Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29750 1025 / 0 RKF1 receptor-like kinase in flowers 1 (.1.2) AT3G14840 946 / 0 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G07650 903 / 0 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G53430 876 / 0 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G53440 874 / 0 Leucine-rich repeat transmembrane protein kinase (.1) AT1G53420 872 / 0 Leucine-rich repeat transmembrane protein kinase (.1) AT1G29720 850 / 0 Leucine-rich repeat transmembrane protein kinase (.1) AT1G29740 846 / 0 Leucine-rich repeat transmembrane protein kinase (.1) AT1G29730 841 / 0 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56130 678 / 0 Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G063200 [exp] 1768 / 0 AT1G29750 1019 / 0.0 receptor-like kinase in flowers 1 (.1.2) Potri.011G072566 [exp] 1137 / 0 AT1G29750 1210 / 0.0 receptor-like kinase in flowers 1 (.1.2) Potri.004G063500 [exp] 1117 / 0 AT1G29750 1182 / 0.0 receptor-like kinase in flowers 1 (.1.2) Potri.001G385200 [exp] 999 / 0 AT3G14840 1171 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Potri.011G072866 [exp] 988 / 0 AT1G29740 1024 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G072741 [exp] 981 / 0 AT1G29740 1014 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G072966 [exp] 977 / 0 AT1G29740 1006 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G073700 [exp] 975 / 0 AT1G29740 1012 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G075400 [exp] 974 / 0 AT1G29740 1012 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015239 [exp] 1072 / 0 AT1G29750 1189 / 0.0 receptor-like kinase in flowers 1 (.1.2) Lus10031374 [exp] 904 / 0 AT1G07650 1221 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Lus10005550 [exp] 856 / 0 AT1G53440 1223 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10041937 [exp] 776 / 0 AT1G53440 1138 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10010951 [exp] 771 / 0 AT1G07650 979 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Lus10038153 [exp] 767 / 0 AT1G53440 1046 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10005418 [exp] 742 / 0 AT1G29750 800 / 0.0 receptor-like kinase in flowers 1 (.1.2) Lus10042505 [exp] 730 / 0 AT1G53440 1013 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10031199 [exp] 679 / 0 AT1G56130 1261 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10042460 [exp] 324 / 1e-101 AT1G16670 536 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0202 [poplar] [flax] GBD PF11721 [poplar] [flax] Malectin Malectin domain
Representative CDS sequence Show only first row Show all	>Potri.011G072300.1 pacid=42781182 polypeptide=Potri.011G072300.1.p locus=Potri.011G072300 ID=Potri.011G072300.1.v4.1 annot-version=v4.1 ATGTTCTTTTCCCTCAGGTATGCATTCCTCATATCAATTCTAGCTTTGAGTTGCTTGGAGACAGAAAGATTGGCTGCTGCTGAGCTTCCTCAAGATGAGG TGGATGCTTTAAACCTAATTACCAAAAAGATGGGGGCCAACGGCTGGAATTTCAATGCTGATTCTTGTGGAGAATATCTTCCTCGAGTCCGGCCAACAGA TCCAGAGAGGAACATTAGTTGTAACTGCAGTGAGAACAACACCTGCCATATTGTTTCCCTGAAGTTCAAGCGTTTTAGTCTTGCAGGAGAACTTCCACCT GAACTCATTCAGCTTCCTTATCTTGAAAGCATTGATCTTTCTTACAATTACCTTAATGGGTCTATACCAAGTGAATGGGCTCCATTGCAGCTGAAATCGA TTGCTCTTCTTGCAAATAGATTATCAGGGAATATTCCAAGCTATCTGGGGAACTTAACCAGTCTAACATACTTGGACCTTGAGTTAAATCAGTTTTCTGG AATGATCCCGCACGAGCTTGGGAAGTTAGTTAACCTTAAAACTTTGATTCTATCCTCCAATAAACTGGACGGAAATTTGCCTATGGAACTTAGTAAGCTG AGAAACCTGACTGACTTTCGGATAAATGACAACAACTTTAACGGGAGTATACCAGATTTTGTAGAAAACTGGAAGCAACTTAAAAGACTAGAAATGGTAG CTAGCGGACTGGAAGGACCCATTCCATCCTCCATCTCTGCTTTGGAAACATTAACAGACTTGAGGATCACTGATATAACCAGCACAGATCAGTCATTTCC TGATCTTAGTAACATAACAGGCCTCACAAGACTGTTGTTGAGGGGTTGCAATATATCTGGAGAAATTCCTTTATACATATGGGAAATGAGTAAACTGCGA ATTCTGGATCTCAGTTTTAACAAGTTACGCGGGGAGCTTCCCAATGCCATAACCACAGAGACACTGGTATTTATCTTTCTAAGTGGAAACCTTCTCACCG GAAATATACCAATGTTTAGAAAAGGAATGACCGTAGATCTTTCCTATAATAATTTCTCAGAACAAAGCACTGGGCAACCCGCTTGTCAGCAGAGAACGGA TGTAACTCTAAACCTGTTCCGAAGTTCTTCAATGGGAAATGACTTAGGAGGAGCATGCATGGATGATCTCAAATGTGATCAGTACTGGCACTCGTTGTAC ATAAATTGTGGAGGACAAAATGTTCAAATAAATGGCAGCACATATGAAGGAGATGCAGCAGTTAGCGGTGGTGCTGGCTTATTCTATCAGAGTGCGGATG AATGGGGACTTAGCAGCACTGGAGACTTCATGGATGACAACGATTTCCAAAACAGGGCTTACACTGAAAATGTGCCATCATTAAATATTAATGAATTGTA CCAAACAGCACGCATTTCTCCTATTTCACTTACTTATTATCGTCGTTGTTTGGAAAATGGGAATTACACTGTGAGTCTACACTTTGCTGAGATCAGATTC ACAAATGATAATACGTTCAACAGCCTTGGAAGACGGTTATTTGATATCTATATTCAGAATAATCTAGTTGAGAAGGATTTCAATATAGAAGTTCAGGCTG CTGGGGTTGCCAAGCCAGTCACAGAAATACACAATGCTATTGTCACAAATAATATCCTGGAGATCCGCCTATTTTGGGCTGGCAAAGGGACAAGAAGAAT TCCTGTTAGTGGAGTCTACGGTCCCCTCATATCAGCTATATCTGTTGATCCTAACTTCAAACCACGTTTTTCAAGAGAGGAGAAGACAAAAACTGTGCCA ATAATTGTTGGAGTTGTAGTAGGCTTTTGTCTAATATTCTCAGTACTAGCTATCTTTTGGTGGAGATGCTGTTTCAGAATAAATAAAAAAAGACGAAAAG GTCTTGAAGGAATAGAAATCCAAACTGTTTCTTTTACTTTAAAGCAAATTAAAGCTGCCACGGACAATTTTGATCCTGCAAACAAAATTGGAGAAGGTGG ATTTGGACCAGTTTACAAGGGATTGTTACCTGATGGTACTGTGATTGCTGTGAAGCAGCTGTCTTCTAAGTCAAGTCAGGGAAATCGTGAATTTTTGAAT GAGATCGGTGTGATTTCATGCATGCAGCACCCTCATCTTGTAAAACTTCATGGTTGTTGTATTGAAGGAGATCAACTATTGTTAGTATATGAATACATGG AAAACAACAGCCTTTCCCGAGCATTGTTTGGTCCAGAACATCAACTACATTTGGACTGGAAAACAAGGCAGAAGATATGCGTCGGAATTGCCAAAGGTTT AGCTTTTCTACATGAAGAATCAAGGCTTAAGATTGTTCATAGAGACATCAAAGTCACCAATGTTCTCCTCGATAAGGATCTCAATCCTAAAATATCTGAT TTTGGGCTGGCTAAACTTGATGAACGCGAAAAAACTTTCATCAGCACCAGAGTTGCTGGAACTGTAGGATATATGGCACCAGAATATGCATTATGGGGTC GTTTGACATATAAAGCAGATGTTTACAGTTTTGGAATTGTGGCACTGGAGATTGTGAGTGGGAAGTATAACATGAGTTGTGGGCCAGAGAATCAATACTC TTGTCTTCTAGACTGGGCCTGCCATTTAGAACGAAATGGAAACCTAATTGAGCTAGTGGATCGGAAGCTGGGGTCTGAATTCAACAAAGTAGAAGCACAA AGGATGATAAAAGTAGCTCTCTTGTGCGCAAATGCTTCACCATTACTAAGGCCAATCATGTCTGAAGTTGTTAGCATGCTCGAAGGAACTAGGATCATAC CTGAAGTGATCCCTGAACCAATTAGTGAAGATTTAAGGTTCAAGGCCATACGAGGGCATCAGGAACAGACGAGAAGTCTGCGTGAGAGAGGCAATCAGAC CATCTTAGACAGATCCGCTACCAGCAGTTCCTACGTGTGTACAGATGATGATCTATGGGAAACCGATACTGAGTCAAATGTGAGGTCTAACACGAGGAGC AAACAGCATGAAAGCCCGGCTGAGGTTTCAACTTCAGTATTGCCAGTAACAGCCTCTTCCTCGACTTCTGTTTAG
AA sequence Show only first row Show all	>Potri.011G072300.1 pacid=42781182 polypeptide=Potri.011G072300.1.p locus=Potri.011G072300 ID=Potri.011G072300.1.v4.1 annot-version=v4.1 MFFSLRYAFLISILALSCLETERLAAAELPQDEVDALNLITKKMGANGWNFNADSCGEYLPRVRPTDPERNISCNCSENNTCHIVSLKFKRFSLAGELPP ELIQLPYLESIDLSYNYLNGSIPSEWAPLQLKSIALLANRLSGNIPSYLGNLTSLTYLDLELNQFSGMIPHELGKLVNLKTLILSSNKLDGNLPMELSKL RNLTDFRINDNNFNGSIPDFVENWKQLKRLEMVASGLEGPIPSSISALETLTDLRITDITSTDQSFPDLSNITGLTRLLLRGCNISGEIPLYIWEMSKLR ILDLSFNKLRGELPNAITTETLVFIFLSGNLLTGNIPMFRKGMTVDLSYNNFSEQSTGQPACQQRTDVTLNLFRSSSMGNDLGGACMDDLKCDQYWHSLY INCGGQNVQINGSTYEGDAAVSGGAGLFYQSADEWGLSSTGDFMDDNDFQNRAYTENVPSLNINELYQTARISPISLTYYRRCLENGNYTVSLHFAEIRF TNDNTFNSLGRRLFDIYIQNNLVEKDFNIEVQAAGVAKPVTEIHNAIVTNNILEIRLFWAGKGTRRIPVSGVYGPLISAISVDPNFKPRFSREEKTKTVP IIVGVVVGFCLIFSVLAIFWWRCCFRINKKRRKGLEGIEIQTVSFTLKQIKAATDNFDPANKIGEGGFGPVYKGLLPDGTVIAVKQLSSKSSQGNREFLN EIGVISCMQHPHLVKLHGCCIEGDQLLLVYEYMENNSLSRALFGPEHQLHLDWKTRQKICVGIAKGLAFLHEESRLKIVHRDIKVTNVLLDKDLNPKISD FGLAKLDEREKTFISTRVAGTVGYMAPEYALWGRLTYKADVYSFGIVALEIVSGKYNMSCGPENQYSCLLDWACHLERNGNLIELVDRKLGSEFNKVEAQ RMIKVALLCANASPLLRPIMSEVVSMLEGTRIIPEVIPEPISEDLRFKAIRGHQEQTRSLRERGNQTILDRSATSSSYVCTDDDLWETDTESNVRSNTRS KQHESPAEVSTSVLPVTASSSTSV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G29750		RKF1	receptor-like kinase in flower...		Potri.011G072300 [exp]	0	1
AT5G52450			MATE efflux family protein (.1...		Potri.010G116700 [exp]	1.41	0.9245
AT4G02860			Phenazine biosynthesis PhzC/Ph...		Potri.010G175701 [exp]	4.89	0.8938
AT3G14570		ATGSL4, ATGSL04	glucan synthase-like 4 (.1.2)		Potri.011G095100 [exp]	5.65	0.8861	ATGSL04.1
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Potri.002G156800 [exp]	5.74	0.8965
AT2G18370			Bifunctional inhibitor/lipid-t...		Potri.009G025200 [exp]	6.32	0.8906
AT3G14470			NB-ARC domain-containing disea...		Potri.006G271800 [exp]	6.48	0.8892
AT5G11320		YUC4	YUCCA4, Flavin-binding monooxy...		Potri.006G248200 [exp]	8.00	0.8716	Pt-YUC.2
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Potri.002G098300 [exp]	8.12	0.8894
AT5G20320		DCL4, ATDCL4	dicer-like 4 (.1.2)		Potri.006G188800 [exp]	8.12	0.8593	DCL905
AT1G28440		HSL1	HAESA-like 1 (.1)		Potri.017G016600 [exp]	8.83	0.8788

Compare expression of checked genes

Potri.011G072300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.