Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18640 678 / 0 MRH1 morphogenesis of root hair 1, Leucine-rich repeat protein kinase family protein (.1) AT5G45840 667 / 0 Leucine-rich repeat protein kinase family protein (.1.2) AT2G40270 364 / 1e-118 Protein kinase family protein (.1.2) AT3G56050 352 / 2e-113 Protein kinase family protein (.1.2) AT5G58540 310 / 1e-99 Protein kinase superfamily protein (.1.2.3) AT5G07150 297 / 5e-92 Leucine-rich repeat protein kinase family protein (.1) AT1G63430 246 / 7e-72 Leucine-rich repeat protein kinase family protein (.1.2) AT5G41180 226 / 1e-64 leucine-rich repeat transmembrane protein kinase family protein (.1) AT4G03390 148 / 8e-37 SRF3 STRUBBELIG-receptor family 3 (.1) AT5G65700 147 / 1e-36 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G058100 [exp] 1156 / 0 AT4G18640 694 / 0.0 morphogenesis of root hair 1, Leucine-rich repeat protein kinase family protein (.1) Potri.009G075400 [exp] 435 / 4e-143 AT2G40270 449 / 9e-152 Protein kinase family protein (.1.2) Potri.001G280200 [exp] 429 / 7e-141 AT2G40270 430 / 2e-144 Protein kinase family protein (.1.2) Potri.008G072100 [exp] 414 / 5e-136 AT2G40270 451 / 2e-153 Protein kinase family protein (.1.2) Potri.010G185300 [exp] 405 / 3e-132 AT2G40270 434 / 1e-146 Protein kinase family protein (.1.2) Potri.001G106600 [exp] 247 / 4e-72 AT1G63430 839 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.003G124800 [exp] 240 / 3e-69 AT1G63430 858 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.006G173800 [exp] 142 / 7e-37 AT1G52540 344 / 4e-117 Protein kinase superfamily protein (.1) Potri.017G016600 [exp] 145 / 1e-35 AT1G28440 1130 / 0.0 HAESA-like 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007281 [exp] 650 / 0 AT5G45840 568 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10025400 [exp] 530 / 2e-180 AT5G45840 608 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10015277 [exp] 470 / 2e-157 AT5G45840 548 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10029228 [exp] 461 / 6e-157 AT5G45840 444 / 5e-151 Leucine-rich repeat protein kinase family protein (.1.2) Lus10031290 [exp] 419 / 1e-137 AT4G18640 457 / 7e-153 morphogenesis of root hair 1, Leucine-rich repeat protein kinase family protein (.1) Lus10031860 [exp] 412 / 4e-135 AT5G45840 491 / 4e-166 Leucine-rich repeat protein kinase family protein (.1.2) Lus10017439 [exp] 387 / 5e-125 AT5G45840 457 / 1e-152 Leucine-rich repeat protein kinase family protein (.1.2) Lus10007516 [exp] 387 / 9e-125 AT5G45840 463 / 4e-155 Leucine-rich repeat protein kinase family protein (.1.2) Lus10008486 [exp] 245 / 3e-71 AT1G63430 878 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10008018 [exp] 241 / 8e-70 AT1G63430 846 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.011G067400.3 pacid=42780976 polypeptide=Potri.011G067400.3.p locus=Potri.011G067400 ID=Potri.011G067400.3.v4.1 annot-version=v4.1 ATGAGGGGCAGATGGAACTCAATTGGATTCCGAATTTTGTTCCTCTTGGTTTTGACTCTTAGTCTTGAAAATCAATGCTCCTGGTCGCTTAATGATGAGG GATCGGTTTTGTTGAAATTCCGGGCAAGAGTGGATTTCGATCCTTTTGGTGCCCTTGCAAATTGGAATCCCAACGATATTGATCCTTGCTCATGGTCTGG TGTTCATTGCGTCGCGGGAAAGGTGCAAATACTGGATCTGAGCGGACTTTCTTTGCAAGGGACATTGGCGCCAGAGCTTGGCAAACTTGTTAACTTAAGA TCTCTTGTACTCTACCGAAACCATTTCACTGGTACCATTCCTAAAGAGATTGGAGAGCTCAGAAAGCTAGAGCTACTGGACCTAAGGAACAATAACTTCA GTGGAGCAATTCCAGAAGAAATAGGAAGATTACTATCATTAAAATACTTGTTGCTTAGAGACAATAAATTTGGGGGAAGCATTCCTCCGGAGATCAGGAG GCTTAACCTGCTTTATGAATTGCAATTTGATGGAAATCTTGCATCTGGTTCTACTACTGGAGTTAGCTGTGTCAATAGAAAACTTGGACATGGCACGTGG TGGAGCAGCTTCAACCAATTGAATGGAGCGAATTCATTCATATTCCCAATAAAAGGAGCCTTTATGCATTACTTGAATTCCTTCATGCTGCAACCGTTCA AGCTTGGGAAGGATGCTCTGCATGGTTTTGGAGAAAATTGCTTCAATGAACCAGATAGATCATCAGAGCAAGGCACAGTTCAAAATGTAGAGATTGTTGT CAATTTTGAACGTCGCAGACTACTTGAACAGTCCAGTAACCTCCAAGCTGCACCTGCTAGTGGTGGGTCTTCCTCTCAACCAATTATTGCTCTTCCAACC ACGCGAAGTAGTGGGTCTTTCCCTGCAATACCAAATGCAAAGAAGCATCAAGCTCAATCTCCTGTGTCATTGGATTCACCTGTCAGTCCTCCGCCCAGAG GGACTGAGCATTCAAGTCATTCTTCTGAAAAACCATCTATAGATCAAACTCCAACGAATGGAACTTCTGGAAATACATGGATGTATTTCCTAATAATTCC AATTGCAGGGGTCTTGGGCATTGTTGCAGTAGGCTTGCTGTTAATGTGCAGGAAACAAGTAGTGACGACCATAGGTCCATGGAAGACTGGTCTAAGTGGA CAGTTGCAGAAAGCATTTGTTACAGGGGTTCCCAAGCTAAATCGATCAGAGCTGGAAACTGCCTGTGAGGATTTCAGCAATATCATTGATACTTTTAATG GTTTCACTGCGTACAAGGGAACACTGTCTAGTGGAGTTGAGATTTCTGTTGCATCAACTGCAGTGACTTCTTCCAAAGACTGGTCAAAGAGTGCAGAGAT GGCATACCGTAAAAAGATTGAAACACTATCACGAATTAATCATAAGAACTTTGTAAACCTTATTGGCTACTGTGAGGAGGATGAACCGTTCAATAGGATG ATGGTTTTTGAATATGCTCCAAATGGATCTCTCTTTGAGCATCTGCATGTTGAAGAAATGGAACATCTTGACTGGAATACAAGGTTGAGGATTATTATGG GAGTTGCTTATTGCCTGCAATATATGCACCATGATCTGAATCCACCTATAGTGCATTCTAAACTTTGTTCACGCGCTATCTTCTTAACAGATGACTATGC CGCTAAGATTGCAGAGATCTGTTTCTTGCCTCAAGCTACATCAAACTCAAAAATTTCTGGGGAAATGGAGGATTCACTGCCGCCCCATGTTGATTTAGAA ACAAACGTCTACTGTTTTGGGGTTTTGTTGCTTGAAGTCATTTCCGGGAAGCTCTCATACTCGGAAGAACAAGGGCACCTTGAAAATTGGGCTGCTGAAT ATTTGAATGACAAGCGGAGCATCGGCTACATGATTGATCCAAGCCTTAAGTCTTTCAAAAACAATGAGCTTGATGTCATCTGTGAGGTTATTCAACAATG TATCCAATCAGATCCAAGGCACAGACCAACAATGAAGGAGATCACCTCCAAATTGAAGGAAGTGATTTCTATCTCGCCTGATCAAGCAACCCCAAGACTT TCTCCCCTTTGGTGGGCTGAGCTTGAGATATTATCTGTGGAGGCAACTTAA
AA sequence Show only first row Show all	>Potri.011G067400.3 pacid=42780976 polypeptide=Potri.011G067400.3.p locus=Potri.011G067400 ID=Potri.011G067400.3.v4.1 annot-version=v4.1 MRGRWNSIGFRILFLLVLTLSLENQCSWSLNDEGSVLLKFRARVDFDPFGALANWNPNDIDPCSWSGVHCVAGKVQILDLSGLSLQGTLAPELGKLVNLR SLVLYRNHFTGTIPKEIGELRKLELLDLRNNNFSGAIPEEIGRLLSLKYLLLRDNKFGGSIPPEIRRLNLLYELQFDGNLASGSTTGVSCVNRKLGHGTW WSSFNQLNGANSFIFPIKGAFMHYLNSFMLQPFKLGKDALHGFGENCFNEPDRSSEQGTVQNVEIVVNFERRRLLEQSSNLQAAPASGGSSSQPIIALPT TRSSGSFPAIPNAKKHQAQSPVSLDSPVSPPPRGTEHSSHSSEKPSIDQTPTNGTSGNTWMYFLIIPIAGVLGIVAVGLLLMCRKQVVTTIGPWKTGLSG QLQKAFVTGVPKLNRSELETACEDFSNIIDTFNGFTAYKGTLSSGVEISVASTAVTSSKDWSKSAEMAYRKKIETLSRINHKNFVNLIGYCEEDEPFNRM MVFEYAPNGSLFEHLHVEEMEHLDWNTRLRIIMGVAYCLQYMHHDLNPPIVHSKLCSRAIFLTDDYAAKIAEICFLPQATSNSKISGEMEDSLPPHVDLE TNVYCFGVLLLEVISGKLSYSEEQGHLENWAAEYLNDKRSIGYMIDPSLKSFKNNELDVICEVIQQCIQSDPRHRPTMKEITSKLKEVISISPDQATPRL SPLWWAELEILSVEAT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G18640		MRH1	morphogenesis of root hair 1, ...		Potri.011G067400 [exp]	0	1
AT5G54690		IRX8, GAUT12, L...	IRREGULAR XYLEM 8, galacturono...		Potri.011G132600 [exp]	1.41	0.9644
AT2G46710			Rho GTPase activating protein ...		Potri.002G176800 [exp]	2.00	0.9590
AT3G54120			Reticulon family protein (.1)		Potri.016G110200 [exp]	3.87	0.9493
AT5G16730			Plant protein of unknown funct...		Potri.019G047600 [exp]	4.89	0.9289
AT2G27060			Leucine-rich repeat protein ki...		Potri.004G197500 [exp]	5.19	0.9296
AT2G46710			Rho GTPase activating protein ...		Potri.014G103600 [exp]	7.21	0.9040
AT5G03040		IQD2	IQ-domain 2 (.1.2.3)		Potri.016G086300 [exp]	7.34	0.9222
AT2G04780		FLA7	FASCICLIN-like arabinoogalacta...		Potri.002G223300 [exp]	8.24	0.9252	2,Pt-FLA7.2
AT3G60580	C2H2ZnF		C2H2-like zinc finger protein ...		Potri.001G157700 [exp]	10.00	0.9294
AT2G28315			Nucleotide/sugar transporter f...		Potri.004G211900 [exp]	10.19	0.9411

Compare expression of checked genes

Potri.011G067400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.