Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42620 717 / 0 PPS, PP2, ORE9, MAX2 PLEIOTROPIC PHOTOSIGNALING, ORESARA 9, MORE AXILLARY BRANCHES 2, RNI-like superfamily protein (.1) AT4G15475 50 / 4e-06 F-box/RNI-like superfamily protein (.1) AT2G25490 49 / 7e-06 FBL6, EBF1 EIN3-binding F box protein 1 (.1) AT1G21410 47 / 4e-05 SKP2A F-box/RNI-like superfamily protein (.1) AT5G27920 46 / 0.0001 F-box family protein (.1) AT5G23340 44 / 0.0003 RNI-like superfamily protein (.1) AT5G01720 44 / 0.0004 RNI-like superfamily protein (.1) AT1G47056 43 / 0.0007 VFB1 VIER F-box proteine 1 (.1) AT4G07400 43 / 0.0008 VFB3 VIER F-box proteine 3 (.1) AT3G26810 43 / 0.0009 AFB2 auxin signaling F-box 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G142600 [exp] 801 / 0 AT2G42620 854 / 0.0 PLEIOTROPIC PHOTOSIGNALING, ORESARA 9, MORE AXILLARY BRANCHES 2, RNI-like superfamily protein (.1) Potri.019G001971 [exp] 52 / 2e-06 AT5G36930 427 / 3e-130 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T009323 [exp] 52 / 2e-06 AT5G36930 449 / 2e-138 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.013G013100 [exp] 51 / 2e-06 AT5G27920 631 / 0.0 F-box family protein (.1) Potri.019G123400 [exp] 50 / 4e-06 AT5G01720 604 / 0.0 RNI-like superfamily protein (.1) Potri.006G081600 [exp] 50 / 6e-06 AT4G07400 286 / 3e-89 VIER F-box proteine 3 (.1) Potri.004G033900 [exp] 47 / 3e-05 AT1G12820 654 / 0.0 auxin signaling F-box 3 (.1) Potri.002G074700 [exp] 47 / 3e-05 AT1G21410 518 / 0.0 F-box/RNI-like superfamily protein (.1) Potri.006G254100 [exp] 47 / 4e-05 AT2G25490 795 / 0.0 EIN3-binding F box protein 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029834 [exp] 790 / 0 AT2G42620 843 / 0.0 PLEIOTROPIC PHOTOSIGNALING, ORESARA 9, MORE AXILLARY BRANCHES 2, RNI-like superfamily protein (.1) Lus10020707 [exp] 776 / 0 AT2G42620 845 / 0.0 PLEIOTROPIC PHOTOSIGNALING, ORESARA 9, MORE AXILLARY BRANCHES 2, RNI-like superfamily protein (.1) Lus10002715 [exp] 74 / 1e-15 AT2G42620 85 / 2e-20 PLEIOTROPIC PHOTOSIGNALING, ORESARA 9, MORE AXILLARY BRANCHES 2, RNI-like superfamily protein (.1) Lus10040230 [exp] 71 / 2e-14 AT2G42620 84 / 4e-20 PLEIOTROPIC PHOTOSIGNALING, ORESARA 9, MORE AXILLARY BRANCHES 2, RNI-like superfamily protein (.1) Lus10012764 [exp] 73 / 5e-13 AT4G15475 813 / 0.0 F-box/RNI-like superfamily protein (.1) Lus10002913 [exp] 56 / 1e-07 AT2G25490 760 / 0.0 EIN3-binding F box protein 1 (.1) Lus10035161 [exp] 52 / 1e-06 AT3G26810 770 / 0.0 auxin signaling F-box 2 (.1) Lus10002165 [exp] 52 / 2e-06 AT2G25490 684 / 0.0 EIN3-binding F box protein 1 (.1) Lus10030102 [exp] 51 / 2e-06 AT2G25490 683 / 0.0 EIN3-binding F box protein 1 (.1) Lus10002014 [exp] 51 / 3e-06 AT2G25490 766 / 0.0 EIN3-binding F box protein 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.011G066700.1 pacid=42782205 polypeptide=Potri.011G066700.1.p locus=Potri.011G066700 ID=Potri.011G066700.1.v4.1 annot-version=v4.1 ATGGCTAAAAAATTTAACACTAATGTTCATTTCCATGACATACCAGATGCAATCCTTTCCAGTATATTCTCCTTGATAACAGATACACGTAGCCGCAACG CCATGTCCCTTGTGTGCCTTAAATGGCACTTGATAGAGCGCTCTACACGCACTTGTCTCTCTCTTAGAGGCAATATCCGTGACCTCTTTCTTCTCCCAAC TTGCTTTAGAGCTGTCTCTAATCTTGATCTCTCATTGGTTTCCCCTTGGGGGCGTCCAATTCTTGATTCCTCACCAAACACTACCCTTCTTGCTCAAGTT CTCCATTGTACCTTTCCCTCTGTTGTAACTCTCACTGTTTATGCAAGAAATCCTTCAATTCTTCATCTTCTTGCTCCTCAATGGCCTAACTTACGCCAGA TTAAGCTTGTTCGCTGGCACAAGCGATCTCCAACTACTTTGGGCTCTGATTTTCTTGCATTGTTTGAGCATTGCCATTCACTTGCCTCACTTGATCTCTC GCATTTCTATTGCTGGACAGAAGATTTACCTCCAGCCCTTGAAGCATACCCTTCCATTGCTGCTTCTTTAAGCCATCTTAATATCCTTAATTACACTTCA TCTGATCAGGGATTCAAGTCCCATGAGATTCTTGCCATTACCTCTGCATGCCCAAATCTCCGTGAATTTTTAGCAGCCTGTATATTTGACCATAGATACA TTGGTTTTGTTGGAGATGAAACCTTGCTATCTCTTGCCACAAATTGTCCTCGCCTTTCTCTTCTTCACCTTGTCGATTCTAGTTCCTTGTCTGCTGCCAG GGGTGATCCAGATAATGATGGATACACGACCGAGGATGCTAGAATCAGACAAACTATGCTAATTGAAATGTTTTCTGCATTGCCATTGCTTGAAGAATTG GTTCTTGATGTTTGCCACAATGTTAGGGATACGTGGGTAGCACTGGAAATGCTTAATTCCAAGTGCCCAAGGCTCAAGTCTTTAAAGTTGGGACAGTTTC ACGGAATCTGTAAGGGAATAGATGCACGGCCCGATGGGATTGCACTTTGCAGCAGATTGGAATCATTGTCAATCAAGAACTGTGCTGACTTGACTGATTC TGGTTTGATTTCAATCTCCCTTGGCTGCCCAAGACTCACCAAGTTTGAGGTCCAGGGTTGTAAGAAGATCACGAAATTAGGGATGACAAAACTAGCTTCT ATTCTGAGGAAAACTTTAACTGAAGTGAAAATCTCTTGTTGCAAGCATCTCAATACCGTGACCTCGTTGCAGGCATTGGAACCGATCCGAGATTGTCTAC AACGATTGCACATAGATTGCGTGTGGGAAATGGTTGAACAATCAGGATCGGAGGCTACCAGTTCAGCTAAATATGATGGATTCAAATGTTCAGACAAGAG ACGTGGCATTTGGGAAGACGCAAACTTGAAGAAGAAATACAAGAAGTATAATGACAACGAGAATGGATACGCCTCTAGTAATTGGGCAAAACTGCAGTGT CTTTCACTTTGGATTCCAGTCGGCGAGTTGCTGAATCCATTGGTTTTGGCAGGATTGGATAACTGCCCTATGCTGGAGGAGATACAAATAAAAGTTGAAG GTGACTGTAGGCATCAGTCAAGACTTTCCCCAGATGGTTTCGGTCTCAGCTCCCTTCTATGCTACCCTCGGCTTTCGAAGATGCACATAGACTGTCAAGC TGCAATAGGATATGCTCTTACTGCCCCTTCTGGACATGTGGATTTGAGCCCGTGGGAGAGGTTTTATCTTAATGGGATTGGAAGACTGAACCTGACTGAG CTCAACTATTGGCCTCCACAGGACATTGATTATAATAAAAGGAGCCTATCTCTCCCAGCAGCGGGATTGCTTGCACAGTGTAGGACTATGAGGAAGCTAT TTGTTCATGGCACAGCTAATGAACATTTCATGATGTTTCTTTTGAAAGTACAAACTCTCAGAGATGTCCAGTTGAGGGAAGATTATTACCCTGCACCGGA GAATGACAATAGCACAGAGATGAGAATAGACTCTTGCTCTAGATTTGAGGATGCTCTCAACAGGCGTGCGATTCCTGATTGA
AA sequence Show only first row Show all	>Potri.011G066700.1 pacid=42782205 polypeptide=Potri.011G066700.1.p locus=Potri.011G066700 ID=Potri.011G066700.1.v4.1 annot-version=v4.1 MAKKFNTNVHFHDIPDAILSSIFSLITDTRSRNAMSLVCLKWHLIERSTRTCLSLRGNIRDLFLLPTCFRAVSNLDLSLVSPWGRPILDSSPNTTLLAQV LHCTFPSVVTLTVYARNPSILHLLAPQWPNLRQIKLVRWHKRSPTTLGSDFLALFEHCHSLASLDLSHFYCWTEDLPPALEAYPSIAASLSHLNILNYTS SDQGFKSHEILAITSACPNLREFLAACIFDHRYIGFVGDETLLSLATNCPRLSLLHLVDSSSLSAARGDPDNDGYTTEDARIRQTMLIEMFSALPLLEEL VLDVCHNVRDTWVALEMLNSKCPRLKSLKLGQFHGICKGIDARPDGIALCSRLESLSIKNCADLTDSGLISISLGCPRLTKFEVQGCKKITKLGMTKLAS ILRKTLTEVKISCCKHLNTVTSLQALEPIRDCLQRLHIDCVWEMVEQSGSEATSSAKYDGFKCSDKRRGIWEDANLKKKYKKYNDNENGYASSNWAKLQC LSLWIPVGELLNPLVLAGLDNCPMLEEIQIKVEGDCRHQSRLSPDGFGLSSLLCYPRLSKMHIDCQAAIGYALTAPSGHVDLSPWERFYLNGIGRLNLTE LNYWPPQDIDYNKRSLSLPAAGLLAQCRTMRKLFVHGTANEHFMMFLLKVQTLRDVQLREDYYPAPENDNSTEMRIDSCSRFEDALNRRAIPD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G42620		PPS, PP2, ORE9,...	PLEIOTROPIC PHOTOSIGNALING, OR...		Potri.011G066700 [exp]	0	1
AT5G61760		ATIPK2BETA	ARABIDOPSIS THALIANA INOSITOL ...		Potri.012G111400 [exp]	1.73	0.8354
AT4G10180		FUS2, DET1, ATD...	FUSCA 2, DE-ETIOLATED 1, light...		Potri.013G161700 [exp]	3.31	0.8536	Pt-DET1.1
AT5G14370			CCT motif family protein (.1)		Potri.001G339200 [exp]	5.29	0.8448
AT1G68750		ATPPC4	phosphoenolpyruvate carboxylas...		Potri.008G114200 [exp]	13.63	0.7259
AT1G11720		ATSS3	starch synthase 3 (.1.2)		Potri.004G014100 [exp]	14.14	0.7850
AT1G56190			Phosphoglycerate kinase family...		Potri.016G091800 [exp]	14.69	0.7692
AT1G35710			Protein kinase family protein ...		Potri.019G122500 [exp]	17.29	0.7601
AT1G18870		ATICS2, ICS2	ARABIDOPSIS ISOCHORISMATE SYNT...		Potri.012G070000 [exp]	18.43	0.8053
AT1G29260		PEX7, ATPEX7	ARABIDOPSIS PEROXIN 7, peroxin...		Potri.011G066600 [exp]	18.89	0.7338
AT2G47900	TUB	AtTLP3	tubby like protein 3 (.1.2.3)		Potri.008G195200 [exp]	20.00	0.7713

Compare expression of checked genes

Potri.011G066700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.