Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18820 1046 / 0 AAA-type ATPase family protein (.1) AT5G45720 914 / 0 AAA-type ATPase family protein (.1.2) AT1G14460 285 / 1e-79 AAA-type ATPase family protein (.1) AT2G02480 274 / 1e-75 STI STICHEL, AAA-type ATPase family protein (.1) AT4G24790 235 / 3e-64 AAA-type ATPase family protein (.1.2) AT1G77470 44 / 0.0005 EMB2810, RFC5, RFC3 replication factor C 5, EMBRYO DEFECTIVE 2810, replication factor C subunit 3 (.1) AT1G21690 43 / 0.0008 RFC4, EMB1968 replication factor C 4, embryo defective 1968, ATPase family associated with various cellular activities (AAA)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G061700 [exp] 1888 / 0 AT4G18820 1031 / 0.0 AAA-type ATPase family protein (.1) Potri.004G230300 [exp] 281 / 6e-78 AT2G02480 1189 / 0.0 STICHEL, AAA-type ATPase family protein (.1) Potri.012G091700 [exp] 265 / 2e-73 AT4G24790 656 / 0.0 AAA-type ATPase family protein (.1.2) Potri.003G044900 [exp] 263 / 3e-72 AT2G02480 1147 / 0.0 STICHEL, AAA-type ATPase family protein (.1) Potri.015G088100 [exp] 249 / 1e-68 AT4G24790 664 / 0.0 AAA-type ATPase family protein (.1.2) Potri.002G081200 [exp] 46 / 0.0001 AT1G77470 577 / 0.0 replication factor C 5, EMBRYO DEFECTIVE 2810, replication factor C subunit 3 (.1) Potri.005G181300 [exp] 44 / 0.0008 AT1G21690 551 / 0.0 replication factor C 4, embryo defective 1968, ATPase family associated with various cellular activities (AAA)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007316 [exp] 1105 / 0 AT4G18820 1072 / 0.0 AAA-type ATPase family protein (.1) Lus10029265 [exp] 1087 / 0 AT4G18820 1042 / 0.0 AAA-type ATPase family protein (.1) Lus10015234 [exp] 939 / 0 AT4G18820 934 / 0.0 AAA-type ATPase family protein (.1) Lus10005422 [exp] 833 / 0 AT4G18820 909 / 0.0 AAA-type ATPase family protein (.1) Lus10042401 [exp] 253 / 1e-68 AT2G02480 1051 / 0.0 STICHEL, AAA-type ATPase family protein (.1) Lus10033035 [exp] 234 / 4e-64 AT4G24790 687 / 0.0 AAA-type ATPase family protein (.1.2) Lus10013665 [exp] 234 / 7e-64 AT4G24790 702 / 0.0 AAA-type ATPase family protein (.1.2) Lus10026270 [exp] 180 / 8e-46 AT2G02480 626 / 0.0 STICHEL, AAA-type ATPase family protein (.1) Lus10018144 [exp] 49 / 2e-05 AT1G77470 564 / 0.0 replication factor C 5, EMBRYO DEFECTIVE 2810, replication factor C subunit 3 (.1) Lus10025689 [exp] 47 / 9e-05 AT1G77470 568 / 0.0 replication factor C 5, EMBRYO DEFECTIVE 2810, replication factor C subunit 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0604 [poplar] [flax] post-AAA PF12169 [poplar] [flax] DNA_pol3_gamma3 DNA polymerase III subunits gamma and tau domain III CL0023 [poplar] [flax] P-loop_NTPase PF13177 [poplar] [flax] DNA_pol3_delta2 DNA polymerase III, delta subunit
Representative CDS sequence Show only first row Show all	>Potri.011G071300.1 pacid=42782102 polypeptide=Potri.011G071300.1.p locus=Potri.011G071300 ID=Potri.011G071300.1.v4.1 annot-version=v4.1 ATGACCAAGGCTGTCCGCACTAGGATTCTCAAGGATGCAAATGGTGATATCGGTGATCATCTTCGAAATCATATTCATTTGACCAATTGTATTCATCTGA AAAACCATATGCTTAAGCAAAGCCCCATTCTGGCTGATAGGTCATTAATCCGGGACCTCATTGCCCTTCAGAGGTCCCGATCTTTGAGGGACCCTTCGGC CAGTCCTCCTTCATGGCACTCACCTTCTGTAGTTGATTTGCTTCCTAAGAAAGGGGACACAGATGCAACCATTCGAGAAGGTAGAAGCTCGGTTGGCACC GAGCGTCGAAGGGAAGGTAGGAGGTTGTTCGGTAGTTCTTCACCCTCGGCAAATTTGGCACCATCAAAGGTTGTCCCAAGTGATGTTAGTGGGGGTAATA ATGATGGGGTAGCAGCTATTAGTGATCGTAGCATTAATAGTGGATTTAGGGATGGTAGAAGAGTTAAGAGAGAAGAATCTAGTAAAAAAAGTAATAGGGT TAATCAGCTGGGTGGTGATGGAGACCCTTTACAAGATCAAGCTGTTGATGGTTTAATTCATGATACCGTTTCAGGGAATTCCGAATCAAAAGATAGAAAA AGTAAACATAAGGGGAAGCATAGTCAAGATGTGCATATTAAGACCCTTTCAGAGCAGCTACATGAGATTCCAATGGATACTGATGTGGCATCTTCCAACA TGCATCTTCATGGAAGACACACCCGGCAGGAGAAAATTGTTGAGCCTGAGACCAGTATTCGTGGCTATGGCGGGGTGCATAGAGTGAGAAGGCGAAAGTT TCGAAGTACCAGAAGAACTCGGGCTTCTGCTCCAGCTTCAAGGGATGTTGGGGGACAGAAGGAAATGTCTGTTGCTTCCAATTCATTTGCTCAAGGTTCA GCACGGCCAAGGTATCACATGGAGGAAGAAGAATATGGGGACCAAAATGTCACAAGGGCTCCCAGAAATGGATGTGGGATTCCATGGAATTGGTCAGGAA TTCATCACAGGGGTAAAACAATCCTTGATATTGCTGGAAGAAGCTTATCTTGTGGCTTGTCAGACACAAGGAAAGGTAGCACTGCTTCCCATGGGAGAGA TTTTCCTGGTATGCCTGTGGCATCTGATCGTTCTAGTTCATCTACTAAATCTGATGTAGAGGCTTTGCCTCTACTAGTGGAGGCATCCGGATCCCAAGAA AGCACTGATAATGCTGGTTGGGTGCACGACTATTCAGGAGAGCTAGGTATATATGCTGATCATTTGTTGAAAAATGATATTGATTCTGATCTTGCTTCTG AAGCTAGATCTGGTGAACAACGTAAGCTTGGGCGGAACCAGAATGGTAGGCATCAAAATCTTACACAAAGGTACATGCCGAGAACCTTCAGAGATCTAGT GGGACAGAATTTAGCAGCGCAAGCTCTTTCTAATGCTGCTGTTAGGAGGAAGGTTGGGTTTCTATATGTGTTTTATGGGCCTCATGGTACTGGGAAAACC TCATGTGCTCGGATATTTTCCAGAGCTTTGAATTGTCAATCTCTGGAACATCCCAAACCTTGTGGCTATTGCAATTCTTGCATTTCACATGATATGGGTA AGAGCCGAAATATAAGGGAAGTTGGCCCAGTCAGTAATTTTGACTTCAAGAGCATCATAGATTTGCTTGACAATATGATTATTTCTCAGACGCCATCTCA ATATAGAGTTTTTATTTTCGATGACTGTGATACTCTGGCCCCTGACTGCTGGAGTGCCATATCGAAGGTCATTGATCGAGCACCCAGACGTGTAGTTTTT GTCCTTGTCTGCTCAAGTCTTGATGTTTTGCCTCATATAATTATATCCAGATGCCAGAAATTCTTTTTCCCAAAGCTTAAAGATGCAGATATTATATATA CTTTGCAGTGGATTTCATCCAAAGAAGATATAGATATTGATAAGGATGCTCTAAAACTTATTGCATCGCGATCAGATGGATCTTTGAGGGATGCTGAGAT GACACTTGAACAATTAAGTTTGCTTGGGCAGAAGATATCTGTTCCTCTGGTTCAGGAATTGGTTGGACTAATCTCTGATGAAAAATTAGTGGATCTTCTT GATTTAGCAATATCTGCAGACACAGTAAATACTGTGAAGAATTTGAGAGTCATAATGGAAACTGGTGTAGAGCCATTAGCTTTAATGTCACAACTTGCTA CAGTTATCACTGATATACTAGCTGGTAGCTATGATTTCACAAAAGAAAGGCCTAGAAGGAAGTTTTTTCGACGAAATCCATTGTCCAAAGATGATATGGA AAAGCTGCGTCAGGCCCTCAAAACTTTGTCAGAGGCTGAAAAACAACTTAGGATGTCAAATGACAAATTAACATGGCTAACAGCTGCCTTGCTTCAACTT GCTCCCGATCAGCAGTATCTGCTCCCTAGTTCATCCACAGAAACTAGTTTTAATCATAGCCCTCTGGCCCTAAATAACATGGGTGGAAGAGATATTGCCA GGAAAGGTGGTGAACGGGTGGAGATGCCCAATAACAAGAGAGGTTTGTCAACGCATGTCAGATTGGAAAATCTCCCTGGTGGAACTTCTGCTAATTTCCA GAACAGTGGTTCAACAAATGGTATTAACATGGACAGAAAAAGAAATGCTGCATCTGGGATGGCTTCTCAATGGACATCTGTGCAAACTTCTGATGCAGTC CGGGTGAATGGCAGGCAGGTTTCAGGTAAAAGCCGTAAGGGACATGAAGAAATTTGGTTGGAGGTGCTTGAGAAGATTCAAATTAACAGTATGAGAGAGT TCTTGTATCAAGAAGGAAAGCTAATCTCTGTCAGTTTTGGGGCAGCTCCAACTGTGCAGTTGATATTCAGTTCACATCTCACCAAATTGAAGGCAGAGAA GTTTAGGGCACATATTTTACAAGCATTTGAATCTGTTCTTGGATCGCCAGTGACAATTGAGATCCGATGTGAGTTGAACAAGGAAACAAATGCAGGGTTC CACTTGCCAGCAGCTTCTAAAATTGGTTCATCTCAGATGGCTATGGACTCAGAGCCTAATGCTGGGAGCAGAATGCCTAGGACTGGAGATTCTCTAGAAG GGAGGAGTGAAATTGTTGAAATACCAGCTTCTCCAAGGAAATATGAGGGTAATGAACCAGCAAACCACAATGTAGAATCTAGTAGAAGAGGTTTACAGCG CACATGGGCAGGAGAATCAGTTTCGAATAAGAAACCAGCCATGGGGTCTATGGTGGAAAGAAGAATACTTGGGGAACCAAGTCAGAGTAAGAGCATTGTG AGAAGCAAGGTTTCCCTTGCGCATGTAATTCAGCAAGCTGAAGGATGTACACAGCAGGCTGAATGGTCAAAACACAAAGCAGTCTCCATAGCTGAAAAGC TTGAACAAGAAAATTTGAGACTGGAACCTAGATCAAGAAGCTTGCTTTGCTGGAAAGCAACAAGAGTGACACGTCGGAAGCTTTCTCGTATGAAAATCAG GACACGAAAACCACGTTCATTACTGAAGCTTGTCTCCTGTGGAAAGTGTCTCTCTTCTAAACCTCCTAGGTAG
AA sequence Show only first row Show all	>Potri.011G071300.1 pacid=42782102 polypeptide=Potri.011G071300.1.p locus=Potri.011G071300 ID=Potri.011G071300.1.v4.1 annot-version=v4.1 MTKAVRTRILKDANGDIGDHLRNHIHLTNCIHLKNHMLKQSPILADRSLIRDLIALQRSRSLRDPSASPPSWHSPSVVDLLPKKGDTDATIREGRSSVGT ERRREGRRLFGSSSPSANLAPSKVVPSDVSGGNNDGVAAISDRSINSGFRDGRRVKREESSKKSNRVNQLGGDGDPLQDQAVDGLIHDTVSGNSESKDRK SKHKGKHSQDVHIKTLSEQLHEIPMDTDVASSNMHLHGRHTRQEKIVEPETSIRGYGGVHRVRRRKFRSTRRTRASAPASRDVGGQKEMSVASNSFAQGS ARPRYHMEEEEYGDQNVTRAPRNGCGIPWNWSGIHHRGKTILDIAGRSLSCGLSDTRKGSTASHGRDFPGMPVASDRSSSSTKSDVEALPLLVEASGSQE STDNAGWVHDYSGELGIYADHLLKNDIDSDLASEARSGEQRKLGRNQNGRHQNLTQRYMPRTFRDLVGQNLAAQALSNAAVRRKVGFLYVFYGPHGTGKT SCARIFSRALNCQSLEHPKPCGYCNSCISHDMGKSRNIREVGPVSNFDFKSIIDLLDNMIISQTPSQYRVFIFDDCDTLAPDCWSAISKVIDRAPRRVVF VLVCSSLDVLPHIIISRCQKFFFPKLKDADIIYTLQWISSKEDIDIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQKISVPLVQELVGLISDEKLVDLL DLAISADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKERPRRKFFRRNPLSKDDMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQL APDQQYLLPSSSTETSFNHSPLALNNMGGRDIARKGGERVEMPNNKRGLSTHVRLENLPGGTSANFQNSGSTNGINMDRKRNAASGMASQWTSVQTSDAV RVNGRQVSGKSRKGHEEIWLEVLEKIQINSMREFLYQEGKLISVSFGAAPTVQLIFSSHLTKLKAEKFRAHILQAFESVLGSPVTIEIRCELNKETNAGF HLPAASKIGSSQMAMDSEPNAGSRMPRTGDSLEGRSEIVEIPASPRKYEGNEPANHNVESSRRGLQRTWAGESVSNKKPAMGSMVERRILGEPSQSKSIV RSKVSLAHVIQQAEGCTQQAEWSKHKAVSIAEKLEQENLRLEPRSRSLLCWKATRVTRRKLSRMKIRTRKPRSLLKLVSCGKCLSSKPPR

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G18820			AAA-type ATPase family protein...		Potri.011G071300 [exp]	0	1
AT5G58320			Kinase interacting (KIP1-like)...		Potri.019G061600 [exp]	3.46	0.8043
AT4G22730			Leucine-rich repeat protein ki...		Potri.003G115100 [exp]	4.89	0.7950
AT5G55540		LOP1, TRN1	LOPPED 1, tornado 1 (.1)		Potri.001G361200 [exp]	5.47	0.7805
AT1G20823			RING/U-box superfamily protein...		Potri.010G235200 [exp]	6.24	0.7038
AT1G23170			Protein of unknown function DU...		Potri.017G124300 [exp]	7.21	0.7174
AT1G47380			Protein phosphatase 2C family ...		Potri.014G031200 [exp]	9.00	0.7167
AT3G08840			D-alanine--D-alanine ligase fa...		Potri.006G106000 [exp]	11.53	0.7306
AT5G64667		IDL2	inflorescence deficient in abs...		Potri.005G189900 [exp]	12.64	0.7861
AT3G44480		COG1, RPP10, RP...	recognition of peronospora par...		Potri.018G145580 [exp]	15.74	0.7744
AT5G18840			Major facilitator superfamily ...		Potri.010G026500 [exp]	17.49	0.7598

Compare expression of checked genes

Potri.011G071300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.