Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29340 887 / 0 ATPUB17, PUB17 ARABIDOPSIS THALIANA PLANT U-BOX 17, plant U-box 17 (.1) AT5G01830 328 / 2e-102 ARM repeat superfamily protein (.1) AT3G46510 290 / 3e-88 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) AT3G54850 255 / 3e-75 ATPUB14 plant U-box 14 (.1) AT5G42340 244 / 4e-71 PUB15 Plant U-Box 15 (.1) AT1G23030 238 / 3e-69 PUB11 ARM repeat superfamily protein (.1) AT2G28830 241 / 5e-68 AtPUB12 PLANT U-BOX 12 (.1) AT1G71020 231 / 1e-66 ARM repeat superfamily protein (.1.2) AT1G60190 219 / 1e-61 AtPUB19 plant U-box 19, ARM repeat superfamily protein (.1) AT1G10560 210 / 2e-58 ATPUB18 ARABIDOPSIS THALIANA PLANT U-BOX 18, plant U-box 18 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G061800 [exp] 1112 / 0 AT1G29340 833 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 17, plant U-box 17 (.1) Potri.008G071600 [exp] 360 / 2e-114 AT3G46510 345 / 2e-109 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.006G107600 [exp] 360 / 3e-114 AT5G01830 729 / 0.0 ARM repeat superfamily protein (.1) Potri.016G134000 [exp] 354 / 2e-112 AT5G01830 702 / 0.0 ARM repeat superfamily protein (.1) Potri.010G185900 [exp] 349 / 3e-110 AT3G46510 335 / 2e-105 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.012G078900 [exp] 308 / 1e-94 AT1G60190 513 / 3e-174 plant U-box 19, ARM repeat superfamily protein (.1) Potri.015G074200 [exp] 307 / 3e-94 AT1G60190 501 / 2e-169 plant U-box 19, ARM repeat superfamily protein (.1) Potri.009G029600 [exp] 281 / 7e-85 AT3G46510 935 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.008G035700 [exp] 274 / 2e-82 AT3G54850 821 / 0.0 plant U-box 14 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007317 [exp] 951 / 0 AT1G29340 899 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 17, plant U-box 17 (.1) Lus10029266 [exp] 494 / 3e-171 AT1G29340 430 / 3e-146 ARABIDOPSIS THALIANA PLANT U-BOX 17, plant U-box 17 (.1) Lus10006090 [exp] 385 / 3e-124 AT5G01830 764 / 0.0 ARM repeat superfamily protein (.1) Lus10025244 [exp] 383 / 2e-123 AT5G01830 765 / 0.0 ARM repeat superfamily protein (.1) Lus10007511 [exp] 369 / 1e-117 AT3G46510 397 / 2e-129 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10017444 [exp] 353 / 7e-112 AT3G46510 381 / 2e-123 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10029267 [exp] 285 / 6e-91 AT1G29340 319 / 1e-104 ARABIDOPSIS THALIANA PLANT U-BOX 17, plant U-box 17 (.1) Lus10029163 [exp] 278 / 2e-83 AT1G60190 571 / 0.0 plant U-box 19, ARM repeat superfamily protein (.1) Lus10040834 [exp] 278 / 3e-83 AT3G46510 879 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10016565 [exp] 276 / 1e-82 AT3G46510 884 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF00514 [poplar] [flax] Arm Armadillo/beta-catenin-like repeat CL0229 [poplar] [flax] RING PF04564 [poplar] [flax] U-box U-box domain
Representative CDS sequence Show only first row Show all	>Potri.011G071400.1 pacid=42781827 polypeptide=Potri.011G071400.1.p locus=Potri.011G071400 ID=Potri.011G071400.1.v4.1 annot-version=v4.1 ATGGCCACCGCTGCTATATTTTCTTCTCTAAGGCGGCGAAGATCGCCGTCTTTAGAAGCTTTCTTGGCGCCGGTTGATTTAACCGATGTGGCTCTTGTAC AGACTCTTGTATCAGTATCAACAGAGCTTGTGTCTTGTTTCTCAGGGAAGTCACTCTTCTTTCAAAGAAAGAATTCTCGTTCCTTAATCCGTAAAATTGA AGTCTTTGTTGTTTTATTGGAGTATTTGAGGGACTCGGGGGCTGGTTCTGCTTTATCCCCCCCCACAATTGTTTGTTTTAAAGAACTTTATTTGTTGCTC TACCGCTCAAAGATATTGCTTGATTGTTGTGTGCAATCCAGTAAATTATGGTTGTTGCTTCAAAACCATACAATTTCGGGACATTTTCATGATTTGAATC AGGAAATATCTACCCTTTTGGATGTATTTCCGTTAGATGATGTTGAATTGAGTGAAGATGTTAGGGAACAGATTGATCTCATGCATAAACAATCAAGGAA GGCGACTTTATTTATTGACAAGGAGGAGGAGGATTTGAGGGTTAGTTTCTTTTCGTTTCTTGATGAGTTTGAGAAAGGGAAGATTCCTAACATGGTGGAT TTGAGGATGTTTTTTGTGGAAGGTTTGGGGATTAAAGATGCTAAGAGTTCTAGGGCGGAGATTGAGTTCTTGGAGGAGCAAATTGTCAATCACGAGGGAG ATATTGAGCCCACAGCTTCGGTGCTTAATGGGTTCGTTGCAATTGCTCGCTATTGTAGGTTTTTGCTTTATGGGTTTGAGGAAAATGAGGTGGAGTTGCA AATTGGGAATCAGAAGAAGCTGAGAAAAGGGTTGATTAGCCAAGAGATTGCAGAGACTTTTATTACAATCCCAAAGGATTTTTGCTGTCCAATATCGTTG GATTTGATGCGAGATCCAGTGATTATTTCAACAGGGCAGACATATGATCGGAGTCTGATCTCTAGGTGGATGGAGGAAGGGCACTGTACTTGCCCCAAGA CTGGGCAGATGCTCATGAACACCCGCCTTGTTCCAAATCGGGCTTTGAGGAATCTGATCGTGCAATGGTGTACTGCTCATGGAATCCCTTATGACCCTCC AGAAAATACAGATTCATTAGTAGAGGCTTTTGCAGCAGCTATGCCTTCCAAAGCTGCAATTGAAGCCAACAGAGCAACAGCAACACTTCTTATTCATAAG CTAGCAAGCGGTTCGCAACATGCAAAGACCGTAGCTGCTCGTGGGATACGTTTGTTGGCGAAATCAGGAAGAGAAAACCGCGCTTTCATTGCAGAAGCTG GTGCAATCCCCCACCTTCGTAATCTGCTGTCTTCTACAAACTCTGTCGCACAAGAGAATTCTGTTACAGCAATACTCAATTTATCCATCCATGATAAGAA TAAAAGCCAAATTATGGATGAAACGGGGTGTCTGGGATCGATTGTTGGAGTATTGAGATTTGGACTCACAACAGAGGCAAGAGAAAACGCAGCAGCGACA TTATTTAGCCTGTCAGCAGTTCATGACTACAAGAAGAGAATAGCAGATGAGGAAGGGGCAGTTGAAGCCTTGGCTGGTCTGTTGAGAGCAGGAACACCAC GAGGGAAGAAGGATGCTGTCACAGCGTTATTTAATCTGTCAACTCATACAGAGAACTGTTTGAGAATGATAGAAGCAGGTGCAGTTACTGCACTAGTTGG GGCTTTGGGAAATGAAGGGGTTGCAGAGGAAGCAGCTGGTGCACTGGCTTTGATTGTGAGGCAGCCAATTGGGGCTAAGGCTGTAGGGGGAGAAGAAATG GCCGTGGCTGGGTTAATAGGAATGATGCGTTGTGGAACACCAAGAGGAAAAGAAAATGCTGTTGCAGCACTGCTTGAGTTATGCCGGAGTGGTGGAACAG TTGCCACTGAGAAAGTGCTCAAGGCACCTGCATTGTGGGGTTTACTTCAGAGTCTACTGTTCACAGGCACAAAGCGAGCAAGAAGGAAGGCAGCATCACT TGCCCGAGTGTTTCAGAGGTGTGAGAATTATTCCTTGCATTTTGGTGGATTAGGTGCTGGATATGCATTTGCTGGAAACTCTGCTCCGAATAGGGATTCA AGTTTTGTCAACGAAGTGTCAGTGCCCGTGTCCATATCAGTGCCTGTTCTATAG
AA sequence Show only first row Show all	>Potri.011G071400.1 pacid=42781827 polypeptide=Potri.011G071400.1.p locus=Potri.011G071400 ID=Potri.011G071400.1.v4.1 annot-version=v4.1 MATAAIFSSLRRRRSPSLEAFLAPVDLTDVALVQTLVSVSTELVSCFSGKSLFFQRKNSRSLIRKIEVFVVLLEYLRDSGAGSALSPPTIVCFKELYLLL YRSKILLDCCVQSSKLWLLLQNHTISGHFHDLNQEISTLLDVFPLDDVELSEDVREQIDLMHKQSRKATLFIDKEEEDLRVSFFSFLDEFEKGKIPNMVD LRMFFVEGLGIKDAKSSRAEIEFLEEQIVNHEGDIEPTASVLNGFVAIARYCRFLLYGFEENEVELQIGNQKKLRKGLISQEIAETFITIPKDFCCPISL DLMRDPVIISTGQTYDRSLISRWMEEGHCTCPKTGQMLMNTRLVPNRALRNLIVQWCTAHGIPYDPPENTDSLVEAFAAAMPSKAAIEANRATATLLIHK LASGSQHAKTVAARGIRLLAKSGRENRAFIAEAGAIPHLRNLLSSTNSVAQENSVTAILNLSIHDKNKSQIMDETGCLGSIVGVLRFGLTTEARENAAAT LFSLSAVHDYKKRIADEEGAVEALAGLLRAGTPRGKKDAVTALFNLSTHTENCLRMIEAGAVTALVGALGNEGVAEEAAGALALIVRQPIGAKAVGGEEM AVAGLIGMMRCGTPRGKENAVAALLELCRSGGTVATEKVLKAPALWGLLQSLLFTGTKRARRKAASLARVFQRCENYSLHFGGLGAGYAFAGNSAPNRDS SFVNEVSVPVSISVPVL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G29340		ATPUB17, PUB17	ARABIDOPSIS THALIANA PLANT U-B...		Potri.011G071400 [exp]	0	1
AT5G48380		BIR1	BAK1-interacting receptor-like...		Potri.010G177900 [exp]	2.00	0.8489
AT3G20770	EIL	AtEIN3, EIN3	ETHYLENE-INSENSITIVE3, Ethylen...		Potri.009G159200 [exp]	4.47	0.8538	EIN3A,EIN3.2
AT1G29340		ATPUB17, PUB17	ARABIDOPSIS THALIANA PLANT U-B...		Potri.004G061800 [exp]	5.91	0.8189
AT5G42050			DCD (Development and Cell Deat...		Potri.001G088800 [exp]	6.92	0.7889
					Potri.006G063600 [exp]	8.30	0.8382
AT2G33580			Protein kinase superfamily pro...		Potri.005G259600 [exp]	15.55	0.7895
AT2G46080			unknown protein		Potri.008G085600 [exp]	16.00	0.8307
AT1G34190	NAC	ANAC017	NAC domain containing protein ...		Potri.005G200100 [exp]	22.02	0.8282
AT2G27580			A20/AN1-like zinc finger famil...		Potri.009G144100 [exp]	22.71	0.7667
AT4G13980	HSF	AT-HSFA5	HEAT SHOCK TRANSCRIPTION FACTO...		Potri.017G059600 [exp]	23.45	0.8084	Pt-HSFA5.2

Compare expression of checked genes

Potri.011G071400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.