Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18700 721 / 0 ATWL4, CIPK12, SnRK3.9 SNF1-RELATED PROTEIN KINASE 3.9, WPL4-LIKE 4, CBL-interacting protein kinase 12 (.1) AT5G45810 672 / 0 CIPK19, SnRK3.5 SNF1-RELATED PROTEIN KINASE 3.5, CBL-interacting protein kinase 19 (.1) AT1G29230 635 / 0 ATCIPK18, ATWL1, CIPK18, SnRK3.20 SNF1-RELATED PROTEIN KINASE 3.20, WPL4-LIKE 1, CBL-interacting protein kinase 18 (.1) AT2G34180 603 / 0 ATWL2, CIPK13, SnRK3.7 SNF1-RELATED PROTEIN KINASE 3.7, WPL4-LIKE 2, CBL-interacting protein kinase 13 (.1) AT5G45820 477 / 1e-165 PKS18, CIPK20, SnRK3.6 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) AT5G58380 464 / 1e-159 PKS2, CIPK10, SnRK3.8, SIP1 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) AT4G30960 455 / 6e-157 CIPK6, SIP3, SnRK3.14, ATCIPK6 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) AT1G30270 452 / 5e-155 PKS17, ATCIPK23, SnRK3.23, LKS1, CIPK23 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) AT5G01810 441 / 1e-151 ATPK10, SnRK3.1, SIP2, PKS3, CIPK15 SNF1-RELATED PROTEIN KINASE 3.1, SOS3-INTERACTING PROTEIN 2, PROTEIN KINASE 10, CBL-interacting protein kinase 15 (.1.2.3) AT5G25110 442 / 5e-151 CIPK25, SnRK3.25 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G058300 [exp] 860 / 0 AT4G18700 735 / 0.0 SNF1-RELATED PROTEIN KINASE 3.9, WPL4-LIKE 4, CBL-interacting protein kinase 12 (.1) Potri.006G186200 [exp] 501 / 8e-175 AT4G30960 649 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Potri.016G133500 [exp] 493 / 3e-171 AT5G58380 593 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.011G067500 [exp] 492 / 3e-171 AT5G45820 647 / 0.0 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) Potri.013G156000 [exp] 491 / 1e-170 AT5G58380 623 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.018G108500 [exp] 487 / 3e-169 AT4G30960 639 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Potri.019G127500 [exp] 482 / 4e-167 AT5G58380 641 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.019G048800 [exp] 481 / 6e-167 AT5G58380 539 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.006G263500 [exp] 470 / 1e-162 AT5G25110 568 / 0.0 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015275 [exp] 704 / 0 AT4G18700 736 / 0.0 SNF1-RELATED PROTEIN KINASE 3.9, WPL4-LIKE 4, CBL-interacting protein kinase 12 (.1) Lus10007284 [exp] 643 / 0 AT4G18700 684 / 0.0 SNF1-RELATED PROTEIN KINASE 3.9, WPL4-LIKE 4, CBL-interacting protein kinase 12 (.1) Lus10036280 [exp] 486 / 6e-169 AT4G30960 662 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Lus10021852 [exp] 486 / 7e-169 AT4G30960 658 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Lus10022749 [exp] 480 / 2e-166 AT5G58380 598 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10029232 [exp] 468 / 1e-164 AT4G18700 466 / 3e-165 SNF1-RELATED PROTEIN KINASE 3.9, WPL4-LIKE 4, CBL-interacting protein kinase 12 (.1) Lus10025245 [exp] 468 / 4e-162 AT5G01820 504 / 1e-177 SNF1-RELATED PROTEIN KINASE 3.15, SOS2-like protein kinase 24, CBL-INTERACTING PROTEIN KINASE 14, serine/threonine protein kinase 1 (.1) Lus10042229 [exp] 468 / 1e-161 AT5G58380 676 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10014163 [exp] 466 / 5e-161 AT5G58380 592 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10007283 [exp] 464 / 6e-160 AT5G45820 578 / 0.0 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0573 [poplar] [flax] KA1-like PF03822 [poplar] [flax] NAF NAF domain CL0016 [poplar] [flax] PKinase PF14531 [poplar] [flax] Kinase-like Kinase-like
Representative CDS sequence Show only first row Show all	>Potri.011G067600.2 pacid=42780558 polypeptide=Potri.011G067600.2.p locus=Potri.011G067600 ID=Potri.011G067600.2.v4.1 annot-version=v4.1 ATGGCAACCAGCAAAACCCCAAACAACATTAGCAACCAAAGCCAAAGTCCTCTGCTCGGTCGGTACGAGATCGGCAAACTTCTTGGACATGGTACTTTTG CTAAAGTATACCATGCTAGAAACGTTAAAACCAACGAAAGTGTTGCCATCAAAGTTATTGACAAAGAAAAGATCCTCAAGGTTGGTCTTATGGCTCATAT CAAACGTGAAATCTCCATTCTTCGCCGTGTTCGCCACCCCAATATTGTCCAGCTTTTTGAAGTCATGGCTACAAAGGCCAAGATTTACTTTGTCATGGAA TATGTTCGAGGCGGTGAATTGTTCAATAAAGTTGCCAAAGGTAGGTTAAAAGAAGAGGTTGCCAGGAGATATTTCCAGCAATTGATATCTGCTGTGTCTT TCTGTCATGCCAGAGGTGTGTTTCATCGCGATTTGAAGCCAGAGAATTTGTTGCTTGATGAGAATGGGAACTTGAAAGTTTCGGATTTCGGATTGAGTGC AGTGCCTGATCAGATTAGACAAGATGGTTTGTTCCATACTTTTTGTGGGACTCCTGCTTACGTTGCTCCTGAAGTTCTTGCGAAAAAAGGGTATGATGCT GCTAAGGTTGATATTTGGTCTTGTGGGATTGTTTTGTTTGTGTTAATGGCTGGTTATTTACCATTTCAAGATCAAAATATTATGGTTATGTATAAAAAGA TCTATAAGGGTGAGTTTAGATGTCCTAGATGGTTTTCTTCTGAACTAGTTAGGCTTCTTTCTAAACTTCTTGATACTAACCCCGTCACAAGAATTACAAT CCCCGAGATTATGGAGAATAGGTGGTTCAAAAAGGGGTTTAAACATATTAAATTTTATATTGAAGATGATAAAGTTTGTAGTGTTCAAGACGAGGATGAT GTGGGTTCATCTTCTGATCAATCATTATCTGAATCGGAATCGGAATTCGAAACTAGAAGAAGGGTTACCACTTTGCCTAGACCTGCAAGTTTGAATGCTT TTGATATTATATCGTTTTCGCCTGGGTTTGATTTATCTGGGTTGTTTGAGGAGGGTGGGGAGGGAGCAAGGTTTGTTTCTGGGGCTCCTGTGACGAAGAT TATATCTAAATTGGAGGAGATTGCTAAAGTTGTAAGCTTTACAGTTAGGAAAAAGGATTGTAGAGTGAGTTTGGAAGGGTCTAGAGAAGGTGTGAAAGGC CCATTAACAATTGCAGCTGAGATATTTGAGTTGACACCGAAATTGGTTGTGGTGGAGGTTAAGAAGAAGGGAGGGGATAAAGGAGAGTACGAGGAGTTTT GTAACAGGGAATTGAAACCTGGATTGCAGAAGTTGATGCAGGAGGAATCTGAGGCAGCACCTGCTGCTTCTGTGGCTACTTCTGCTCTTGCGCCATCGGA ATCCCCACTATTCACCATCGATCCTTTTCCTACTGATTCTTCACAATCACCTATGGATCCTTTTCCTACCAATTCTACACAATTACCTATGGATCCTTTT CCTACCGATACTTCACATTTACCTTTCGACCCCTTTCCTACCAATTCTTCACAATTACCTATTGATCCTTTTCCTACCGCTTCTTCACATTTTCCTATAG ATCCCTTTCCTATCGATGTTTCAAATATACCATCGGATTCTGAATATTAG
AA sequence Show only first row Show all	>Potri.011G067600.2 pacid=42780558 polypeptide=Potri.011G067600.2.p locus=Potri.011G067600 ID=Potri.011G067600.2.v4.1 annot-version=v4.1 MATSKTPNNISNQSQSPLLGRYEIGKLLGHGTFAKVYHARNVKTNESVAIKVIDKEKILKVGLMAHIKREISILRRVRHPNIVQLFEVMATKAKIYFVME YVRGGELFNKVAKGRLKEEVARRYFQQLISAVSFCHARGVFHRDLKPENLLLDENGNLKVSDFGLSAVPDQIRQDGLFHTFCGTPAYVAPEVLAKKGYDA AKVDIWSCGIVLFVLMAGYLPFQDQNIMVMYKKIYKGEFRCPRWFSSELVRLLSKLLDTNPVTRITIPEIMENRWFKKGFKHIKFYIEDDKVCSVQDEDD VGSSSDQSLSESESEFETRRRVTTLPRPASLNAFDIISFSPGFDLSGLFEEGGEGARFVSGAPVTKIISKLEEIAKVVSFTVRKKDCRVSLEGSREGVKG PLTIAAEIFELTPKLVVVEVKKKGGDKGEYEEFCNRELKPGLQKLMQEESEAAPAASVATSALAPSESPLFTIDPFPTDSSQSPMDPFPTNSTQLPMDPF PTDTSHLPFDPFPTNSSQLPIDPFPTASSHFPIDPFPIDVSNIPSDSEY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G18700		ATWL4, CIPK12, ...	SNF1-RELATED PROTEIN KINASE 3....		Potri.011G067600 [exp]	0	1
AT4G01840		KCO5, ATTPK5, A...	Ca2+ activated outward rectify...		Potri.014G113700 [exp]	1.00	0.7764
AT1G26830		CUL3A, ATCUL3A,...	cullin 3A, cullin 3 (.1)		Potri.008G148300 [exp]	2.00	0.7412	CUL3.1
AT5G23570		SGS3, ATSGS3	SUPPRESSOR OF GENE SILENCING 3...		Potri.003G021000 [exp]	5.74	0.7208
AT1G17530		ATTIM23-1	translocase of inner mitochond...		Potri.001G198100 [exp]	7.41	0.6921	ATTIM23.2
AT5G02500		AtHsp70-1, AT-H...	HEAT SHOCK PROTEIN 70-1, ARABI...		Potri.008G054600 [exp]	10.19	0.6732	HSP70.4
AT1G26830		CUL3A, ATCUL3A,...	cullin 3A, cullin 3 (.1)		Potri.010G093200 [exp]	11.66	0.6126	CUL3.2
AT2G28200	C2H2ZnF		C2H2-type zinc finger family p...		Potri.004G216900 [exp]	14.07	0.6260
AT4G19450			Major facilitator superfamily ...		Potri.001G128200 [exp]	15.49	0.6567
AT4G35510			unknown protein		Potri.007G063000 [exp]	17.49	0.6723
AT5G05710			Pleckstrin homology (PH) domai...		Potri.008G066700 [exp]	18.89	0.6269

Compare expression of checked genes

Potri.011G067600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.