Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-CIPK20.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45820 647 / 0 PKS18, CIPK20, SnRK3.6 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) AT5G58380 545 / 0 PKS2, CIPK10, SnRK3.8, SIP1 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) AT4G18700 530 / 0 ATWL4, CIPK12, SnRK3.9 SNF1-RELATED PROTEIN KINASE 3.9, WPL4-LIKE 4, CBL-interacting protein kinase 12 (.1) AT5G45810 522 / 0 CIPK19, SnRK3.5 SNF1-RELATED PROTEIN KINASE 3.5, CBL-interacting protein kinase 19 (.1) AT5G01810 514 / 0 ATPK10, SnRK3.1, SIP2, PKS3, CIPK15 SNF1-RELATED PROTEIN KINASE 3.1, SOS3-INTERACTING PROTEIN 2, PROTEIN KINASE 10, CBL-interacting protein kinase 15 (.1.2.3) AT5G07070 510 / 8e-180 CIPK2, SnRK3.2 SNF1-RELATED PROTEIN KINASE 3.2, CBL-interacting protein kinase 2 (.1) AT4G30960 499 / 1e-175 CIPK6, SIP3, SnRK3.14, ATCIPK6 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) AT1G29230 499 / 1e-174 ATCIPK18, ATWL1, CIPK18, SnRK3.20 SNF1-RELATED PROTEIN KINASE 3.20, WPL4-LIKE 1, CBL-interacting protein kinase 18 (.1) AT1G30270 493 / 1e-172 PKS17, ATCIPK23, SnRK3.23, LKS1, CIPK23 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) AT5G25110 484 / 4e-169 CIPK25, SnRK3.25 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G133500 [exp] 592 / 0 AT5G58380 593 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.019G048800 [exp] 578 / 0 AT5G58380 539 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.019G127500 [exp] 571 / 0 AT5G58380 641 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.013G156000 [exp] 558 / 0 AT5G58380 623 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.006G186200 [exp] 541 / 0 AT4G30960 649 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Potri.018G108500 [exp] 525 / 0 AT4G30960 639 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Potri.006G062800 [exp] 509 / 4e-179 AT1G30270 753 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Potri.011G067600 [exp] 506 / 8e-177 AT4G18700 720 / 0.0 SNF1-RELATED PROTEIN KINASE 3.9, WPL4-LIKE 4, CBL-interacting protein kinase 12 (.1) Potri.004G058300 [exp] 504 / 2e-176 AT4G18700 735 / 0.0 SNF1-RELATED PROTEIN KINASE 3.9, WPL4-LIKE 4, CBL-interacting protein kinase 12 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007283 [exp] 605 / 0 AT5G45820 578 / 0.0 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) Lus10022749 [exp] 573 / 0 AT5G58380 598 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10014163 [exp] 567 / 0 AT5G58380 592 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10042229 [exp] 565 / 0 AT5G58380 676 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10021852 [exp] 524 / 0 AT4G30960 658 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Lus10036280 [exp] 520 / 0 AT4G30960 662 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Lus10028115 [exp] 513 / 0 AT1G30270 793 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Lus10042816 [exp] 511 / 5e-180 AT1G30270 794 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Lus10015275 [exp] 511 / 3e-179 AT4G18700 736 / 0.0 SNF1-RELATED PROTEIN KINASE 3.9, WPL4-LIKE 4, CBL-interacting protein kinase 12 (.1) Lus10024448 [exp] 501 / 6e-176 AT5G25110 654 / 0.0 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0573 [poplar] [flax] KA1-like PF03822 [poplar] [flax] NAF NAF domain CL0016 [poplar] [flax] PKinase PF14531 [poplar] [flax] Kinase-like Kinase-like
Representative CDS sequence Show only first row Show all	>Potri.011G067500.1 pacid=42780346 polypeptide=Potri.011G067500.1.p locus=Potri.011G067500 ID=Potri.011G067500.1.v4.1 annot-version=v4.1 ATGGAGAAGATGGGTCCTATATTGATGAATAGATATGAGTTAGGGAGATTGCTCGGACAAGGGACTTTCGCCAAGGTTTACCATGCAAGAAATCTCCAAT CTGGCCAAAGCGTTGCCATCAAGATTATTGACAAAGGAAAGGTATTAAGGAGTGGTTTGATAGATCAAATCAAGAGAGAAATCTCGGTCATGCGTCTTGT TAGGCACCCCAATATTGTTCAACTCAATGAGGTCATGGCAAGCAGGACCAAGATTTATTTCGTCATCGAGTTTGTGAAAGGAGGAGAGCTATTCAACTTG GTTTCCAAAGGGAAACTCAAGGAAGACGTTGCTCGCAAATATTTCCAACAGTTGATTGGTGCGGTTGATTTTTGTCATAGCCGAGGGGTCTACCATCGGG ATCTCAAGCCTGAAAATCTTCTCCTTGATGAAAATGGTGACCTAAAGATTACGGATTTCGGATTGAGTGCGTTATCGGAGTCGAGGAGGCAAGATGGTCT TCTCCACACAACCTGTGGAACTCCTGCATATGTTGCTCCAGAAGTCATTAACAAGAAAGGTTATGATGGACCCAAGGCTGATATATGGTCCTGTGGAGTT ATTCTCTTCGTGCTTTTGGCGGGTTTTCTTCCTTTCCATGACCAAAATCTCATGGAATTGTATAGGAAGATTACCAAAGGAGAATTCAGGTGTCCCAATT GGTTCCATCCCGAGGCTAAAAAGCTTCTTTCGAGGATTCTTGATCCCCATCCAAGCTCAAGAACGAGCATAGAAAAGATAACGAAAAATTGTTGGTTTAG GAAGGGATATAAGCAGATTGAAACCCCACCATCCCCCCAAGGTCACGCCAGAAGCAACTTGATTAAGGATGTGCATTCTGCCTTCGATTCAGCATCGGAT AACGAAAGCAATTCAAGGGAAAATGTCATGGTGGCTCCAAGAAGTCCTCTAAGACCAACTTGCTACAATGCCTTTGACATCATATCTCTCTCAAAAGGAT TTGATTTATCTGGCCTCTTTGAGAAGGATAAGAATCGAACACAGGAAGCGAGATTTACTACAACAAAATCGGCCTCGATGATCATGTCGAAATTCGAACA AATAGCAATGGCAGAGAGTTTCAGTTTTAAGAAGAAAGATGGAACACTAATGTTGGAGGGCAGCAGGGAAGGAAGAAAAGGGTTGCTTGCTATAGATGCA GAAATCTGTGAGGTTACGCCATCATTTTATGTTGTAGAGATGAAGAAAAAATCAGGGGATTCATTTGAATACAAGGAGTTTTGTGATCACGAATTAAAGC CTTCTCTCAAGGATATAGTTTGGGCATGGCAGGGAAGTGAGCAACCGCAAGTGTAG
AA sequence Show only first row Show all	>Potri.011G067500.1 pacid=42780346 polypeptide=Potri.011G067500.1.p locus=Potri.011G067500 ID=Potri.011G067500.1.v4.1 annot-version=v4.1 MEKMGPILMNRYELGRLLGQGTFAKVYHARNLQSGQSVAIKIIDKGKVLRSGLIDQIKREISVMRLVRHPNIVQLNEVMASRTKIYFVIEFVKGGELFNL VSKGKLKEDVARKYFQQLIGAVDFCHSRGVYHRDLKPENLLLDENGDLKITDFGLSALSESRRQDGLLHTTCGTPAYVAPEVINKKGYDGPKADIWSCGV ILFVLLAGFLPFHDQNLMELYRKITKGEFRCPNWFHPEAKKLLSRILDPHPSSRTSIEKITKNCWFRKGYKQIETPPSPQGHARSNLIKDVHSAFDSASD NESNSRENVMVAPRSPLRPTCYNAFDIISLSKGFDLSGLFEKDKNRTQEARFTTTKSASMIMSKFEQIAMAESFSFKKKDGTLMLEGSREGRKGLLAIDA EICEVTPSFYVVEMKKKSGDSFEYKEFCDHELKPSLKDIVWAWQGSEQPQV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G45820		PKS18, CIPK20, ...	SNF1-RELATED PROTEIN KINASE 3....		Potri.011G067500 [exp]	0	1	Pt-CIPK20.1
AT2G20340			Pyridoxal phosphate (PLP)-depe...		Potri.013G052900 [exp]	4.69	0.9914
AT1G75250	MYB	RSM3, ATRL6	RADIALIS-LIKE SANT/MYB 3, RAD-...		Potri.004G155866 [exp]	6.00	0.9810
AT2G20340			Pyridoxal phosphate (PLP)-depe...		Potri.013G052800 [exp]	6.00	0.9908
AT1G55260			Bifunctional inhibitor/lipid-t...		Potri.003G217000 [exp]	6.48	0.9677
AT2G41940	C2H2ZnF	ZFP8	zinc finger protein 8 (.1)		Potri.016G060600 [exp]	8.36	0.9829
AT2G06520		PSBX	photosystem II subunit X (.1)		Potri.006G144000 [exp]	8.48	0.9810
ATCG01010		ATCG01010.1, ND...	NADH-Ubiquinone oxidoreductase...		Potri.011G084150 [exp]	10.14	0.9580
AT3G02645			Plant protein of unknown funct...		Potri.003G205900 [exp]	10.24	0.9872
AT1G30760			FAD-binding Berberine family p...		Potri.011G158600 [exp]	10.95	0.9539
AT1G58684			Ribosomal protein S5 family pr...		Potri.001G256800 [exp]	12.64	0.9760

Compare expression of checked genes

Potri.011G067500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.