Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46330 506 / 5e-160 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) AT5G20480 484 / 3e-153 EFR EF-TU receptor (.1) AT3G47090 475 / 5e-150 Leucine-rich repeat protein kinase family protein (.1) AT5G63930 474 / 1e-148 Leucine-rich repeat protein kinase family protein (.1) AT1G17230 472 / 1e-147 Leucine-rich receptor-like protein kinase family protein (.1) AT5G44700 466 / 5e-144 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1) AT3G47580 459 / 5e-144 Leucine-rich repeat protein kinase family protein (.1) AT3G47570 456 / 1e-142 Leucine-rich repeat protein kinase family protein (.1) AT4G20140 460 / 7e-142 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT5G07280 457 / 2e-141 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G029900 [exp] 791 / 0 AT3G47570 645 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.003G150000 [exp] 741 / 0 AT3G47570 506 / 4e-162 Leucine-rich repeat protein kinase family protein (.1) Potri.003G150100 [exp] 732 / 0 AT3G47570 503 / 4e-161 Leucine-rich repeat protein kinase family protein (.1) Potri.011G140901 [exp] 561 / 0 AT4G20140 291 / 3e-84 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.012G044500 [exp] 541 / 6e-175 AT3G47570 764 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.015G037400 [exp] 539 / 1e-173 AT3G47570 786 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.018G020000 [exp] 538 / 2e-173 AT3G47570 816 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G080000 [exp] 538 / 2e-173 AT3G47570 818 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G145200 [exp] 536 / 4e-173 AT3G47570 793 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011386 [exp] 615 / 0 AT3G47570 787 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10023323 [exp] 531 / 2e-169 AT5G46330 1055 / 0.0 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) Lus10011387 [exp] 526 / 5e-169 AT3G47570 782 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033330 [exp] 521 / 4e-167 AT3G47570 783 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030903 [exp] 521 / 9e-167 AT3G47570 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033329 [exp] 520 / 3e-166 AT3G47570 794 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10009394 [exp] 518 / 3e-166 AT3G47570 642 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10037310 [exp] 512 / 1e-163 AT3G47570 744 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030845 [exp] 511 / 2e-163 AT3G47570 796 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033363 [exp] 511 / 7e-163 AT3G47570 758 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.011G068500.2 pacid=42781231 polypeptide=Potri.011G068500.2.p locus=Potri.011G068500 ID=Potri.011G068500.2.v4.1 annot-version=v4.1 ATGAGTTGTGTGGTGGCATTTCTATTACTGATAAGTTGCTTAATTGTTTGTTTGGCAATTCCCCATACCAACACAACTGATGAATTAGCACTCATGTCCT TGAAAAAACACATCACATTTGATCCTGGTAACATCTTGGCAAATAATTGGTCCACCGCTACGTCTTTCTGCAGTTGGATTGGAGTCGCTTGCAGTGCTGG CCACCAAAGAGTCACAAGCTTAAATCTTTATAGCATGAGGCTTGAGGGCACCCTCCCTCCTCAGGTGGGAAATCTCTCATTTCTAGTCTCCATAAACCTG AGCAACAACAGCTTCCATGGTTACCTGCCCCGTGAGCTAACACACTTGCATCGCTTGAAAGACATGAATTTGGCATACAACAACTTTGCTGGAGACATTC CTTCCAGCTGGTTTGCAATGCTACCACAACTTCAACACTTGTTTCTCACCAATAACTCTCTCGCAGGTTCCATTCCATCATCTCTCTTTAACGTCACTGC ACTGGAGACACTGAACCTGGAAGGCAATTTCATTGAAGGAAATATTTCGGAGGAAATCAGGAATCTTTCTAACCTGAAGATTTTAGACCTGGGACACAAC CACTTTTCTGGTGTCATTTCTCCCATACTTTTCAACATGCCTTCTCTACGGTTAATTAATCTCCGAGCTAACAGTTTATCTGGCATTCTTCAAGTGGTTA TGATCATGAGTAACATCCCTTCCACCCTGGAAGTGCTTAATCTGGGTTACAACCAGTTACATGGAAGAATTCCATCTAATCTGCATAAATGCACAGAACT TCGTGTATTAGACCTTGAAAGCAACAGATTCACAGGAAGCATTCCAAAAGAAATCTGTACTCTTACAAAGCTCAAGGAGCTATATCTTGGTAAAAACAAC TTGACCGGTCAAATTCCTGGTGAGATTGCGCGTCTTGTTAGCCTGGAAAAGTTGGGCTTAGAAGTCAACGGATTAAATGGAAACATACCGCGGGAGATTG GCAATTGTACTTATCTCATGGAAATACACGTGGAAAATAACAATTTAACAGGTGTAATACCGAATGAAATGGGTAACTTGCATACACTACAAGAACTGGA CTTGGGCTTTAACAATATCACTGGCTCCATTCCATCTACTTTCTTCAACTTCTCAATATTGAGAAGAGTCAACATGGCTTACAACTACCTTTCAGGCCAT CTTCCATCAAACACAGGTCTCGGGCTTCCAAATCTTGAGGAGCTCTACCTAGAGAAAAATGAACTTAGTGGACCAATCCCAGATTCTATCGGCAATGCTT CAAAACTGATAGTCTTAGACTTGTCCTACAATTCATTCTCAGGCAGAATTCCTGATTTGCTTGGAAATTTAAGAAATCTGCAGAAACTCAATTTGGCAGA AAACATTTTGACCAGCAAGTCTTTACGTTCAGAATTAAGCTTTCTCTCGTCTTTGTCAAATTGCAGGAGTTTAGCTTATTTAAGGTTCAATGGAAATCCA TTGAGGGGTAGGCTTCCGGTTTCCATTGGGAATTTATCTGCTTCTCTTGAAGAATTGTATGCTTTTGATTGCAGAATTATAGGCAATATTCCCAGAGGAA TCGGCAACTTAAGCAATTTGATAGGCTTAATCCTACAACAGAATGAACTGACTGGAGCAATTCCGAGCGAAATTGGAAGACTAAAACATCTGCAAGATTT CTCTCTGGCAAGCAACAAATTGCAAGGACATATTCCCAATGAGATATGTCATTTGGAGAGATTGAGTTACTTGTATCTCTTAGAAAATGGGTTTTCTGGA TCACTGCCTGCATGCCTGAGTAACATTACATCTCTTAGAGAACTCTATTTAGGCTCCAATAGATTCACATCAATACCTACTACCTTTTGGAGCCTAAAGG ATTTGCTACAGATAAACTTGTCTTTCAATTCTCTAACTGGTACTCTCCCATTAGAGATTGGAAATTTGAAGGTTGTGACAGTTATCGATTTCTCAAGCAA TCAACTGTCAGGTGATATCCCAACCAGCATCGCAGACCTTCAAAATCTAGCTCACTTCTCCTTATCTGATAATAGAATGCAGGGTCCTATTCCTTCATCA TTTGGTGACTTGGTAAGTTTAGAATTCCTTGACCTATCAAGAAACAGTCTCTCTGGAGCTATCCCCAAGTCCTTGGAGAAACTTGTACATCTTAAAACTT TCAACGTGTCGTTCAATCGATTGCAAGGAGAAATTCTTGATGGGGGACCATTTGCAAACTTCTCCTTCCGATCATTTATGGACAATGAAGCCTTATGTGG TCCGATTAGAATGCAAGTCCCGCCATGCAAAAGCATCAGTACTCATCGACAATCTAAGAGGCCTCGTGAATTTGTAATAAGATACATTGTACCAGCAATT GCATTCATAATTCTGGTACTTGCCCTCGCAGTTATCATCTTCAGAAGAAGCCATAAAAGGAAACTGAGTACTCAAGAAGATCCGTTACCTCCTGCAACAT GGAGAAAAATTTCGTACCATGAGCTTTATAGAGCAACAGAAGGATTTAACGAAACCAACTTGCTAGGCACTGGGAGTTGTGGATCAGTATACAAAGGGAC TCTTTCAGATGGATTGTGCATTGCAGTAAAGGTTTTCCATTTGCAGCTTGAAGGGGAGCTCATGAGATTTGACTCTGAGTGTGAAGTGTTGCGCATGCTT CGCCATCGAAATCTTGTCAAAATCATTAGCAGCTGTTGTAATCTTGATTTTAAAGCCTTAATACTGGAGTTCATACCTCATGGGAGCCTTGAGAAATGGT TGTACTCTCACAACTATTATCTTGATATCTTACAGAGGCTGAATATTATGATAGATGTGGCATCAGCATTGGAATATCTTCATCATGGCTGTACTAGACC TGTAGTCCACTGTGACCTAAAGCCCAGTAATGTCCTGATAAATGAAGACATGGTTGCACACGTGAGTGATTTTGGAATTTCAAGACTTCTAGGAGAAGGG GATGCTGTGACACAAACATTGACTCTAGCCACTATTGGTTATATGGCACCAGAGTATGGATTGGAAGGGATTGTGTCTGTGAAAGGTGATGTTTACAGCT ATGGTATTTTCTTGATGGAAACTTTTACAAGAAAGAAGCCCACAGATGATATGTTTGGAGGAGAAATGAGCTTGAAGAATTGGGTCAAACAATCCTTACC CAAAGCAATCACTGAAGTTATTGATGCCAATTTGCTGATTGAGGAAGAACATTTTGTAGCTAAAAAGGATTGTATAACATCCATTTTGAATTTGGCCCTA GAATGCTCTGCAGATCTGCCAGGAGAGAGGATATGCATGCGAGATGTTCTTCCTGCTCTGGAGAAGATCAAGTTAAAGTACAAGAAAGATGTTGAGCGGT ACTATTCCAGCTATGTTTGA
AA sequence Show only first row Show all	>Potri.011G068500.2 pacid=42781231 polypeptide=Potri.011G068500.2.p locus=Potri.011G068500 ID=Potri.011G068500.2.v4.1 annot-version=v4.1 MSCVVAFLLLISCLIVCLAIPHTNTTDELALMSLKKHITFDPGNILANNWSTATSFCSWIGVACSAGHQRVTSLNLYSMRLEGTLPPQVGNLSFLVSINL SNNSFHGYLPRELTHLHRLKDMNLAYNNFAGDIPSSWFAMLPQLQHLFLTNNSLAGSIPSSLFNVTALETLNLEGNFIEGNISEEIRNLSNLKILDLGHN HFSGVISPILFNMPSLRLINLRANSLSGILQVVMIMSNIPSTLEVLNLGYNQLHGRIPSNLHKCTELRVLDLESNRFTGSIPKEICTLTKLKELYLGKNN LTGQIPGEIARLVSLEKLGLEVNGLNGNIPREIGNCTYLMEIHVENNNLTGVIPNEMGNLHTLQELDLGFNNITGSIPSTFFNFSILRRVNMAYNYLSGH LPSNTGLGLPNLEELYLEKNELSGPIPDSIGNASKLIVLDLSYNSFSGRIPDLLGNLRNLQKLNLAENILTSKSLRSELSFLSSLSNCRSLAYLRFNGNP LRGRLPVSIGNLSASLEELYAFDCRIIGNIPRGIGNLSNLIGLILQQNELTGAIPSEIGRLKHLQDFSLASNKLQGHIPNEICHLERLSYLYLLENGFSG SLPACLSNITSLRELYLGSNRFTSIPTTFWSLKDLLQINLSFNSLTGTLPLEIGNLKVVTVIDFSSNQLSGDIPTSIADLQNLAHFSLSDNRMQGPIPSS FGDLVSLEFLDLSRNSLSGAIPKSLEKLVHLKTFNVSFNRLQGEILDGGPFANFSFRSFMDNEALCGPIRMQVPPCKSISTHRQSKRPREFVIRYIVPAI AFIILVLALAVIIFRRSHKRKLSTQEDPLPPATWRKISYHELYRATEGFNETNLLGTGSCGSVYKGTLSDGLCIAVKVFHLQLEGELMRFDSECEVLRML RHRNLVKIISSCCNLDFKALILEFIPHGSLEKWLYSHNYYLDILQRLNIMIDVASALEYLHHGCTRPVVHCDLKPSNVLINEDMVAHVSDFGISRLLGEG DAVTQTLTLATIGYMAPEYGLEGIVSVKGDVYSYGIFLMETFTRKKPTDDMFGGEMSLKNWVKQSLPKAITEVIDANLLIEEEHFVAKKDCITSILNLAL ECSADLPGERICMRDVLPALEKIKLKYKKDVERYYSSYV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G46330		FLS2	FLAGELLIN-SENSITIVE 2, Leucine...		Potri.011G068500 [exp]	0	1
AT3G04530		ATPPCK2, PEPCK2...	phosphoenolpyruvate carboxylas...		Potri.013G046100 [exp]	1.00	0.9273	Pt-PPCK2.1
AT1G68585			unknown protein		Potri.010G126800 [exp]	5.29	0.9198
AT5G12250		TUB6	beta-6 tubulin (.1)		Potri.001G104600 [exp]	5.65	0.9146
AT1G48780			unknown protein		Potri.015G045700 [exp]	6.00	0.9183
AT2G20780		AtPLT4	Major facilitator superfamily ...		Potri.013G135200 [exp]	6.24	0.8915
AT4G21380		ARK3	receptor kinase 3 (.1)		Potri.011G035600 [exp]	9.74	0.8785
AT2G27060			Leucine-rich repeat protein ki...		Potri.004G197500 [exp]	9.79	0.9083
AT3G49800			BSD domain-containing protein ...		Potri.014G008400 [exp]	11.22	0.8580
					Potri.003G074051 [exp]	11.22	0.8895
AT3G54140		ATPTR1	ARABIDOPSIS THALIANA PEPTIDE T...		Potri.006G096800 [exp]	11.95	0.8988

Compare expression of checked genes

Potri.011G068500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.