Plant FIBer expression Database

Potri.011G068100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G29220 263 / 1e-84 transcriptional regulator family protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G058700
[exp]
482 / 6e-170 AT1G29220 197 / 1e-59 transcriptional regulator family protein (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10007288
[exp]
267 / 4e-86 AT1G29220 217 / 2e-67 transcriptional regulator family protein (.1.2)
Lus10029236
[exp]
216 / 1e-67 AT1G29220 154 / 8e-45 transcriptional regulator family protein (.1.2)
Lus10029237
[exp]
110 / 1e-28 AT1G29220 117 / 4e-32 transcriptional regulator family protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF07818 HCNGP HCNGP-like protein
Representative CDS sequence
>Potri.011G068100.1 pacid=42781120 polypeptide=Potri.011G068100.1.p locus=Potri.011G068100 ID=Potri.011G068100.1.v4.1 annot-version=v4.1
ATGGCGTCAAGAAAGAAACATTTAGAAGGAATCGCATTACTCTCAATGTACAACGACGACGAAGAAGACGATGATGAAGAAATGGAAGATCTCGAACACC
AACCAAACCAATCTAACGACATGGAGCAAGATACTCTGCACGACGATAACGCCATGCTTACCGAAGAATTCCAGGATACAGAAGAAGCAGAAGCAGCTAC
CGCTAGTCGGAATTCAACTCCCGAAGGAAGTCTTTTAAGGCCTTTGACGCCGCTGCAGCAGCAGCTGCAACAAGGAGGGACTATTAATTTGGAGACGAAG
AGAAGTAGTAGTAGGAGAGGGAGACTTGCTATTGTTGATTATGGTCACGATGAAGTTGCCATGTCCCCTGAACCTGAGGAAGGGGAGTTCGAAGAGGAGC
TTCAAAGTGCCAATGGTGCTATCCAAGAAAAATCTTCTCCAGCAACTGCTCAGATTTTATCTCCTAGTGTTCGAGCAACTCCACAGTCATCTGAACATCT
AGAACCATCGCAACCTGGTGAAATAAATGATACCACTAAGGAATCAGAAGCTTTCAATGCTGAAGGTGCTAATGAGGTTCCTGCAGAGGGTGTTGATCTG
TTGGATAAATTTCTTTCCCCACCACCTAAAGAGAAGTGCCCAGAGGACCTGCAAAAAAAAATTGATAAATTTCTTGCTTTGAAAAAAATTGGGAGAAGCT
TCAATGCAGAAGTCCGCAATAGGAAGGATTATAGGAACCCGGACTTCTTACTGCATGCTGTGAGGTATCAAGATATTGATCAGATAGGGTCTTGCTTCAG
TAAAGATGTATTTGACCCTCATGGATACGACCAAAGCGACTACTATCTTGAGATAGAGGCTGATATGAGGCGTGAAAGGGAGAGGAAGGAGCAAGAGCTA
AAGAGAAGTCCAAAGGTTGAATTTGTTTCAGGGGGAACTCAGCCTGGAGTGGTTGTACCTCCAACAAAGTTCAGTTTGCCTATTCCAGTTGTCACTGCTA
GTGGGACACATTCATCTGCAAATGCAGCCGATGCAGCTCCCCGCGAGGGTAGACAGAACAAGAAGTCAAAATGGGATAAGGTGGATGGTGATGGAAGGAA
TCCTTTACCAGCTGGTGGACATGATTCTTTAGCTGCTGCAGCAGCTCTGTTATCCGCAGCTAATGTTGGTTCTGGATACACGGGTTTTGTGCAGCAGAAA
CGGCGAGAGGCAGAAGAAAAAAGATCTGGAGAAAGGAAGTTGGAAAGAAGATCTTGA
AA sequence
>Potri.011G068100.1 pacid=42781120 polypeptide=Potri.011G068100.1.p locus=Potri.011G068100 ID=Potri.011G068100.1.v4.1 annot-version=v4.1
MASRKKHLEGIALLSMYNDDEEDDDEEMEDLEHQPNQSNDMEQDTLHDDNAMLTEEFQDTEEAEAATASRNSTPEGSLLRPLTPLQQQLQQGGTINLETK
RSSSRRGRLAIVDYGHDEVAMSPEPEEGEFEEELQSANGAIQEKSSPATAQILSPSVRATPQSSEHLEPSQPGEINDTTKESEAFNAEGANEVPAEGVDL
LDKFLSPPPKEKCPEDLQKKIDKFLALKKIGRSFNAEVRNRKDYRNPDFLLHAVRYQDIDQIGSCFSKDVFDPHGYDQSDYYLEIEADMRRERERKEQEL
KRSPKVEFVSGGTQPGVVVPPTKFSLPIPVVTASGTHSSANAADAAPREGRQNKKSKWDKVDGDGRNPLPAGGHDSLAAAAALLSAANVGSGYTGFVQQK
RREAEEKRSGERKLERRS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G29220 transcriptional regulator fami... Potri.011G068100
[exp]
0 1
AT3G26090 ATRGS1, RGS1 REGULATOR OF G-PROTEIN SIGNALI... Potri.008G181500
[exp]
8.71 0.7264
AT3G12250 bZIP BZIP45, TGA6 TGACG motif-binding factor 6 (... Potri.001G029800
[exp]
19.49 0.7019
AT3G12670 EMB2742 embryo defective 2742, CTP syn... Potri.008G080100
[exp]
25.45 0.6921
AT5G64160 unknown protein Potri.003G023601
[exp]
34.87 0.6622
AT5G09390 CD2-binding protein-related (.... Potri.003G023700
[exp]
45.79 0.6920
AT3G19590 BUB3.1 BUB \(BUDDING UNINHIBITED BY B... Potri.001G295100
[exp]
47.74 0.6278
AT5G66320 GATA GATA5 GATA transcription factor 5 (.... Potri.004G161500
[exp]
54.11 0.6862
AT5G56900 C3HZnF CwfJ-like family protein / zin... Potri.006G152100
[exp]
62.48 0.6832
AT4G02350 SEC15B exocyst complex component sec1... Potri.002G203200
[exp]
89.77 0.6486
AT2G34730 myosin heavy chain-related (.1... Potri.011G164400
[exp]
95.09 0.6619

Potri.011G068100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.