Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29800 745 / 0 RING/FYVE/PHD-type zinc finger family protein (.1.2) AT3G43230 402 / 4e-136 RING/FYVE/PHD-type zinc finger family protein (.1) AT1G20110 59 / 7e-09 RING/FYVE/PHD zinc finger superfamily protein (.1) AT1G61690 57 / 4e-08 phosphoinositide binding (.1) AT3G14270 49 / 1e-05 FAB1B FORMS APLOID AND BINUCLEATE CELLS 1B, phosphatidylinositol-4-phosphate 5-kinase family protein (.1) AT4G33240 48 / 2e-05 FAB1A FORMS APLOID AND BINUCLEATE CELLS 1A, 1-phosphatidylinositol-4-phosphate 5-kinases;zinc ion binding;1-phosphatidylinositol-3-phosphate 5-kinases (.1.2.3) AT3G47660 45 / 0.0001 Regulator of chromosome condensation (RCC1) family protein (.1) AT1G69710 43 / 0.0005 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT5G42140 42 / 0.001 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G062500 [exp] 912 / 0 AT1G29800 729 / 0.0 RING/FYVE/PHD-type zinc finger family protein (.1.2) Potri.011G106700 [exp] 703 / 0 AT1G29800 703 / 0.0 RING/FYVE/PHD-type zinc finger family protein (.1.2) Potri.006G135800 [exp] 396 / 4e-134 AT3G43230 649 / 0.0 RING/FYVE/PHD-type zinc finger family protein (.1) Potri.018G064200 [exp] 391 / 1e-131 AT3G43230 649 / 0.0 RING/FYVE/PHD-type zinc finger family protein (.1) Potri.005G242700 [exp] 64 / 2e-10 AT1G20110 555 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.002G018900 [exp] 59 / 4e-09 AT1G20110 566 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.011G032200 [exp] 58 / 1e-08 AT1G61690 773 / 0.0 phosphoinositide binding (.1) Potri.004G030500 [exp] 52 / 1e-06 AT1G61690 634 / 0.0 phosphoinositide binding (.1) Potri.001G163200 [exp] 50 / 4e-06 AT3G14270 2134 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1B, phosphatidylinositol-4-phosphate 5-kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029271 [exp] 726 / 0 AT1G29800 713 / 0.0 RING/FYVE/PHD-type zinc finger family protein (.1.2) Lus10007320 [exp] 724 / 0 AT1G29800 709 / 0.0 RING/FYVE/PHD-type zinc finger family protein (.1.2) Lus10027659 [exp] 389 / 6e-131 AT3G43230 654 / 0.0 RING/FYVE/PHD-type zinc finger family protein (.1) Lus10039922 [exp] 384 / 6e-129 AT3G43230 661 / 0.0 RING/FYVE/PHD-type zinc finger family protein (.1) Lus10017277 [exp] 63 / 3e-10 AT1G20110 654 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10013571 [exp] 61 / 2e-09 AT1G20110 650 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10007623 [exp] 54 / 1e-07 AT1G61690 354 / 6e-113 phosphoinositide binding (.1) Lus10018391 [exp] 55 / 2e-07 AT1G61690 838 / 0.0 phosphoinositide binding (.1) Lus10038129 [exp] 49 / 1e-05 AT3G14270 1144 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1B, phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Lus10005173 [exp] 48 / 2e-05 AT4G33240 1063 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1A, 1-phosphatidylinositol-4-phosphate 5-kinases;zinc ion binding;1-phosphatidylinositol-3-phosphate 5-kinases (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [poplar] [flax] zf-FYVE-PHD PF01363 [poplar] [flax] FYVE FYVE zinc finger CL0390 [poplar] [flax] PF04366 [poplar] [flax] Ysc84 Las17-binding protein actin regulator
Representative CDS sequence Show only first row Show all	>Potri.011G071900.1 pacid=42781892 polypeptide=Potri.011G071900.1.p locus=Potri.011G071900 ID=Potri.011G071900.1.v4.1 annot-version=v4.1 ATGGTGGACAACCCTGCAAATTCCGGAAATACCCACAATCTGGATTCTAGGGTTTCTGATTTCCATCGTCATACCAGCTCTCCCCCATCGGGTAATGGGG GATTAGGGAGCCAAACAATGATTAGACCTGAAAATTGTGGTACTGGGTTATGTGGAGTCTCTGAGGATGGGAATGATGAGAAGAGAGAAGGAACAAAAGC TACCCATCAAAAGTTTAGGAATTACTTTTATTATGACATGCCCCTTTATGAAGAAACTGGAGCTTGGATACCGGTTTCTGTCCCGCCCATGATAGAAAGC GATTGTGAAGAGTGGGCGGATAGAGGTTTTCACTTCAATGGTGGTTATTTTCCTGAAGGTGATATGGGGTGGAGTCGGTATATTGGAGAAGACAATGAGT TGACTATGTGGGATGTGATAGTAGAAATGGTGCTTGCAGCTCGTGGAAAAGTGAATGCAATTGCTTCTGGTGATTTACAGAGGTGTGGGATTTCGTGGCT ATCCAGCCATTTACTTGAGCAAGCTTGGCAAGATATGGCTCGGACACTCAATGAAGCTAATTTTGGTAACGTGGCTGAAATTCTTGAAGCGGAGCCTCCT AAATGGTTACCTGATAGCAATGCTTCTGCTTGTATGCTTTGTAGTGTGCGGTTTCATCCGATTATGTGCTCCAGGCATCACTGCAGGTTCTGTGGAGGAA TATTTTGTGGTGATTGCTCTAAAGGAAGGAGTTTGTTGCCAGTAAGGTTTCATGTCACAGATCCCCTGCGAGTCTGTGATGTATGCTGTGTGCGACTTGA ATCTGTCCAGCCATATTTGATGGACCAAGTAAGCAATGCTGCCCAGCTACCAACCCATGACCTGACAGACCTCAGCACTTTGAGATCGTGGGTTAACTTT CCATGGGGACAGACGATGGGATATGAGATTTATAAAGCAGCAAACACAATTCAAGGTTATAATAAGGTAGGTTATTTGAAACCTGAGAAGTCAATTCCAG ATGCCATCCTACGACAAGCAAAAGGCCTTGCAATAATTACAGTTGTGAAAGTTGGGGTGATGGTCACGTACAATGTTGGAACAGGACTTGTAATTGCTCG CAGAGAAGATGGTTCATGGTCTCCACCTTCTGCCATATCTACACTTGGTGTGGGATGGGGAGCTCAGGCTGGAGGTGAATTGACTGATTTCATAATTGTG TTGAGAACTACTGAAGCAGTCAAGACATTTTGTGGTTATGCACATCTGTCATTAGGTGCTGGTGTAAGTGCAGCCGTTGGCATCACTGGACGTGCATTTG AAGCTGATTTACGGGCTGGTGATGGCGGTTATGCTGCTTGTTATACATACAGCTGCAGTAAAGGAGCGTTTGTTGGATGTTCCCTTGAAGGTAGTGTTGT CGCTACCCGCTCAAAAGAGAATTCCAGATTCTATGGGAGCCAGTCTATATCTGCATCGAATATACTTCTTGGCTCATTGCCCAGACCACCCGCAGCTGCA ATTCTGTATCGTGCACTTGTGGACCTATATCAGAAGCTCGATAGGTGA
AA sequence Show only first row Show all	>Potri.011G071900.1 pacid=42781892 polypeptide=Potri.011G071900.1.p locus=Potri.011G071900 ID=Potri.011G071900.1.v4.1 annot-version=v4.1 MVDNPANSGNTHNLDSRVSDFHRHTSSPPSGNGGLGSQTMIRPENCGTGLCGVSEDGNDEKREGTKATHQKFRNYFYYDMPLYEETGAWIPVSVPPMIES DCEEWADRGFHFNGGYFPEGDMGWSRYIGEDNELTMWDVIVEMVLAARGKVNAIASGDLQRCGISWLSSHLLEQAWQDMARTLNEANFGNVAEILEAEPP KWLPDSNASACMLCSVRFHPIMCSRHHCRFCGGIFCGDCSKGRSLLPVRFHVTDPLRVCDVCCVRLESVQPYLMDQVSNAAQLPTHDLTDLSTLRSWVNF PWGQTMGYEIYKAANTIQGYNKVGYLKPEKSIPDAILRQAKGLAIITVVKVGVMVTYNVGTGLVIARREDGSWSPPSAISTLGVGWGAQAGGELTDFIIV LRTTEAVKTFCGYAHLSLGAGVSAAVGITGRAFEADLRAGDGGYAACYTYSCSKGAFVGCSLEGSVVATRSKENSRFYGSQSISASNILLGSLPRPPAAA ILYRALVDLYQKLDR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G29800			RING/FYVE/PHD-type zinc finger...		Potri.011G071900 [exp]	0	1
AT1G29800			RING/FYVE/PHD-type zinc finger...		Potri.004G062500 [exp]	1.00	0.8983
AT4G27650		PEL1	PELOTA, Eukaryotic release fac...		Potri.005G204500 [exp]	1.73	0.8113	PEL1.2
AT2G44140			Peptidase family C54 protein (...		Potri.007G147100 [exp]	4.47	0.7980
AT4G39140			RING/U-box superfamily protein...		Potri.009G120000 [exp]	4.89	0.7533
AT1G01910			P-loop containing nucleoside t...		Potri.014G078100 [exp]	5.74	0.7428
AT1G79900		ATMBAC2, BAC2	RABIDOPSIS MITOCHONDRIAL BASIC...		Potri.001G182000 [exp]	7.74	0.8191
AT2G25740			ATP-dependent protease La (LON...		Potri.018G046700 [exp]	8.83	0.7217
AT2G02040		NTR1, ATPTR2-B	NITRATE TRANSPORTER 1, ARABIDO...		Potri.010G100200 [exp]	11.61	0.7187	NTR1.3
AT2G36310		NSH1, URH1	nucleoside hydrolase 1, uridin...		Potri.006G083400 [exp]	12.40	0.7322
AT3G51730			saposin B domain-containing pr...		Potri.016G133400 [exp]	13.56	0.7994

Compare expression of checked genes

Potri.011G071900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.