Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78830 387 / 2e-131 Curculin-like (mannose-binding) lectin family protein (.1) AT1G78820 373 / 3e-126 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) AT1G78860 367 / 7e-124 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) AT1G78850 359 / 6e-121 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) AT1G16905 331 / 5e-110 Curculin-like (mannose-binding) lectin family protein (.1) AT5G35370 100 / 2e-22 S-locus lectin protein kinase family protein (.1) AT2G19130 94 / 2e-20 S-locus lectin protein kinase family protein (.1) AT3G12000 93 / 2e-20 S-locus related protein SLR1, putative (S1) (.1) AT4G32300 94 / 4e-20 SD2-5 S-domain-2 5 (.1) AT1G61370 90 / 5e-19 S-locus lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G110500 [exp] 473 / 1e-165 AT1G78850 404 / 8e-139 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) Potri.011G110200 [exp] 471 / 3e-165 AT1G78860 398 / 4e-136 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) Potri.011G110000 [exp] 466 / 5e-163 AT1G78850 424 / 1e-146 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) Potri.011G110300 [exp] 431 / 3e-149 AT1G78860 404 / 1e-138 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) Potri.001G391300 [exp] 427 / 8e-148 AT1G78850 391 / 2e-133 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) Potri.010G005900 [exp] 423 / 4e-146 AT1G78850 371 / 1e-125 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) Potri.001G391200 [exp] 340 / 4e-115 AT1G78860 296 / 2e-98 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) Potri.004G061900 [exp] 132 / 4e-33 AT4G32300 402 / 3e-126 S-domain-2 5 (.1) Potri.016G102500 [exp] 111 / 4e-26 AT1G34300 360 / 1e-111 lectin protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000579 [exp] 379 / 1e-128 AT1G78850 387 / 7e-132 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) Lus10022495 [exp] 377 / 6e-128 AT1G78860 363 / 1e-122 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) Lus10024348 [exp] 115 / 2e-27 AT2G19130 378 / 4e-118 S-locus lectin protein kinase family protein (.1) Lus10024343 [exp] 109 / 2e-25 AT2G19130 379 / 6e-117 S-locus lectin protein kinase family protein (.1) Lus10032944 [exp] 106 / 2e-24 AT2G19130 371 / 1e-115 S-locus lectin protein kinase family protein (.1) Lus10004283 [exp] 104 / 1e-23 AT2G19130 339 / 6e-104 S-locus lectin protein kinase family protein (.1) Lus10000249 [exp] 96 / 8e-21 AT4G32300 949 / 0.0 S-domain-2 5 (.1) Lus10002917 [exp] 95 / 1e-20 AT4G32300 950 / 0.0 S-domain-2 5 (.1) Lus10029802 [exp] 84 / 5e-17 AT2G19130 729 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10018405 [exp] 83 / 1e-16 AT4G21380 952 / 0.0 receptor kinase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [poplar] [flax] S_locus_glycop S-locus glycoprotein domain PF01453 [poplar] [flax] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Potri.011G066200.1 pacid=42780637 polypeptide=Potri.011G066200.1.p locus=Potri.011G066200 ID=Potri.011G066200.1.v4.1 annot-version=v4.1 ATGTCTCGGTTTTCATCTTCAATATCTCGTTCCTTCAAGATTTTCTTCTTTTTCTTCAATTTTTCCTTCTTAGCCTATGCCACTGTCCCCTCCTCCAAGA CTTTCAAATACATCAATCAAGGTGAATTTGGGGAATATAGTGTTGAATACTTGGCAGATTACCGTGTCTTGCCCCTTTCTACATTTCCCTTTCAACTTTG CTTCTACAACACCACCCCAAATGCTTACACCCTCGGACTACGCATGGGCCATCGTCGGTCTGAGTCCATAATGCGCTGGGTCTGGGACGCCAATCGTGGT AAGCCAGTTCATGAAAATGCAACCCTAAGCTTCAAACGAGACGGGAACCTAATCCTAACTGATTTTGATGGCACTATAGCATGGCAAACTGGCACCGCAA ACAAGGGTGTGGTGGGTCTCAACTTGCTTCCAGATGGTAATTTGGTTTTGTATGATCAAAGGGGTAAATTTATTTGGCAGAGTTTTGATCACCCAACAGA CACACTACTGGTAGGTCAAAACTTGCGTTCCAGTGGCCCAAATAGGCTTGTTAGTCGCGTCTCTAACATGGATGGCTCACTAGGGCCTTACAGCTTTGTA ATGGAGCAACGGTATTGGGCCTTGTACTATAAGGTTAAAAATTCACCAAAACCTTTGCTTTATTACAAGTCCGATGAGTTTGGTAATGGCCAAGGTTCAT TGGCACATCTCAATTTTTACTGCAAACCCGAGTACGAACAAGCCTATGCTTTTGAGGTAGGATTTACTTACGACATGAACAACTCTCCTAGCTCTGGCAC TTACATTCTGACTAGGCCAAAATACAATAGCACATACTCAATGCTCCGTTTGGAATCTGATGGTAACTTGAAAATTTATACTTACAATGAAAATGTGGAT TGGGGAGCTTGGGACTTGACATTCAAGCTCTTTGATAGAGATAGTGATCTCGAAATTAGTGAGTGCAAGTTACCACAAAGGTGTGGTTCACTAGGAGTTT GTGAGGACAACCAATGTGTGGCTTGCCCTAGGCCGCAAGGATTTTTGGGGTGGAGCAAGAGCTGCGCACCACCAGTGCTGCCACCGTGCAAAGGCGGAGC CAACGTGGATTACTACAAAGTCGTGGGTGTTGAGCATTTCTTGAACGGGTATAATGAAGGAGAGGGCCCCATGAAGTTGGTTGATTGCAGGAACAAGTGC AACAATGATTGTGGGTGCTTGGGATTTTTCTACAAAGAGGAGTCTTCCAAGTGTTTGTTGGCTCCTGTGCTTGGCACTCTGGTCGGTGTTTCCAGTCCGT CCCATGTTGGCTTTATCAAAATGTCCAAATAG
AA sequence Show only first row Show all	>Potri.011G066200.1 pacid=42780637 polypeptide=Potri.011G066200.1.p locus=Potri.011G066200 ID=Potri.011G066200.1.v4.1 annot-version=v4.1 MSRFSSSISRSFKIFFFFFNFSFLAYATVPSSKTFKYINQGEFGEYSVEYLADYRVLPLSTFPFQLCFYNTTPNAYTLGLRMGHRRSESIMRWVWDANRG KPVHENATLSFKRDGNLILTDFDGTIAWQTGTANKGVVGLNLLPDGNLVLYDQRGKFIWQSFDHPTDTLLVGQNLRSSGPNRLVSRVSNMDGSLGPYSFV MEQRYWALYYKVKNSPKPLLYYKSDEFGNGQGSLAHLNFYCKPEYEQAYAFEVGFTYDMNNSPSSGTYILTRPKYNSTYSMLRLESDGNLKIYTYNENVD WGAWDLTFKLFDRDSDLEISECKLPQRCGSLGVCEDNQCVACPRPQGFLGWSKSCAPPVLPPCKGGANVDYYKVVGVEHFLNGYNEGEGPMKLVDCRNKC NNDCGCLGFFYKEESSKCLLAPVLGTLVGVSSPSHVGFIKMSK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G78830			Curculin-like (mannose-binding...		Potri.011G066200 [exp]	0	1
AT4G21410		CRK29	cysteine-rich RLK (RECEPTOR-li...		Potri.011G029000 [exp]	2.00	0.9534
AT4G35220			Cyclase family protein (.1)		Potri.001G301700 [exp]	5.09	0.9463
AT4G21410		CRK29	cysteine-rich RLK (RECEPTOR-li...		Potri.011G029700 [exp]	5.19	0.9438
AT5G54380		THE1	THESEUS1, protein kinase famil...		Potri.005G108300 [exp]	6.92	0.9347
					Potri.016G002900 [exp]	7.61	0.9021
AT1G11310		PMR2, ATMLO2, M...	POWDERY MILDEW RESISTANT 2, MI...		Potri.002G007000 [exp]	8.00	0.9424
AT3G50700	C2H2ZnF	ATIDD2	indeterminate(ID)-domain 2 (.1...		Potri.001G069948 [exp]	8.66	0.9379
AT2G40070			unknown protein		Potri.010G177000 [exp]	11.22	0.9372
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Potri.001G134400 [exp]	11.74	0.9376
AT3G10720			Plant invertase/pectin methyle...		Potri.008G011100 [exp]	16.43	0.9281

Compare expression of checked genes

Potri.011G066200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.