLPRFIMDSYEECRDPPRLHLLDKFDTGGPGSCLKRYSDPTFFRRASSNATEPDAVKVPKDKRARETKKKHSSQR NRDSAHHASMSNHSGRMQFTTPTINGQTTPSHTASTTDMTLKYDAGDPSNSFDSRTGSGYVECVFQLNSSVRAEEDGLKEFSSSFMKRNDVRGSVFPDRQ PDIADNNFHHISSPEQIAALSSSCVTWDEKAEIVEPRGQHGDEVSEMHAAESDLDTQDGLTANLKNPNPQNIVLDDANTPKSSSSNSQLDEVESEPDDFM DALNTIESESENDSDCQTKHEVEQFSSNVDNEVEETIHKVTAHISDHHPSEYESRTLSTSSNENIPCESPNSVSSKSFAHEQEYHISGKSSKLDSSPGIK FSTSADAIDNSKVEFVSDPSSSVSATSILNVQEPLSNKSIRSSNRSQESQADFSSVHSTTFWTNGGLLGLEPSKPPDFAVSNATSPDYVTRSEGEAGLPP NHTSMSSNDGGAPGRLIKDAGNMERVPSSKGSSSLQEDQGTKVEKPGDFHHGNKYSPSYEDGQKITTAVTPGNESQHDSDSKVTPIESSQDNDENSSQRH GFGHGLLVNGFSRKMSLVHDGECEPTRLLRTSTLEQQSWRNEVTHQATPEKAYNEQFGSKYSIDSLMSSPPLEHMKISFHPINGFEDSKLKLKFPDGNHC NASIRDMFPSFQLIPETAIPPRHVGSESDDDTFCRSSPYMSDDCLSHDSESHSDQWESDESPESKDHELYDASRRIFPGESFSSSPQPGEAGNNGICVDR GLPGMYTENGADDLSASLDLPCFDAMNPVVNGKTRDNLVQTNQIELEHLNDSTPLPPPLPPVQWRVSKPHSGISEGKQHSLSKVHEHAFDIKPLESTVPQ QPKPAPAVEQKMKEDTIAFKPKSKQQDQQEFNCQKEANQSANGKDIDEKEDFLHQIRTKSFTLRRTATAKPTTLFSGPTASNKVSAILEKANAIRQAVAS DDGEDDDTWSDT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G29170		ATSCAR3, WAVE2	WASP \(WISKOTT-ALDRICH SYNDROM...		Potri.011G066100 [exp]	0	1
AT5G06390		FLA17	FASCICLIN-like arabinogalactan...		Potri.010G198250 [exp]	1.73	0.9379
AT5G06390		FLA17	FASCICLIN-like arabinogalactan...		Potri.019G008400 [exp]	3.00	0.9081
AT1G13900			Purple acid phosphatases super...		Potri.010G160500 [exp]	4.00	0.9032
AT1G27850			unknown protein		Potri.008G178600 [exp]	4.24	0.8743
AT1G24030			Protein kinase superfamily pro...		Potri.008G145900 [exp]	5.29	0.8579
AT5G06390		FLA17	FASCICLIN-like arabinogalactan...		Potri.010G244900 [exp]	6.00	0.9138
AT1G71010		FAB1C	FORMS APLOID AND BINUCLEATE CE...		Potri.008G128800 [exp]	8.30	0.8434
AT1G19170			Pectin lyase-like superfamily ...		Potri.018G062700 [exp]	10.81	0.8598
AT5G06390		FLA17	FASCICLIN-like arabinogalactan...		Potri.006G200300 [exp]	13.03	0.8838
AT2G35630		GEM1, MOR1	MICROTUBULE ORGANIZATION 1, AR...		Potri.001G443200 [exp]	13.74	0.8352	MOR2,Pt-MOR1.2

Compare expression of checked genes

Potri.011G066100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.