Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	L16.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45775 318 / 8e-113 Ribosomal L5P family protein (.1.2) AT4G18730 318 / 8e-113 RPL16B ribosomal protein L16B (.1) AT3G58700 318 / 8e-113 Ribosomal L5P family protein (.1) AT2G42740 318 / 8e-113 RPL16A ribosomal protein large subunit 16A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G068900 [exp] 327 / 2e-116 AT5G45775 320 / 1e-113 Ribosomal L5P family protein (.1.2) Potri.006G181600 [exp] 327 / 2e-116 AT5G45775 320 / 1e-113 Ribosomal L5P family protein (.1.2) Potri.006G181501 [exp] 327 / 2e-116 AT5G45775 320 / 1e-113 Ribosomal L5P family protein (.1.2) Potri.002G109701 [exp] 108 / 2e-31 AT2G42740 127 / 5e-39 ribosomal protein large subunit 16A (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033607 [exp] 323 / 1e-114 AT2G42740 362 / 7e-130 ribosomal protein large subunit 16A (.1) Lus10020715 [exp] 318 / 2e-112 AT2G42740 359 / 5e-129 ribosomal protein large subunit 16A (.1) Lus10017648 [exp] 306 / 3e-108 AT2G42740 343 / 1e-122 ribosomal protein large subunit 16A (.1) Lus10029824 [exp] 305 / 3e-107 AT2G42740 347 / 5e-124 ribosomal protein large subunit 16A (.1) Lus10007915 [exp] 52 / 4e-08 AT4G01310 364 / 3e-128 Ribosomal L5P family protein (.1) Lus10036390 [exp] 52 / 6e-08 AT4G01310 349 / 1e-121 Ribosomal L5P family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0652 [poplar] [flax] S24e_L23_L15e PF00281 [poplar] [flax] Ribosomal_L5 Ribosomal protein L5 CL0652 [poplar] [flax] PF00673 [poplar] [flax] Ribosomal_L5_C ribosomal L5P family C-terminus
Representative CDS sequence Show only first row Show all	>Potri.011G069200.2 pacid=42780249 polypeptide=Potri.011G069200.2.p locus=Potri.011G069200 ID=Potri.011G069200.2.v4.1 annot-version=v4.1 ATGCAGGCTTCAGAGAAGAAGCTATCAAACCCAATGAGAGAAATCAAGGTCCAGAAGCTGGTCCTCAACATCTCCGTCGGTGAAAGCGGAGACAGGCTCA CCCGTGCCGCCAAGGTGCTCGAACAACTCAGTGGGCAAACCCCGGTGTTCTCGAAAGCTAGGTATACTGTGAGATCTTTTGGGATTAGGCGTAATGAGAA GATTGCTTGCTATGTGACTGTGAGGGGAGACAAGGCTATGCAGTTGCTTGAGAGTGGGTTGAAGGTGAAGGAGTATGAGCTTTTGAGGAGGAACTTCAGT GACACTGGTTGCTTTGGTTTCGGCATCCAGGAGCACATTGATCTTGGAATCAAGTATGATCCTTCCACAGGTATTTACGGCATGGACTTCTATGTCGTTT TGGAACGTCCTGGGTACCGTGTTGGTCGTCGCCGCAGGTGCAAGTCACGTGTTGGTATTCATCAGAGAGTTACAAAGGATGACGCGATGAAATGGTTCCA GGTCAAATATGAAGGAGTCATCCTTAACAAATCCCAAAATATTTGA
AA sequence Show only first row Show all	>Potri.011G069200.2 pacid=42780249 polypeptide=Potri.011G069200.2.p locus=Potri.011G069200 ID=Potri.011G069200.2.v4.1 annot-version=v4.1 MQASEKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFS DTGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERPGYRVGRRRRCKSRVGIHQRVTKDDAMKWFQVKYEGVILNKSQNI

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G42740		RPL16A	ribosomal protein large subuni...		Potri.011G069200 [exp]	0	1	L16.2
AT1G70600			Ribosomal protein L18e/L15 sup...		Potri.006G202300 [exp]	1.41	0.9742	Pt-RPL27.4
AT5G04800			Ribosomal S17 family protein (...		Potri.010G241200 [exp]	1.73	0.9763
AT2G47110		UBQ6	ubiquitin 6 (.1.2)		Potri.015G111500 [exp]	2.44	0.9684	Pt-UBI.4
AT4G14320			Zinc-binding ribosomal protein...		Potri.007G071800 [exp]	5.19	0.9585
AT5G09500			Ribosomal protein S19 family p...		Potri.005G219700 [exp]	5.91	0.9661
AT4G16720			Ribosomal protein L23/L15e fam...		Potri.002G141500 [exp]	6.00	0.9535	Pt-RPL15.6
AT5G48760			Ribosomal protein L13 family p...		Potri.017G054600 [exp]	6.00	0.9561	RPL13.2
AT1G70600			Ribosomal protein L18e/L15 sup...		Potri.010G045800 [exp]	6.63	0.9571
AT2G27710			60S acidic ribosomal protein f...		Potri.009G146200 [exp]	6.63	0.9664
AT3G52590		HAP4, ERD16, UB...	HAPLESS 4, EARLY-RESPONSIVE TO...		Potri.012G024300 [exp]	7.48	0.9554	Pt-UBQ1.2

Compare expression of checked genes

Potri.011G069200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.