Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09850 366 / 8e-123 XBCP3 xylem bark cysteine peptidase 3 (.1) AT5G43060 357 / 5e-119 Granulin repeat cysteine protease family protein (.1) AT1G47128 355 / 3e-118 RD21A, RD21 RESPONSIVE TO DEHYDRATION 21A, responsive to dehydration 21, Granulin repeat cysteine protease family protein (.1) AT3G19390 340 / 2e-112 Granulin repeat cysteine protease family protein (.1) AT1G20850 308 / 2e-101 XCP2 xylem cysteine peptidase 2 (.1) AT4G35350 302 / 6e-99 XCP1 xylem cysteine peptidase 1 (.1.2) AT4G23520 298 / 3e-97 Cysteine proteinases superfamily protein (.1) AT4G36880 285 / 4e-92 CP1 cysteine proteinase1 (.1) AT3G48340 282 / 3e-91 CEP2 cysteine endopeptidase 2, Cysteine proteinases superfamily protein (.1) AT4G11310 278 / 2e-89 RD21A, RD21 Papain family cysteine protease (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G066800 [exp] 694 / 0 AT1G09850 359 / 7e-120 xylem bark cysteine peptidase 3 (.1) Potri.004G057700 [exp] 658 / 0 AT1G09850 362 / 4e-121 xylem bark cysteine peptidase 3 (.1) Potri.005G232900 [exp] 374 / 7e-126 AT1G09850 594 / 0.0 xylem bark cysteine peptidase 3 (.1) Potri.014G024100 [exp] 363 / 3e-121 AT5G43060 646 / 0.0 Granulin repeat cysteine protease family protein (.1) Potri.009G098100 [exp] 350 / 5e-116 AT1G47128 607 / 0.0 RESPONSIVE TO DEHYDRATION 21A, responsive to dehydration 21, Granulin repeat cysteine protease family protein (.1) Potri.001G302100 [exp] 345 / 4e-114 AT1G47128 598 / 0.0 RESPONSIVE TO DEHYDRATION 21A, responsive to dehydration 21, Granulin repeat cysteine protease family protein (.1) Potri.002G005700 [exp] 315 / 3e-104 AT1G20850 531 / 0.0 xylem cysteine peptidase 2 (.1) Potri.004G207600 [exp] 305 / 4e-100 AT4G35350 543 / 0.0 xylem cysteine peptidase 1 (.1.2) Potri.005G256000 [exp] 305 / 4e-100 AT1G20850 539 / 0.0 xylem cysteine peptidase 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024801 [exp] 359 / 2e-119 AT1G47128 633 / 0.0 RESPONSIVE TO DEHYDRATION 21A, responsive to dehydration 21, Granulin repeat cysteine protease family protein (.1) Lus10014087 [exp] 356 / 4e-118 AT5G43060 622 / 0.0 Granulin repeat cysteine protease family protein (.1) Lus10027877 [exp] 355 / 9e-118 AT5G43060 597 / 0.0 Granulin repeat cysteine protease family protein (.1) Lus10006130 [exp] 353 / 1e-117 AT1G09850 535 / 0.0 xylem bark cysteine peptidase 3 (.1) Lus10002827 [exp] 352 / 2e-116 AT1G47128 609 / 0.0 RESPONSIVE TO DEHYDRATION 21A, responsive to dehydration 21, Granulin repeat cysteine protease family protein (.1) Lus10019827 [exp] 306 / 3e-100 AT5G43060 501 / 1e-177 Granulin repeat cysteine protease family protein (.1) Lus10013204 [exp] 287 / 3e-93 AT1G20850 509 / 0.0 xylem cysteine peptidase 2 (.1) Lus10030722 [exp] 287 / 6e-93 AT4G35350 511 / 0.0 xylem cysteine peptidase 1 (.1.2) Lus10015286 [exp] 286 / 1e-92 AT5G45890 393 / 7e-137 senescence-associated gene 12 (.1) Lus10002199 [exp] 275 / 2e-88 AT5G45890 361 / 2e-124 senescence-associated gene 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [poplar] [flax] Peptidase_CA PF00112 [poplar] [flax] Peptidase_C1 Papain family cysteine protease CL0125 [poplar] [flax] PF00396 [poplar] [flax] Granulin Granulin CL0125 [poplar] [flax] PF08246 [poplar] [flax] Inhibitor_I29 Cathepsin propeptide inhibitor domain (I29)
Representative CDS sequence Show only first row Show all	>Potri.011G066900.5 pacid=42781629 polypeptide=Potri.011G066900.5.p locus=Potri.011G066900 ID=Potri.011G066900.5.v4.1 annot-version=v4.1 ATGGAATCCCAGAAACAACAACTGACCCTTTTCATATTTTTGCTCCTAGCTCCACTGGCATGCCTCTCTTCCGGCCTCCCTGGCGAGTACTCCACAGTGA GCAACGACCTTCACGAGGGTCTTACAGAGGAAGGCATCACTGAAGTCTTTAAACTATGGAAAGAGAAGCACCAGAAGGTGTACAAGCACGCAGAGGAGGC AGAAAGGAGGATCGGAAACTTTAAAAGGAACTTGAAATATATAATTGAGAAGAACGGGAAGAGAAAATCAGGTTTGGAGCATAAGGTGGGACTGAATAAG TTTGCTGATTTGAGCAATGAGGAGTTCAGGGAAATGTATTTGTCGAAGGTGAAAAAACCCATCACCATTGAAGAGAAGAGGAAGCACAGACACTTGCAAA CGTGCGATGCTCCTTCTAGCTTGGATTGGAGGAACAAGGGGGTTGTCACTGCTGTTAAGGACCAAGGCGACTGTGGAAGTTGTTGGTCATTCTCTACAAC TGGGGCCATAGAAGCAATAAACGCCATTGTCACTGGAGACCTAATTAGCCTTTCAGAACAGGAACTGGTGGATTGTGATACAACCAATAATTATGGGTGT GAAGGAGGCGACATGGACTCCGCGTTCCAATGGGTTATAGGCAATGGTGGGATTGATACAGAAGCTGATTATCCTTATACGGGTGTTGATGGCACCTGCA ACACAGCAAAGGAGGAAAAGAAAGTGGTATCCATTGAAGGGTATGTAGATGTAGATCCATCAGATAGTGCCCTCCTTTGTGCTACTGTGCAACAACCCAT CAGTGTTGGTATGGATGGTTCTGCGCTAGATTTCCAGCTATATACTGGTGGAATCTATGACGGTGACTGCTCTGGTGATCCGAACGACATTGATCATGCT ATTCTGATAGTCGGTTATGGTTCAGAAAATGATGAAGATTATTGGATAGTGAAGAATTCATGGGGCACGGAGTGGGGAATGGAAGGTTATTTTTATATAA GAAGAAACACTAGTAAACCTTATGGTGTTTGTGCAATCAACGCCGACGCCTCTTATCCGACAAAAGTGCCTTCGCCACCGTCACCACCTTCGCCGCCGCC GCCGCCATCGCCACCGCCACCACCACCATCGCCACCTCCTCCCTGCCCTCAACCAAGTGACTGTGGAGACTCCTCCTTCTGCCCGAGTGATGAGACATGT TGTTGCATTCTTAAGCTTTTCAGTTCCTGCATAATCTATGGTTGCTGCCCATATGAGAATGCTGTTTGCTGCGCTGAATCTACATACTGCTGCCCTAGTG ATTACCCGATTTGTGATGTCGATGATGGGCTCTGCCTCAGGGGCCAGGGAGATCACCTTGGAGTGGCTGCGCGCAGGCGACACATGGCTAACTACAAGTT TCCATGGACAAAGTTTGAGGAGATAAAGGAAACAAAGCAACCTGTTCTCCAATGGAAGAGGAGCCTTCGCTGCAATGCGCTGAATTACATGGAATAG
AA sequence Show only first row Show all	>Potri.011G066900.5 pacid=42781629 polypeptide=Potri.011G066900.5.p locus=Potri.011G066900 ID=Potri.011G066900.5.v4.1 annot-version=v4.1 MESQKQQLTLFIFLLLAPLACLSSGLPGEYSTVSNDLHEGLTEEGITEVFKLWKEKHQKVYKHAEEAERRIGNFKRNLKYIIEKNGKRKSGLEHKVGLNK FADLSNEEFREMYLSKVKKPITIEEKRKHRHLQTCDAPSSLDWRNKGVVTAVKDQGDCGSCWSFSTTGAIEAINAIVTGDLISLSEQELVDCDTTNNYGC EGGDMDSAFQWVIGNGGIDTEADYPYTGVDGTCNTAKEEKKVVSIEGYVDVDPSDSALLCATVQQPISVGMDGSALDFQLYTGGIYDGDCSGDPNDIDHA ILIVGYGSENDEDYWIVKNSWGTEWGMEGYFYIRRNTSKPYGVCAINADASYPTKVPSPPSPPSPPPPPSPPPPPPSPPPPCPQPSDCGDSSFCPSDETC CCILKLFSSCIIYGCCPYENAVCCAESTYCCPSDYPICDVDDGLCLRGQGDHLGVAARRRHMANYKFPWTKFEEIKETKQPVLQWKRSLRCNALNYME

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G09850		XBCP3	xylem bark cysteine peptidase ...		Potri.011G066900 [exp]	0	1
AT2G36830		TIP1;1, GAMMA-T...	TONOPLAST INTRINSIC PROTEIN 1;...		Potri.009G005400 [exp]	1.41	0.9688
AT4G39330		AtCAD1, ATCAD9	cinnamyl alcohol dehydrogenase...		Potri.002G018300 [exp]	2.23	0.9725	CADL2
AT3G14225		GLIP4, EMB1474	GDSL-motif lipase 4 (.1)		Potri.007G133500 [exp]	5.09	0.9230
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Potri.003G066600 [exp]	5.74	0.9682
AT5G62200			Embryo-specific protein 3, (AT...		Potri.015G132900 [exp]	5.91	0.9660
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Potri.003G066800 [exp]	6.63	0.9667
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Potri.002G120700 [exp]	9.16	0.9638
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Potri.014G019700 [exp]	9.89	0.9518
AT5G16340			AMP-dependent synthetase and l...		Potri.004G000300 [exp]	10.67	0.9130
AT5G10610		CYP81K1	"cytochrome P450, family 81, s...		Potri.017G028100 [exp]	10.95	0.9350

Compare expression of checked genes

Potri.011G066900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.