Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45800 731 / 0 MEE62 maternal effect embryo arrest 62, Leucine-rich repeat protein kinase family protein (.1) AT2G24230 318 / 2e-97 Leucine-rich repeat protein kinase family protein (.1) AT5G58150 251 / 7e-73 Leucine-rich repeat protein kinase family protein (.1) AT5G07280 221 / 1e-60 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT1G55610 202 / 1e-54 BRL1 BRI1 like (.1.2) AT3G13380 185 / 7e-49 BRL3 BRI1-like 3 (.1) AT1G66830 176 / 1e-46 Leucine-rich repeat protein kinase family protein (.1) AT4G39400 175 / 2e-45 DWF2, CBB2, BIN1, BRI1, ATBRI1 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) AT1G62950 174 / 2e-45 leucine-rich repeat transmembrane protein kinase family protein (.1) AT5G63930 172 / 2e-44 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G058500 [exp] 1140 / 0 AT5G45800 709 / 0.0 maternal effect embryo arrest 62, Leucine-rich repeat protein kinase family protein (.1) Potri.006G185100 [exp] 337 / 2e-104 AT2G24230 1159 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.018G107400 [exp] 311 / 2e-94 AT2G24230 1153 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.015G141200 [exp] 203 / 1e-54 AT5G07280 1347 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.001G472900 [exp] 197 / 9e-53 AT1G55610 1485 / 0.0 BRI1 like (.1.2) Potri.011G169600 [exp] 194 / 6e-52 AT1G55610 1500 / 0.0 BRI1 like (.1.2) Potri.012G139000 [exp] 192 / 5e-51 AT5G07280 1377 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.008G140500 [exp] 180 / 4e-47 AT2G01950 1535 / 0.0 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) Potri.010G097700 [exp] 176 / 7e-46 AT2G02220 1187 / 0.0 phytosulfokin receptor 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007287 [exp] 786 / 0 AT5G45800 657 / 0.0 maternal effect embryo arrest 62, Leucine-rich repeat protein kinase family protein (.1) Lus10029235 [exp] 782 / 0 AT5G45800 668 / 0.0 maternal effect embryo arrest 62, Leucine-rich repeat protein kinase family protein (.1) Lus10036608 [exp] 353 / 2e-110 AT2G24230 1134 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10035826 [exp] 345 / 8e-108 AT2G24230 1081 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033533 [exp] 178 / 2e-46 AT4G39400 1492 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10006675 [exp] 172 / 7e-45 AT1G12460 984 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10016395 [exp] 171 / 3e-44 AT1G72300 1170 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10034446 [exp] 167 / 7e-44 AT5G58300 847 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10019722 [exp] 169 / 2e-43 AT1G72300 1189 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10020835 [exp] 167 / 5e-43 AT4G39400 1486 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0022 [poplar] [flax] LRR PF12799 [poplar] [flax] LRR_4 Leucine Rich repeats (2 copies) CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.011G067900.1 pacid=42782132 polypeptide=Potri.011G067900.1.p locus=Potri.011G067900 ID=Potri.011G067900.1.v4.1 annot-version=v4.1 ATGGAAGTGTTTTGCAGGTTTTTGCTTGTTGTTTCGCTGTTTGTGTTTGTAGAATCTACATGCAACAGTACAGACCAAGAACTGGTCTCAAAGGCTTTTG GCTCTGTCTCTGGCTTCAATCTTTCTTGGTTTCAACATGCTGGCTCGACTTCAAACTGTTCTCATCCTTCTGTAACAGAAATAAGGCTTCCTTCGAGAAA CTTGACTGGCAGCATTTCTTGGCATTATCTCAAGAACATGTCTCAACTGCACATAATCGATCTCTCCAGCAATTCTCTTCGAGGTCAGGTGCCAGCTTGG TTTTGGTCTATAAAGAGCTTGAGTGATGTCAATCTGTCCAAGAATAGGCTTGGAGGGAGCATTGGGTTTGGAATTAATAGTTCATCTTCGTCAATGATTA AAGTTCTCAATCTCTCAACCAACAGGTTCACCAACTTGGTTAAACTCTCTGGTTTTGCAAATTTAGAGGTTCTTGATATCTCTCATAATGATATAGGTTC TTTGCCTTCTGGGTTTCCTAACTTGACCAAGCTAGAGTCGCTTAACATTTCAAGCTGCAAAATTTTAGGCAACATAAGAGTCATTTCAGGTCTCCAATCA TTGAAGTATCTAGATGTCTCGAATAACAACATGAGTGGTAAATTCCCTTCTGATTTCCCTCCTCTAGATGGCCTCATGTTCCTGAATGTTTCACTAAACA ACTTCTCTGGACTCGTTGGCTTAGACAAGTACAGGAAATTTGGAAAATCTGCTTTTAGTCATGGTGGTAGTTTGATTTTCAATACCTCAAAAATCCCAAC TAATCCCATCAAGAAGCCACGTTTAAATCAAACCCAACTTCACAAGAAAACCATAAAAAAATACCCACCAATTTACTTACACGCCAAAAAGACCAAGCCC AAATCAAAAACCAAAACCCTGGTTATTTGTGTCTCAGCAACATCATCACTTGTTGTCGTTTCAATTGCCATTTGCGTCTTTTGCATGCACAGAAGACGAA AGATTGCAACGAGAAACAAATGGGCAATCTCTAAACCTGTCCACCTCACTTTCAAGATGGAAAAATCAGGGCCGTTCAGCTTTGAAACCGAGTCAGGTTC ATCATGGGTGGCAGACATTAAAGAGCCAACATCAGCACCAGTGATCATGCCATCTAAGCCATTGATGAATTTGACTTTTAAGGACTTGATTGTTTCCACC TCCCACTTTGGCACAGACTCTCTCCTAGCAGAGGGCAGGTGTGGACCCCTCTACAGAGCTGTCCTACCTGGAGATCTCCACGTGGCAATCAAGGTTTTGG AGAATGCAAGAGACCTTGATCATGATGATGCTGTGGCTCTTTTTGAAGATATTTCCAGACTTAAACACCCCAACCTCCTGCCGCTATGTGGGTACTGCAT TGCAGGTAAAGAGAAGCTCGTACTGTACGAGTTCATGTTCAACGGGGATCTCCACCGTTGGCTCCACGAGCTTCCCACACTCAAAACCAACGTAGAGGAC TGGAGCACTGACACGTGGGAGAATCAAAACGTCCATAGGTTCCACGTTGCTTCCCCCGAAGAAAAAACTAACTGGCTCACGCGCCACCAAATCGCCGTCG GAGTGGCTCGTGGAGTTGCCTATCTCCACCATGCGGGATCTACTCATGGCCAACTCGTCGCGTCCAACATCCTCCTCTCCGATTCTCTCGAACCTCGAGT TGCCGATTTTGGACTTAGAAATGTCGGCTCAAGTAACAAGAGTGTCGGTTTGGAAAAACAAGATTGTGGGTTTGAGCTTGACGTGTATTGTTTTGGTGTT GTGTTGATAGAGTTAATGACGGGTAAGCAAGGGAGTGAAGGGAATGTGGAGTGGGTTAGGCGGCTGGTGAGAGAGGGGCGTGGTGGTGATGCGCTTGACT CGAGACTGAGACTCGGTGGCGACTCAGTGAGCGAGATGGTCGAGTGTCTGCGAGTTGGATACCTTTGTACGGCTGAGCTGCCTGAGAAGAGACCCACCAT GCAGCAAGTCTTGGGTTTGCTCAAAGACATACATCCCGTGTTGAGTTGA
AA sequence Show only first row Show all	>Potri.011G067900.1 pacid=42782132 polypeptide=Potri.011G067900.1.p locus=Potri.011G067900 ID=Potri.011G067900.1.v4.1 annot-version=v4.1 MEVFCRFLLVVSLFVFVESTCNSTDQELVSKAFGSVSGFNLSWFQHAGSTSNCSHPSVTEIRLPSRNLTGSISWHYLKNMSQLHIIDLSSNSLRGQVPAW FWSIKSLSDVNLSKNRLGGSIGFGINSSSSSMIKVLNLSTNRFTNLVKLSGFANLEVLDISHNDIGSLPSGFPNLTKLESLNISSCKILGNIRVISGLQS LKYLDVSNNNMSGKFPSDFPPLDGLMFLNVSLNNFSGLVGLDKYRKFGKSAFSHGGSLIFNTSKIPTNPIKKPRLNQTQLHKKTIKKYPPIYLHAKKTKP KSKTKTLVICVSATSSLVVVSIAICVFCMHRRRKIATRNKWAISKPVHLTFKMEKSGPFSFETESGSSWVADIKEPTSAPVIMPSKPLMNLTFKDLIVST SHFGTDSLLAEGRCGPLYRAVLPGDLHVAIKVLENARDLDHDDAVALFEDISRLKHPNLLPLCGYCIAGKEKLVLYEFMFNGDLHRWLHELPTLKTNVED WSTDTWENQNVHRFHVASPEEKTNWLTRHQIAVGVARGVAYLHHAGSTHGQLVASNILLSDSLEPRVADFGLRNVGSSNKSVGLEKQDCGFELDVYCFGV VLIELMTGKQGSEGNVEWVRRLVREGRGGDALDSRLRLGGDSVSEMVECLRVGYLCTAELPEKRPTMQQVLGLLKDIHPVLS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G45800		MEE62	maternal effect embryo arrest ...		Potri.011G067900 [exp]	0	1
AT1G22430			GroES-like zinc-binding dehydr...		Potri.019G041600 [exp]	1.73	0.9539	HNL.5
AT1G68400			leucine-rich repeat transmembr...		Potri.010G121700 [exp]	5.09	0.9235
AT3G52820		ATPAP22, PAP22	purple acid phosphatase 22 (.1...		Potri.003G030700 [exp]	5.29	0.9217
AT1G28130		GH3.17	Auxin-responsive GH3 family pr...		Potri.001G069000 [exp]	5.91	0.9409	7
AT2G23755			unknown protein		Potri.007G032900 [exp]	6.48	0.9384
AT4G18910		ATNLM2, NIP1;2,...	NOD26-LIKE INTRINSIC PROTEIN 2...		Potri.017G083300 [exp]	8.83	0.9156
AT3G13790		ATCWINV1, ATBFR...	ARABIDOPSIS THALIANA CELL WALL...		Potri.006G227400 [exp]	11.13	0.9418	Pt-CWINV.1
AT4G03230			S-locus lectin protein kinase ...		Potri.013G150800 [exp]	11.22	0.9382
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Potri.018G070900 [exp]	11.61	0.9425
AT1G02520		MDR8, ABCB11, P...	multi-drug resistance 8, ATP-b...		Potri.014G113100 [exp]	14.14	0.9383

Compare expression of checked genes

Potri.011G067900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.