Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45760 495 / 1e-176 Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G61210 54 / 2e-07 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G11160 52 / 5e-07 Transducin/WD40 repeat-like superfamily protein (.1) AT2G16780 50 / 1e-06 MSI02, NFC2, NFC02, MSI2 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2, MULTICOPY SUPPRESSOR OF IRA1 2, Transducin family protein / WD-40 repeat family protein (.1) AT4G35050 49 / 3e-06 NFC3, MSI3 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) AT5G08390 48 / 1e-05 Transducin/WD40 repeat-like superfamily protein (.1) AT5G23430 47 / 2e-05 Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G73720 46 / 3e-05 SMU1 SUPPRESSORS OF MEC-8 AND UNC-52 1, transducin family protein / WD-40 repeat family protein (.1) AT1G27840 44 / 9e-05 ATCSA-1 Transducin/WD40 repeat-like superfamily protein (.1.2.3) AT4G02730 43 / 0.0002 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G002300 [exp] 52 / 4e-07 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.004G175300 [exp] 51 / 8e-07 AT2G16780 593 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2, MULTICOPY SUPPRESSOR OF IRA1 2, Transducin family protein / WD-40 repeat family protein (.1) Potri.010G255400 [exp] 51 / 1e-06 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.009G135100 [exp] 50 / 2e-06 AT2G16780 612 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2, MULTICOPY SUPPRESSOR OF IRA1 2, Transducin family protein / WD-40 repeat family protein (.1) Potri.019G087200 [exp] 47 / 2e-05 AT1G71840 515 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.005G148500 [exp] 46 / 2e-05 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G051900 [exp] 45 / 5e-05 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.015G069700 [exp] 44 / 0.0002 AT1G62020 2100 / 0.0 Coatomer, alpha subunit (.1) Potri.012G074800 [exp] 43 / 0.0003 AT1G62020 2113 / 0.0 Coatomer, alpha subunit (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007297 [exp] 550 / 0 AT5G45760 488 / 4e-173 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10029246 [exp] 545 / 0 AT5G45760 488 / 7e-174 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10005074 [exp] 50 / 1e-06 AT4G35050 590 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) Lus10011224 [exp] 50 / 2e-06 AT1G11160 665 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10018458 [exp] 50 / 2e-06 AT1G11160 668 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10027848 [exp] 48 / 7e-06 AT4G35050 585 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) Lus10041007 [exp] 47 / 2e-05 AT5G23430 721 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10020916 [exp] 44 / 0.0002 AT5G58230 782 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10033460 [exp] 43 / 0.0002 AT5G58230 781 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10013452 [exp] 44 / 0.0003 AT1G50410 1003 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.011G069700.2 pacid=42780376 polypeptide=Potri.011G069700.2.p locus=Potri.011G069700 ID=Potri.011G069700.2.v4.1 annot-version=v4.1 ATGACAGAGCCAAGGAGATTGAGAGGTCACAAAGCCACTGCCACGTGCTGCATCGCCTCACGTGACCGTTCTGGTGTCGTCGCCACCGCCGGGGAGGATG GTTGCATCTGCTTGTTTGATATGCGATGCAAAGACGCGCAGCATATTGCTGAAGTTGCACAGGAACCTATTTCTTCCTTGTCTTTCAAGCCTGGGAATGA AGATATCATGTATGTTTCCTGTGGAAATGCAGTAAAGTGTTTTGATTTGCATAATATGGCTAGTCCGTGGACACCATTCAAGAGTTATACCTATAACAAG GAGGAAATAAATCAGATTTCATGCAACTCTAAGGCAACTTTTCTTGCTTCTACAGATGATGGTGGCGATGTTAAGATTATTGACATTCGCCAGCATTGCC TTTATAAAACTCTGAGATCTGGCCATTCAAGTATTTGCAGCAGTGTACAATTCATTCCATGGAGATCTTGGGAAGTCATTACTGGAGGTCTTGACTCAAA GCTTGTCATGTGGGACTTCTCCAAAGGGCGCCCAGTCAAAATTGTGGATTTTGGTTTGCCTGACATAAAGAACGGTAGCAATGGGGCACAATGTTTGAAT CCTGCATTTGTTCATGCAATAGCAGTTCCAGATGTTGATATGTTGGATAAGTCTGATAAAATATGTGTTGTGGCTAGGGGTGATGGTATTGTTGATGTAA TAAATATTGAATCAGAGCTTGCAGTTATTAGATCAAAAACTTCAGCAAAAGCACGGAAAGGATCTTCATCAACATCTAAAGATGGTGTTCCAGCTGCAGG TACAGGAACTCTTGATGAAAATGCAAGAAAAAGGTTACATTTGGATTACTCTGTGGGCGGCCATGCTGCTGCTGTATCCTGTGTCACATTTTCACAGTTT GGGGAGAAGGGGAAGTTGATAATATCAGGTGGGAATGACAAGTCTGTGAAAGTCTGGGATTGCTCCAAATATGATGATGCAGTGCAGACTGGTGGCAACA GTGATGTTCTTCGTCTTAACATTAATTTGAGCAAAAAGGTCAATTGGCTCTGTACCACTCCGACTGACTCAGAAAACCTTGTTGTTTGTGACACAACAAA AGTAGTAAAGGTCTATTCTGTTTCTTAG
AA sequence Show only first row Show all	>Potri.011G069700.2 pacid=42780376 polypeptide=Potri.011G069700.2.p locus=Potri.011G069700 ID=Potri.011G069700.2.v4.1 annot-version=v4.1 MTEPRRLRGHKATATCCIASRDRSGVVATAGEDGCICLFDMRCKDAQHIAEVAQEPISSLSFKPGNEDIMYVSCGNAVKCFDLHNMASPWTPFKSYTYNK EEINQISCNSKATFLASTDDGGDVKIIDIRQHCLYKTLRSGHSSICSSVQFIPWRSWEVITGGLDSKLVMWDFSKGRPVKIVDFGLPDIKNGSNGAQCLN PAFVHAIAVPDVDMLDKSDKICVVARGDGIVDVINIESELAVIRSKTSAKARKGSSSTSKDGVPAAGTGTLDENARKRLHLDYSVGGHAAAVSCVTFSQF GEKGKLIISGGNDKSVKVWDCSKYDDAVQTGGNSDVLRLNINLSKKVNWLCTTPTDSENLVVCDTTKVVKVYSVS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G45760			Transducin/WD40 repeat-like su...		Potri.011G069700 [exp]	0	1
AT2G42240			RNA-binding (RRM/RBD/RNP motif...		Potri.007G046600 [exp]	2.44	0.6966
AT5G20930		TSL	TOUSLED, Protein kinase superf...		Potri.009G155400 [exp]	10.14	0.7379
AT2G47830			Cation efflux family protein (...		Potri.002G209023 [exp]	11.61	0.6840
AT5G04895			DEA(D/H)-box RNA helicase fami...		Potri.010G246000 [exp]	16.12	0.6654
AT1G07910		ATRNL, RNL, AtR...	ARABIDOPSIS THALIANA RNA LIGAS...		Potri.016G083100 [exp]	27.22	0.6255
AT5G23690			Polynucleotide adenylyltransfe...		Potri.015G104300 [exp]	28.70	0.6401
AT5G08550		ILP1	increased level of polyploidy1...		Potri.006G020200 [exp]	29.69	0.6178
AT2G29210			splicing factor PWI domain-con...		Potri.009G036900 [exp]	35.49	0.6568
AT2G25710		HCS1	holocarboxylase synthase 1 (.1...		Potri.002G087700 [exp]	35.91	0.5069
AT2G04560		AtLpxB	lipid X B, transferases, trans...		Potri.014G160300 [exp]	40.43	0.6221

Compare expression of checked genes

Potri.011G069700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.