Plant FIBer expression Database

Potri.011G072200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G29760 382 / 3e-127 Putative adipose-regulatory protein (Seipin) (.1)
AT2G34380 341 / 2e-111 Putative adipose-regulatory protein (Seipin) (.1)
AT5G16460 155 / 2e-42 Putative adipose-regulatory protein (Seipin) (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G085850
[exp]
166 / 9e-46 AT5G16460 269 / 5e-87 Putative adipose-regulatory protein (Seipin) (.1)
Potri.003G025975
[exp]
59 / 1e-10 AT1G29760 60 / 5e-12 Putative adipose-regulatory protein (Seipin) (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10007323
[exp]
443 / 2e-153 AT1G29760 355 / 1e-119 Putative adipose-regulatory protein (Seipin) (.1)
Lus10033273
[exp]
233 / 6e-71 AT1G29760 228 / 5e-69 Putative adipose-regulatory protein (Seipin) (.1)
Lus10034735
[exp]
225 / 1e-67 AT1G29760 231 / 3e-70 Putative adipose-regulatory protein (Seipin) (.1)
Lus10026836
[exp]
145 / 2e-38 AT5G16460 282 / 3e-92 Putative adipose-regulatory protein (Seipin) (.1)
Lus10020213
[exp]
142 / 5e-37 AT5G16460 285 / 4e-93 Putative adipose-regulatory protein (Seipin) (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF06775 Seipin Putative adipose-regulatory protein (Seipin)
Representative CDS sequence
>Potri.011G072200.1 pacid=42781075 polypeptide=Potri.011G072200.1.p locus=Potri.011G072200 ID=Potri.011G072200.1.v4.1 annot-version=v4.1
ATGGAACCCCCAAATCAGAACGACGACGTTGGTTTCTTCTTCGACGCGCTCGATGACTTCCCCTTTCACGATTGCATAGTCACCGCCCAATCAGCTCATT
CCACCTCAACCTCCGCTCTCTCCGATCACTCGCCGGATTCCCCTTTGATCGGTTCAGATGCCTTAGTAATTGACGACCCCGGAAAGAGGAGGAGAAAGAA
CAGGCTTAAAAATTATCTCGATTTGAAGGGAAATTGGAGGAATTTGGATGGCGCTGAGTCAACTCGGTCGATTTCCGACCGAGTTGGCCCTCGACGAGCT
GATTCATCTGCGGTGGGAGGTGTTGGGGAGGAGGAGAAGAAGGAAGAATCGATGGTGACGAGGGCGAATGACGACCGATTTGGTGACCCGGTAGACTCAG
CGGGTGAACTCGATGAGTCAACTCGGCGAGCTTACTCATCTGCGGTGGGAGGTGTCGGGGAGGAGGAGAAGAAGGAGGAATCGACGGTGACTACGGCGAT
TGACGACCGAGTTGGTGACTCGGTAGGCTCAGCGGGTGAACTCGATGAGTCGACAAATTTGCTTTTGTTCGTAGCTGGGTTGGTGATTAAGGCAATTGGA
TTCCAATTAAATTTGTTAGTTTATTTTGTCACATTTCCCTTGTGGATTTTGTATTGTTTTTATATGCTAGTTGTGGATCCATTTGGAGCTATAAGACGGG
GTAGAGGGTTTATTGTCCGGAAGTTGGTTTCTTTATGGAATTTGGTTGGTGGGTTTTTTGGTTCTTTTATAGATGATTGGTTAAAGGAACATAAAACAAT
ATGGAGCCTTTTGATGCAATTTGGGTGGGGCTTGTTTTGGTCATGCTATGTTTGTGTCATTTTGTGTGGATTATTGGTGTTCTCGGTTATGCTTAGTGGG
GTTTTAATGAGATATTTGGTGGAGGAACCGATAAAAATAAGGCAGGATTTGATTTTTGATTATACGAAAGACAATCCAGTTGCATATGTGCCCATACAAT
CTTGTGGTGGTGTTGCTTGTTGTGAAGAGAATATTGGAGATTTCAAGAGCTTAAATACTCGGGTTATACCGCCTAATCACAAGTTGCAAGTTTCTGTTTT
GTTGACAATGCCAGAGTCAGAGTACAACAGAAATCTTGGGGTTTTTCAGATCCGTGCAGACTTTCTCTCTGCTGATGGGAAAACCCTTGCCAGCAAAAGC
CATCCATCCATTTTAAAATTCAAAAGTGAGCCTATCCGCTTTTTATTGACTTTTCTTAAGGCTGCCCCTCTTGTTGCTGGCTACATATCTGAGTCCCAGA
CTCTGGCATTGAAGATAAAAGGTTTTACGGAACGGGACGTGCCTACTTCCTGCTTGAAGGTGATAATTGGACATAGAGCTGAATACAGACCTGGAGCTGG
TATCCCTGAAATATATGATGCATCCATCGTACTTGAGTCGGAACTTCCTCTTTTAAAAAGGATTATATGGTATTGGAAGAAAACCATATTCATATGGATC
TGCATGGTTTTATTTATGATGGAGTTGCTGTTTGCTCTGATATGTTGTAGGTCTGTTATTATTCCAAGAGCAATGCTGAGAGATGGTTCTGCTATCAACA
ATAGTACTCCAATCGACGCCCCTGCACAAAGTTGA
AA sequence
>Potri.011G072200.1 pacid=42781075 polypeptide=Potri.011G072200.1.p locus=Potri.011G072200 ID=Potri.011G072200.1.v4.1 annot-version=v4.1
MEPPNQNDDVGFFFDALDDFPFHDCIVTAQSAHSTSTSALSDHSPDSPLIGSDALVIDDPGKRRRKNRLKNYLDLKGNWRNLDGAESTRSISDRVGPRRA
DSSAVGGVGEEEKKEESMVTRANDDRFGDPVDSAGELDESTRRAYSSAVGGVGEEEKKEESTVTTAIDDRVGDSVGSAGELDESTNLLLFVAGLVIKAIG
FQLNLLVYFVTFPLWILYCFYMLVVDPFGAIRRGRGFIVRKLVSLWNLVGGFFGSFIDDWLKEHKTIWSLLMQFGWGLFWSCYVCVILCGLLVFSVMLSG
VLMRYLVEEPIKIRQDLIFDYTKDNPVAYVPIQSCGGVACCEENIGDFKSLNTRVIPPNHKLQVSVLLTMPESEYNRNLGVFQIRADFLSADGKTLASKS
HPSILKFKSEPIRFLLTFLKAAPLVAGYISESQTLALKIKGFTERDVPTSCLKVIIGHRAEYRPGAGIPEIYDASIVLESELPLLKRIIWYWKKTIFIWI
CMVLFMMELLFALICCRSVIIPRAMLRDGSAINNSTPIDAPAQS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G29760 Putative adipose-regulatory pr... Potri.011G072200
[exp]
0 1
AT4G13630 Protein of unknown function, D... Potri.002G242900
[exp]
2.00 0.8782
AT2G31260 ATAPG9, APG9 autophagy 9 (APG9) (.1) Potri.002G039900
[exp]
2.23 0.9067 APG9.1
AT1G13450 Trihelix GT-1 GT-1, Homeodomain-like superfa... Potri.008G179700
[exp]
4.24 0.8259
AT2G02800 Kin2, APK2B protein kinase 2B (.1.2) Potri.010G093700
[exp]
4.24 0.8731 APK2.1
AT4G12570 UPL5 ubiquitin protein ligase 5 (.1... Potri.006G011701
[exp]
8.00 0.8416
AT4G01810 Sec23/Sec24 protein transport ... Potri.002G187100
[exp]
9.16 0.8717
AT4G01280 MYB Homeodomain-like superfamily p... Potri.002G163100
[exp]
9.48 0.8414
AT2G27600 ATSKD1, VPS4, S... VACUOLAR PROTEIN SORTING 4, SU... Potri.010G237100
[exp]
9.74 0.8251
AT4G24290 MAC/Perforin domain-containing... Potri.003G006500
[exp]
9.89 0.8303
AT2G26920 Ubiquitin-associated/translati... Potri.009G021900
[exp]
10.39 0.8359

Potri.011G072200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.