Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18910 405 / 7e-144 ATNLM2, NIP1;2, NLM2 NOD26-LIKE INTRINSIC PROTEIN 2, NOD26-like intrinsic protein 1;2 (.1) AT4G19030 379 / 3e-133 ATNLM1, AT-NLM1, NLM1, NIP1;1 NOD26-LIKE INTRINSIC PROTEIN 1;1, NOD26-like major intrinsic protein 1 (.1) AT5G37810 305 / 2e-104 NIP4;1, NLM4 NOD26-LIKE MIP 4, NOD26-like intrinsic protein 4;1 (.1) AT5G37820 302 / 2e-103 NIP4;2, NLM5 NODULIN- 26-LIKE MAJOR INTRINSIC PROTEIN 5, NOD26-like intrinsic protein 4;2 (.1) AT1G31885 289 / 1e-97 NIP3;1 NOD26-like intrinsic protein 3;1 (.1) AT2G34390 281 / 6e-95 NIP2;1, NLM4 NOD26-LIKE MIP 4, NOD26-like intrinsic protein 2;1 (.1) AT1G80760 224 / 2e-72 NLM7, NIP6;1 NOD26-like intrinsic protein 6;1 (.1) AT4G10380 212 / 1e-67 AtNIP5;1, NIP5;1, NLM6, NLM8 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 5;1 (.1) AT3G06100 166 / 5e-50 NIP7;1, NLM8, NLM6 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 7;1 (.1) AT2G29870 112 / 6e-31 Aquaporin-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G063000 [exp] 479 / 4e-173 AT4G18910 386 / 4e-136 NOD26-LIKE INTRINSIC PROTEIN 2, NOD26-like intrinsic protein 1;2 (.1) Potri.010G112900 [exp] 318 / 1e-109 AT5G37810 332 / 2e-115 NOD26-LIKE MIP 4, NOD26-like intrinsic protein 4;1 (.1) Potri.017G128200 [exp] 305 / 1e-104 AT5G37820 350 / 3e-122 NODULIN- 26-LIKE MAJOR INTRINSIC PROTEIN 5, NOD26-like intrinsic protein 4;2 (.1) Potri.017G083300 [exp] 238 / 4e-78 AT4G18910 229 / 2e-74 NOD26-LIKE INTRINSIC PROTEIN 2, NOD26-like intrinsic protein 1;2 (.1) Potri.002G097000 [exp] 234 / 1e-76 AT4G18910 229 / 3e-74 NOD26-LIKE INTRINSIC PROTEIN 2, NOD26-like intrinsic protein 1;2 (.1) Potri.001G046800 [exp] 218 / 4e-70 AT1G80760 371 / 1e-129 NOD26-like intrinsic protein 6;1 (.1) Potri.001G455000 [exp] 213 / 3e-68 AT4G10380 447 / 7e-160 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 5;1 (.1) Potri.003G180900 [exp] 213 / 5e-68 AT1G80760 370 / 2e-129 NOD26-like intrinsic protein 6;1 (.1) Potri.011G146900 [exp] 212 / 1e-67 AT4G10380 450 / 4e-161 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 5;1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029274 [exp] 454 / 3e-163 AT4G18910 382 / 6e-135 NOD26-LIKE INTRINSIC PROTEIN 2, NOD26-like intrinsic protein 1;2 (.1) Lus10007322 [exp] 328 / 5e-115 AT4G18910 276 / 2e-94 NOD26-LIKE INTRINSIC PROTEIN 2, NOD26-like intrinsic protein 1;2 (.1) Lus10035999 [exp] 307 / 2e-105 AT5G37810 343 / 9e-120 NOD26-LIKE MIP 4, NOD26-like intrinsic protein 4;1 (.1) Lus10024066 [exp] 223 / 1e-71 AT1G80760 416 / 2e-147 NOD26-like intrinsic protein 6;1 (.1) Lus10020929 [exp] 222 / 2e-71 AT4G19030 219 / 6e-70 NOD26-LIKE INTRINSIC PROTEIN 1;1, NOD26-like major intrinsic protein 1 (.1) Lus10033268 [exp] 213 / 6e-68 AT4G10380 449 / 1e-160 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 5;1 (.1) Lus10010153 [exp] 213 / 6e-68 AT4G10380 450 / 6e-161 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 5;1 (.1) Lus10017358 [exp] 212 / 1e-67 AT4G10380 446 / 2e-159 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 5;1 (.1) Lus10025744 [exp] 210 / 5e-67 AT5G37820 207 / 6e-66 NODULIN- 26-LIKE MAJOR INTRINSIC PROTEIN 5, NOD26-like intrinsic protein 4;2 (.1) Lus10035918 [exp] 209 / 2e-66 AT5G37820 206 / 2e-65 NODULIN- 26-LIKE MAJOR INTRINSIC PROTEIN 5, NOD26-like intrinsic protein 4;2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00230 [poplar] [flax] MIP Major intrinsic protein
Representative CDS sequence Show only first row Show all	>Potri.011G072100.1 pacid=42781504 polypeptide=Potri.011G072100.1.p locus=Potri.011G072100 ID=Potri.011G072100.1.v4.1 annot-version=v4.1 ATGGCTGATATCGATGGGACTGGTAGCAATGGCAACCATGGGGGGGTTGTTTTGGATATTAAAGATGATCATCCTCCAACCAGCTCCAACTTAACCAAGG AAGATTCCGACTTGTATTTCTCTGTGCCGTTCATGCAAAAGTTGGTGGCTGAGATAGTCGGCACATACTTCTTGATATTTGCCGGTTGCTCATCGGTGGC CGTGAATTTGAACTTTGAGAAGGTTGTGACACTTCCAGGAATATCAATAGTTTGGGGATTGGCTGTGATGGTCTTGGTTTACTCTCTTGGTCATATCTCT GGTGCCCATTTCAACCCTGCTGTCACCCTTGCCTTCGCCACTTGCAAGAGATTTCCATGGAAACAGGTGCCGGCTTACATATCATGTCAAGTCATTGGGT CAACTCTAGCAGCCGGGACAATCCGATTAATTTTTCAGGGCAAGCAAGATCACTTCACAGGAACAATGCCGGCAGGATCCGATCTGCAGTCCTTTGTTGT TGAGTTTATAATCACATTCTACCTCATGTTCATCATATCCGGTGTCGCCACCGATAACAGAGCTATTGGTGAGCTTGCTGGACTTGCTGTTGGTTCCACC GTGCTGCTCAACGTGATGTTTGCAGGGCCAATATCAGGGGCGTCGATGAACCCTGCAAGGAGCTTGGGACCTGCAATGGTGTCGCACGAATACAGAGGCA TATGGATTTACGTAGTGTCACCCATCCTTGGAGCTCAGGCTGGTGCATGGGTGTATAATTTGATCAGGTACACAGACAAGCCTCTGCGCGAGATCACCAA AAGTGCATCATTCCTCCAGAGCAAAGGGCGTTTCTGA
AA sequence Show only first row Show all	>Potri.011G072100.1 pacid=42781504 polypeptide=Potri.011G072100.1.p locus=Potri.011G072100 ID=Potri.011G072100.1.v4.1 annot-version=v4.1 MADIDGTGSNGNHGGVVLDIKDDHPPTSSNLTKEDSDLYFSVPFMQKLVAEIVGTYFLIFAGCSSVAVNLNFEKVVTLPGISIVWGLAVMVLVYSLGHIS GAHFNPAVTLAFATCKRFPWKQVPAYISCQVIGSTLAAGTIRLIFQGKQDHFTGTMPAGSDLQSFVVEFIITFYLMFIISGVATDNRAIGELAGLAVGST VLLNVMFAGPISGASMNPARSLGPAMVSHEYRGIWIYVVSPILGAQAGAWVYNLIRYTDKPLREITKSASFLQSKGRF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G18910		ATNLM2, NIP1;2,...	NOD26-LIKE INTRINSIC PROTEIN 2...		Potri.011G072100 [exp]	0	1
AT2G19570		DESZ, AT-CDA1, ...	cytidine deaminase 1 (.1)		Potri.018G066400 [exp]	8.54	0.7814	CDA1.2
AT1G29160	DOF	AtDof1. 5	Dof-type zinc finger DNA-bindi...		Potri.011G065900 [exp]	12.00	0.7419
AT4G08290			nodulin MtN21 /EamA-like trans...		Potri.005G176100 [exp]	15.65	0.7350
AT1G10240	FAR1_related	FRS11	FAR1-related sequence 11 (.1)		Potri.008G108800 [exp]	21.16	0.7058
AT3G22550			Protein of unknown function (D...		Potri.002G050800 [exp]	24.69	0.7124
AT3G57520		RS2, ATSIP2	raffinose synthase 2, seed imb...		Potri.006G052800 [exp]	26.17	0.7509
AT3G03720		CAT4	cationic amino acid transporte...		Potri.019G039600 [exp]	30.98	0.7082
AT3G22200		HER1, GABA-T, P...	POLLEN-PISTIL INCOMPATIBILITY ...		Potri.016G018500 [exp]	35.87	0.6240
AT3G62860			alpha/beta-Hydrolases superfam...		Potri.014G129000 [exp]	39.00	0.7075
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Potri.015G065700 [exp]	40.59	0.6410

Compare expression of checked genes

Potri.011G072100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.