Plant FIBer expression Database

Potri.011G069300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G18740 76 / 4e-16 Rho termination factor (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G059300
[exp]
240 / 6e-80 AT4G18740 99 / 3e-25 Rho termination factor (.1.2.3)
Flax homologues

No hit found
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0306 HeH PF07498 Rho_N Rho termination factor, N-terminal domain
Representative CDS sequence
>Potri.011G069300.2 pacid=42781393 polypeptide=Potri.011G069300.2.p locus=Potri.011G069300 ID=Potri.011G069300.2.v4.1 annot-version=v4.1
ATGGCTTCAGCTCTTGTTTTCTATCCTCAAAACACTTTCTTCAACAAACCCTCTTGTATTTCTTTCAGCAAGCAGCTCAAGTTGTGGTGCCCCGTTTACT
CTCTTATAGATGGTTCCTTAGCTTTTGCATCACATAATGGTGTGCTTCAATTTAGTGTTTCAAGCATAAAGTCTGATGGAAGTAGCAAAGGCAGACCTCC
CCGGAAAAGTTCTGCACCAGGAAGAACAGAAAAGGAGGATGAGGATTCAAAGTCCCAATCTTCTGACAGAAAACAACCTATGTCATCTAACCAGGCGGAG
ATAATGGCCTTGTTCAGACGGATACAGTCTTCAATCTCAAAGGGAGAGTCTACAGCCACCAAGAAGAAAAAAGCTAGCAGGTCCAATGAGAATTCCCCAA
CCAATTCCATTTTGGAAGTTCTTCGCCATTCAACGAAGCACGCAAAAGGCCCAAGTACAGTCAGGGAAGGGAATAAGGTCCTGACACAAAAACGAAGTGT
GTCCAAGGACCAGAAGACGCAAGCAGAACATGCCTTGGAAGATGTTAAGTTAACCAGACCACCGTCTAATTTCACAAAGAAGTCCCCAATACCATCTCCA
TCAACCTCAAGAGAGAACACTACTGAGCTGAATAGTGAAGCATCAGAGGGCAAAGCCAGCAACCACAAGTTAGAGCTGCCTAGAGTAGAGAAAATGAAAC
TGACTGAACTGAAGGAACTAGCAAAGTCCAGGGGAATCAAAGGTTACTCAAAGTTGAAGAAGGGTGAGCTTCTGGAGTTGCTGAGGTCCTGA
AA sequence
>Potri.011G069300.2 pacid=42781393 polypeptide=Potri.011G069300.2.p locus=Potri.011G069300 ID=Potri.011G069300.2.v4.1 annot-version=v4.1
MASALVFYPQNTFFNKPSCISFSKQLKLWCPVYSLIDGSLAFASHNGVLQFSVSSIKSDGSSKGRPPRKSSAPGRTEKEDEDSKSQSSDRKQPMSSNQAE
IMALFRRIQSSISKGESTATKKKKASRSNENSPTNSILEVLRHSTKHAKGPSTVREGNKVLTQKRSVSKDQKTQAEHALEDVKLTRPPSNFTKKSPIPSP
STSRENTTELNSEASEGKASNHKLELPRVEKMKLTELKELAKSRGIKGYSKLKKGELLELLRS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G18740 Rho termination factor (.1.2.3... Potri.011G069300
[exp]
0 1
AT3G54360 zinc ion binding (.1) Potri.003G189400
[exp]
4.89 0.9547
AT3G55400 OVA1 OVULE ABORTION 1, methionyl-tR... Potri.010G207300
[exp]
6.16 0.9643
AT1G33780 Protein of unknown function (D... Potri.013G100000
[exp]
9.00 0.9479
AT3G62130 LCD L-cysteine desulfhydrase, Pyri... Potri.002G187200
[exp]
9.69 0.9247
AT4G37920 unknown protein Potri.007G000400
[exp]
15.58 0.9532
AT1G45230 Protein of unknown function (D... Potri.014G028300
[exp]
15.87 0.9505
AT1G22360 ATUGT85A2, AT2 UDP-glucosyl transferase 85A2 ... Potri.017G052166
[exp]
16.30 0.9184
AT5G47470 Nodulin MtN21 /EamA-like trans... Potri.003G077300
[exp]
16.94 0.9496 N21L4
AT1G67440 EMB1688 embryo defective 1688, Minichr... Potri.006G025300
[exp]
18.70 0.9453
AT1G08490 ATSUFS, SUFS, A... chloroplastic NIFS-like cystei... Potri.009G066000
[exp]
20.39 0.9361

Potri.011G069300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.