Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29260 379 / 6e-134 PEX7, ATPEX7 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1) AT4G35050 87 / 9e-20 NFC3, MSI3 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) AT5G58230 82 / 3e-18 MSI1, MEE70, ATMSI1 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) AT5G25150 81 / 8e-18 TAF5 TBP-associated factor 5 (.1) AT2G16780 80 / 2e-17 MSI02, NFC2, NFC02, MSI2 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2, MULTICOPY SUPPRESSOR OF IRA1 2, Transducin family protein / WD-40 repeat family protein (.1) AT2G41500 80 / 2e-17 EMB2776, LIS LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) AT3G49660 76 / 3e-16 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT2G05720 76 / 3e-16 Transducin/WD40 repeat-like superfamily protein (.1) AT2G32950 77 / 4e-16 FUS1, EMB168, DET340, ATCOP1, COP1 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) AT1G61210 73 / 7e-15 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G057600 [exp] 421 / 1e-150 AT1G29260 556 / 0.0 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1) Potri.007G009500 [exp] 86 / 8e-20 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.004G175300 [exp] 87 / 9e-20 AT2G16780 593 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2, MULTICOPY SUPPRESSOR OF IRA1 2, Transducin family protein / WD-40 repeat family protein (.1) Potri.018G020200 [exp] 86 / 2e-19 AT5G25150 984 / 0.0 TBP-associated factor 5 (.1) Potri.005G148500 [exp] 83 / 7e-19 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G263400 [exp] 84 / 1e-18 AT5G25150 1018 / 0.0 TBP-associated factor 5 (.1) Potri.009G135100 [exp] 82 / 4e-18 AT2G16780 612 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2, MULTICOPY SUPPRESSOR OF IRA1 2, Transducin family protein / WD-40 repeat family protein (.1) Potri.002G216200 [exp] 81 / 1e-17 AT5G58230 784 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.014G179700 [exp] 81 / 1e-17 AT5G58230 790 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007274 [exp] 378 / 1e-133 AT1G29260 529 / 0.0 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1) Lus10029221 [exp] 380 / 7e-133 AT1G29260 531 / 0.0 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1) Lus10005074 [exp] 86 / 2e-19 AT4G35050 590 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) Lus10039636 [exp] 84 / 3e-19 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10027848 [exp] 85 / 4e-19 AT4G35050 585 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) Lus10024447 [exp] 83 / 2e-18 AT5G25150 1006 / 0.0 TBP-associated factor 5 (.1) Lus10020917 [exp] 82 / 3e-18 AT5G58230 696 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10020916 [exp] 81 / 1e-17 AT5G58230 782 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10033460 [exp] 81 / 1e-17 AT5G58230 781 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10033459 [exp] 81 / 1e-17 AT5G58230 723 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Potri.011G066600.2 pacid=42781601 polypeptide=Potri.011G066600.2.p locus=Potri.011G066600 ID=Potri.011G066600.2.v4.1 annot-version=v4.1 ATGGCTCTGTCAAGCTCCGTCGACTACAACCCCACTCGCCGCGATTCTTTCATCACCTCTTCCTGGGATGATACCATTAAATTATGGACCCTTGACAGGC CGGCGAGCATTCGTACGTTTAAAGAACACGCGTACTGTGTTTATTCTGCTGCGTGGAACCCTAGGCATACGGATGTTTTTGCATCTGCTTCAGGGGATTG TACTGTGCGAATCTGGGACGTGCGTGAGCCTGGAAGTACGATGATAATTCCAGGTCATGATTTTGAGATTTTGTGTTGTGATTGGAATAAATATGATGAT TGTATTATTGCTACTGCATCGGTGGATAAGAGTATAAGAGTTTGGGATGTGCGGAGTTTTAGAGCTCCGATCTCGGTTTTGAGCGGACATGGGAATGCCG TTAAAAAAGTTAAGTTTTCTCCCCATCATAGGAATTTTATGGTTTCCTGTTCTTATGATATGACTGTTTGTATGTGGGACTTTATGGTGGAGGATGCATT GGTGGGGAGGTATGATCATCATACTGAGTTTGCTGTGGGGGTTGATATGAGTGTCCTAGTTGATGGGTTGTTGGCAAGCACAGGGTGGGATGAGTTGGTT TATGTTTGGCAACATGGGACGGACCCGAGAGCACCTTGA
AA sequence Show only first row Show all	>Potri.011G066600.2 pacid=42781601 polypeptide=Potri.011G066600.2.p locus=Potri.011G066600 ID=Potri.011G066600.2.v4.1 annot-version=v4.1 MALSSSVDYNPTRRDSFITSSWDDTIKLWTLDRPASIRTFKEHAYCVYSAAWNPRHTDVFASASGDCTVRIWDVREPGSTMIIPGHDFEILCCDWNKYDD CIIATASVDKSIRVWDVRSFRAPISVLSGHGNAVKKVKFSPHHRNFMVSCSYDMTVCMWDFMVEDALVGRYDHHTEFAVGVDMSVLVDGLLASTGWDELV YVWQHGTDPRAP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G29260		PEX7, ATPEX7	ARABIDOPSIS PEROXIN 7, peroxin...		Potri.011G066600 [exp]	0	1
AT5G51100		FSD2	Fe superoxide dismutase 2 (.1)		Potri.012G112301 [exp]	3.16	0.7416
AT5G17400		ER-ANT1	endoplasmic reticulum-adenine ...		Potri.012G062500 [exp]	12.12	0.6907
AT5G64580		EMB3144	EMBRYO DEFECTIVE 3144, AAA-typ...		Potri.005G059700 [exp]	13.49	0.7700
AT1G21640		ATNADK2, NADK2,...	NAD kinase 2 (.1.2)		Potri.005G182600 [exp]	15.96	0.7733	Pt-NADK2.1
AT2G42620		PPS, PP2, ORE9,...	PLEIOTROPIC PHOTOSIGNALING, OR...		Potri.011G066700 [exp]	18.89	0.7338
AT1G30520		AAE14	acyl-activating enzyme 14 (.1)		Potri.011G164100 [exp]	19.07	0.7552
AT5G62270			unknown protein		Potri.017G017901 [exp]	21.49	0.7255
AT1G49950	MYB	ATTRB1, TRB1	telomere repeat binding factor...		Potri.001G292700 [exp]	22.60	0.6367
AT1G23180			ARM repeat superfamily protein...		Potri.010G110200 [exp]	23.74	0.7571
AT1G15060			Uncharacterised conserved prot...		Potri.012G053700 [exp]	26.83	0.6270

Compare expression of checked genes

Potri.011G066600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.