Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18780 1659 / 0 LEW2, IRX1, ATCESA8, CESA8 LEAF WILTING 2, IRREGULAR XYLEM 1, CELLULOSE SYNTHASE 8, cellulose synthase family protein (.1) AT5G44030 1302 / 0 IRX5, NWS2, CESA4 IRREGULAR XYLEM 5, cellulose synthase A4 (.1) AT5G17420 1285 / 0 ATCESA7, MUR10, IRX3 MURUS 10, IRREGULAR XYLEM 3, CELLULOSE SYNTHASE CATALYTIC SUBUNIT 7, Cellulose synthase family protein (.1) AT5G05170 1271 / 0 IXR1, CEV1, ATH-B, ATCESA3, CESA3 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) AT2G25540 1247 / 0 CESA10 cellulose synthase 10 (.1) AT4G32410 1239 / 0 AtCESA1, RSW1, CESA1 RADIALLY SWOLLEN 1, cellulose synthase 1 (.1) AT5G64740 1229 / 0 PRC1, IXR2, E112, CESA6 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) AT2G21770 1206 / 0 CESA09, CESA9 cellulose synthase A9 (.1) AT5G09870 1206 / 0 CESA5 cellulose synthase 5 (.1) AT4G39350 1189 / 0 ATH-A, CESA2, ATCESA2 cellulose synthase A2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G059600 [exp] 1873 / 0 AT4G18780 1655 / 0.0 LEAF WILTING 2, IRREGULAR XYLEM 1, CELLULOSE SYNTHASE 8, cellulose synthase family protein (.1) Potri.002G257900 [exp] 1286 / 0 AT5G44030 1526 / 0.0 IRREGULAR XYLEM 5, cellulose synthase A4 (.1) Potri.018G029400 [exp] 1283 / 0 AT4G32410 1898 / 0.0 RADIALLY SWOLLEN 1, cellulose synthase 1 (.1) Potri.018G103900 [exp] 1283 / 0 AT5G17420 1730 / 0.0 MURUS 10, IRREGULAR XYLEM 3, CELLULOSE SYNTHASE CATALYTIC SUBUNIT 7, Cellulose synthase family protein (.1) Potri.006G052600 [exp] 1282 / 0 AT5G05170 1749 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) Potri.006G181900 [exp] 1282 / 0 AT5G17420 1730 / 0.0 MURUS 10, IRREGULAR XYLEM 3, CELLULOSE SYNTHASE CATALYTIC SUBUNIT 7, Cellulose synthase family protein (.1) Potri.006G251900 [exp] 1281 / 0 AT4G32410 1899 / 0.0 RADIALLY SWOLLEN 1, cellulose synthase 1 (.1) Potri.013G019800 [exp] 1272 / 0 AT5G64740 1512 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Potri.016G054900 [exp] 1254 / 0 AT5G05170 1754 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007296 [exp] 1704 / 0 AT4G18780 1671 / 0.0 LEAF WILTING 2, IRREGULAR XYLEM 1, CELLULOSE SYNTHASE 8, cellulose synthase family protein (.1) Lus10029245 [exp] 1694 / 0 AT4G18780 1659 / 0.0 LEAF WILTING 2, IRREGULAR XYLEM 1, CELLULOSE SYNTHASE 8, cellulose synthase family protein (.1) Lus10012198 [exp] 1288 / 0 AT5G05170 1774 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) Lus10007538 [exp] 1287 / 0 AT5G05170 1772 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) Lus10028597 [exp] 1240 / 0 AT4G32410 1922 / 0.0 RADIALLY SWOLLEN 1, cellulose synthase 1 (.1) Lus10039607 [exp] 1239 / 0 AT5G05170 1820 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) Lus10018902 [exp] 1238 / 0 AT4G32410 1915 / 0.0 RADIALLY SWOLLEN 1, cellulose synthase 1 (.1) Lus10002939 [exp] 1196 / 0 AT5G64740 1870 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Lus10041063 [exp] 1193 / 0 AT5G64740 1868 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Lus10003526 [exp] 1192 / 0 AT5G64740 1863 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF13632 [poplar] [flax] Glyco_trans_2_3 Glycosyl transferase family group 2
Representative CDS sequence Show only first row Show all	>Potri.011G069600.1 pacid=42782127 polypeptide=Potri.011G069600.1.p locus=Potri.011G069600 ID=Potri.011G069600.1.v4.1 annot-version=v4.1 ATGATGGAATCTGGGGCTCCTTTATGCCATAGCTGTGGTGACCAGGTGGGACATGATGCAAATGGAGACCTGTTTGTGGCTTGCCATGAGTGTAACTATC ACATGTGCAAGTCTTGTTTCGAGTATGAGATCAAGGAGGGGCGGAAAGTTTGCTTGCGATGTGGCTCACCATATGATGAGAACTTGCTGGATGATGTAGA AAAGAAGGGGTCTGGCAATCAATCCACAATGGCATCTCACCTCAACAATTCTCAGGATGTAGGAATTCATGCTAGACATATCAGTAGCGTTTCCACAGTG GATAGTGAAATGAATGATGAATATGGGAATCCAATTTGGAAGAATCGGGTGGAGAGTTGGAAGGATAAAAAGAACAAGAAGAAAAAGTCTAATACTAAGC CTGAAACTGAACCAGCTCAAGTTCCGCCGGAACAGCAGATGGAAGAGAAGCCGTCTGCTGAGGCTTCGGAGCCACTTTCAATTGTTTATCCAATTCCACG CAACAAACTCACACCATACAGAGCTGTGATCATTATGCGACTGATCATTCTGGGCCTTTTCTTCCACTACAGAATAACAAATCCTGTTGATAGTGCCTTC GGCCTGTGGCTTACTTCTGTCATATGTGAGATCTGGTTTGCATTTTCTTGGGTGTTGGATCAATTTCCCAAGTGGAATCCTGTCAACAGAGAAGCATTTA TCGACAGGCTATCTGCAAGGTATGAAAGAGAGGGTGAGCCTTCTCAGCTTGCTGCCGTGGATTTTTTCGTCAGTACTGTTGACCCACTGAAAGAGCCTCC ATTGATCACTGCCAATACAGTCCTTTCCATCCTTGCTGTGGACTATCCCGTGGATAAAGTTTCCTGCTATGTGTCTGATGATGGTGCTGCCATGCTTACA TTTGAATCTCTTGTAGAAACAGCTGAGTTTGCAAGGAAGTGGGTTCCATTCTGCAAAAAATTCTCAATTGAACCAAGAGCACCAGAGTTTTACTTCTCAC AGAAAATTGATTACTTGAAAGATAAGGTTCAGCCTTCTTTCGTGAAAGAACGCAGAGCGATGAAAAGGGACTATGAAGAGTACAAAGTCCGAGTTAATGC CCTGGTAGCAAAGGCACAGAAAACACCTGACGAGGGATGGACTATGCAAGACGGAACACCTTGGCCTGGAAATAACACACGTGATCACCCTGGCATGATT CAGGTATTCCTTGGAAACACCGGAGCTCGTGACATAGAGGGAAATGAACTACCTCGACTGGTATATGTTTCCAGGGAGAAGAGACCTGGCTACCAACACC ACAAGAAAGCCGGTGCTGAAAATGCTCTGGTGAGAGTGTCTGCAGTTCTCACAAATGCTCCGTACATCCTCAATCTTGATTGTGATCACTATGTAAACAA TAGCAAGGCTGTTCGAGAGGCAATGTGCATCCTGATGGATCCACAAGTAGGTCGAGATGTATGCTATGTGCAGTTCCCTCAGAGGTTTGATGGCATAGAT AGGAGTGATCGCTACGCCAATCGTAACATAGTTTTCTTTGATGTTAACATGAAAGGATTGGATGGCATTCAAGGACCAATGTATGTGGGAACTGGTTGTG TTTTCAATAGGCAAGCACTTTACGGATATGGGCCTCCTTCTATGCCCCGCTTACGCAAGGGCAAGGAGTCTTCATCCTGCTTCTCATGTTGCTGCCCCAC AAAGAAGAAGCCTGCTCAGGATCCAGCTGAGGTTTACAAAGATGCAAAACGAGAGGATCTCAATGCTGCCATATTCAATCTTACAGAGATTGATAATTAT GATGAGTATGAGAGGTCAATGCTGATCTCCCAGTTGAGCTTTGAGAAAACTTTTGGCTTATCTTCTGTCTTCATTGAGTCTACACTAATGGAGAATGGAG GAGTACCTGAGTCTGCCAATTCATCAACACTCATCAAGGAAGCTATTCATGTTATCGGCTGTGGCTTTGAAGAGAAGACTGAATGGGGAAAAGAGATTGG TTGGATATATGGGTCGGTCACTGAGGATATCTTAAGTGGATTCAAGATGCACTGCCGAGGATGGAGATCAATATACTGCATGCCCGTAAGGCCAGCATTC AAAGGATCTGCACCCATCAATCTTTCTGATAGATTGCACCAGGTTCTCCGATGGGCTCTTGGATCTGTGGAAATTTTCTTTAGTAGACATTGTCCTCTCT GGTACGGGTATGGAGGAGGCCGTCTTAAATGGCTCCAAAGGCTTGCATATATAAACACCATTGTTTATCCATTTACATCCCTCCCTCTCATTGCTTACTG CACAATTCCTGCAGTTTGTCTGCTCACTGGAAAATTCATCATACCAACGCTCTCAAACCTGGCAAGCATGCTGTTTCTTGGCCTCTTTATCTCTATCATT GTAACTGCAGTGCTTGAGCTAAGATGGAGTGGTGTCAGCATTGAAGATTTGTGGCGTAATGAACAGTTCTGGGTGATCGGAGGTGTTTCAGCCCATCTCT TTGCCGTCTTCCAGGGATTCTTGAAATTGTTGGCTGGCATTGATACGAACTTTACTGTCACAGCAAAAGCAGCCGATGATACAGAATTTGGGGAGCTCTA TATGGTCAAGTGGACAACACTTCTGATTCCTCCAACAACACTTCTCATTATCAACATTGTTGGTGTTGTTGCGGGATTCTCTGATGCACTCAACAAAGGA TATGAAGCATGGGGACCTCTCTTTGGCAAGGTGTTCTTTGCCTTGTGGGTGATTCTTCATCTCTATCCATTCCTTAAAGGTCTGATGGGTCGCCAAAACC GAACACCAACCATTGTTGTTCTGTGGTCAGTGCTGTTGGCCTCTGTCTTCTCTCTTGTCTGGGTCAAGATTAATCCATTCGTTAACAAAGTTGACAACAC CTTGGCTGGTGAAACCTGCATTTCTATAGATTGCTGA
AA sequence Show only first row Show all	>Potri.011G069600.1 pacid=42782127 polypeptide=Potri.011G069600.1.p locus=Potri.011G069600 ID=Potri.011G069600.1.v4.1 annot-version=v4.1 MMESGAPLCHSCGDQVGHDANGDLFVACHECNYHMCKSCFEYEIKEGRKVCLRCGSPYDENLLDDVEKKGSGNQSTMASHLNNSQDVGIHARHISSVSTV DSEMNDEYGNPIWKNRVESWKDKKNKKKKSNTKPETEPAQVPPEQQMEEKPSAEASEPLSIVYPIPRNKLTPYRAVIIMRLIILGLFFHYRITNPVDSAF GLWLTSVICEIWFAFSWVLDQFPKWNPVNREAFIDRLSARYEREGEPSQLAAVDFFVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGAAMLT FESLVETAEFARKWVPFCKKFSIEPRAPEFYFSQKIDYLKDKVQPSFVKERRAMKRDYEEYKVRVNALVAKAQKTPDEGWTMQDGTPWPGNNTRDHPGMI QVFLGNTGARDIEGNELPRLVYVSREKRPGYQHHKKAGAENALVRVSAVLTNAPYILNLDCDHYVNNSKAVREAMCILMDPQVGRDVCYVQFPQRFDGID RSDRYANRNIVFFDVNMKGLDGIQGPMYVGTGCVFNRQALYGYGPPSMPRLRKGKESSSCFSCCCPTKKKPAQDPAEVYKDAKREDLNAAIFNLTEIDNY DEYERSMLISQLSFEKTFGLSSVFIESTLMENGGVPESANSSTLIKEAIHVIGCGFEEKTEWGKEIGWIYGSVTEDILSGFKMHCRGWRSIYCMPVRPAF KGSAPINLSDRLHQVLRWALGSVEIFFSRHCPLWYGYGGGRLKWLQRLAYINTIVYPFTSLPLIAYCTIPAVCLLTGKFIIPTLSNLASMLFLGLFISII VTAVLELRWSGVSIEDLWRNEQFWVIGGVSAHLFAVFQGFLKLLAGIDTNFTVTAKAADDTEFGELYMVKWTTLLIPPTTLLIINIVGVVAGFSDALNKG YEAWGPLFGKVFFALWVILHLYPFLKGLMGRQNRTPTIVVLWSVLLASVFSLVWVKINPFVNKVDNTLAGETCISIDC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G18780		LEW2, IRX1, ATC...	LEAF WILTING 2, IRREGULAR XYLE...		Potri.011G069600 [exp]	0	1
AT5G19610		GNL2	GNOM-like 2 (.1)		Potri.018G075300 [exp]	1.41	0.9439
AT5G06390		FLA17	FASCICLIN-like arabinogalactan...		Potri.012G006200 [exp]	2.44	0.9328
AT2G47480			Protein of unknown function (D...		Potri.013G010600 [exp]	2.64	0.9155
AT3G06600			unknown protein		Potri.010G147301 [exp]	3.46	0.9232
AT5G23870			Pectinacetylesterase family pr...		Potri.012G142300 [exp]	4.47	0.9064
AT2G39770		VTC1, SOZ1, GMP...	VITAMIN C DEFECTIVE 1, SENSITI...		Potri.008G060100 [exp]	6.00	0.8691	Pt-EMB101.2
AT3G56740			Ubiquitin-associated (UBA) pro...		Potri.016G035800 [exp]	6.63	0.8787
AT4G26510		UKL4	uridine kinase-like 4 (.1.2)		Potri.011G165100 [exp]	6.92	0.8994
					Potri.005G218650 [exp]	8.36	0.9029
AT5G61840		GUT1, IRX10-L	Exostosin family protein (.1)		Potri.012G109200 [exp]	8.48	0.9057

Compare expression of checked genes

Potri.011G069600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.