Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	RPL18.5
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34480 349 / 3e-125 Ribosomal protein L18ae/LX family protein (.1) AT3G14600 347 / 3e-124 Ribosomal protein L18ae/LX family protein (.1) AT1G29965 338 / 6e-121 Ribosomal protein L18ae/LX family protein (.1) AT1G29970 333 / 8e-117 RPL18AA 60S ribosomal protein L18A-1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G063400 [exp] 367 / 5e-132 AT2G34480 345 / 1e-123 Ribosomal protein L18ae/LX family protein (.1) Potri.004G063300 [exp] 367 / 5e-132 AT2G34480 345 / 1e-123 Ribosomal protein L18ae/LX family protein (.1) Potri.002G057600 [exp] 359 / 5e-129 AT2G34480 342 / 3e-122 Ribosomal protein L18ae/LX family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023457 [exp] 350 / 2e-125 AT2G34480 337 / 2e-120 Ribosomal protein L18ae/LX family protein (.1) Lus10019881 [exp] 348 / 9e-125 AT2G34480 337 / 4e-120 Ribosomal protein L18ae/LX family protein (.1) Lus10023454 [exp] 348 / 9e-125 AT2G34480 337 / 4e-120 Ribosomal protein L18ae/LX family protein (.1) Lus10014035 [exp] 351 / 7e-123 AT2G34480 338 / 2e-117 Ribosomal protein L18ae/LX family protein (.1) Lus10040332 [exp] 295 / 3e-104 AT2G34480 290 / 4e-102 Ribosomal protein L18ae/LX family protein (.1) Lus10023456 [exp] 151 / 4e-48 AT2G34480 147 / 1e-46 Ribosomal protein L18ae/LX family protein (.1) Lus10023453 [exp] 116 / 2e-34 AT2G34480 112 / 4e-33 Ribosomal protein L18ae/LX family protein (.1) Lus10028130 [exp] 40 / 0.0002 AT1G29970 150 / 6e-45 60S ribosomal protein L18A-1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01775 [poplar] [flax] Ribosomal_L18A Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A
Representative CDS sequence Show only first row Show all	>Potri.011G072400.1 pacid=42780638 polypeptide=Potri.011G072400.1.p locus=Potri.011G072400 ID=Potri.011G072400.1.v4.1 annot-version=v4.1 ATGGTTACCTTCAGGTTTCACCAGTACCAGGTGGTCGGGAGAGCACTTCCAACACAGAGCGATGAGCATCCTAAGATCTACCGCATGAAGCTTTGGGCAA CTAACGAGGTCCGTGCAAAATCCAAGTTCTGGTACTTCTTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGACAAGTTCTTGCCATCAATGAGATTTT TGAGAAGAATCCTACCACGATCAAGAATTATGGAATATGGCTGCGATACCAGAGCCGAACTGGTTATCACAACATGTACAAGGAATACCGAGACACGACC CTTAATGGTGCTGTTGAACAAATGTACACTGAGATGGCATCTCGCCATAGGGTGAGGTTTCCATGCATCCAAATCATCAAGACAGCTACCATCCCAGCTA AGCTTTGCAAGAGAGAGAGTACCAAGCAGTTCCACAACTCCAAAATCAAATTCCCATTGGTATTCAAGAAGGTTAGACCCCCATCCAGGAAGCTCAAGAC AACATACAAGGCATCCAGGCCCAACCTGTTTATGTGA
AA sequence Show only first row Show all	>Potri.011G072400.1 pacid=42780638 polypeptide=Potri.011G072400.1.p locus=Potri.011G072400 ID=Potri.011G072400.1.v4.1 annot-version=v4.1 MVTFRFHQYQVVGRALPTQSDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLAINEIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTT LNGAVEQMYTEMASRHRVRFPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPSRKLKTTYKASRPNLFM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G34480			Ribosomal protein L18ae/LX fam...		Potri.011G072400 [exp]	0	1	RPL18.5
AT3G13882			Ribosomal protein L34 (.1.2)		Potri.003G041100 [exp]	1.00	0.8746
AT5G51120		PABN1, ATPABN1	polyadenylate-binding protein ...		Potri.015G110800 [exp]	2.64	0.8176
AT5G46160			Ribosomal protein L14p/L23e fa...		Potri.010G022800 [exp]	2.82	0.8366	RPL14.1
AT5G15750			Alpha-L RNA-binding motif/Ribo...		Potri.004G113600 [exp]	4.89	0.8130
AT2G17360			Ribosomal protein S4 (RPS4A) f...		Potri.013G011000 [exp]	5.09	0.8731
AT2G34480			Ribosomal protein L18ae/LX fam...		Potri.004G063400 [exp]	7.74	0.7953
AT5G28060			Ribosomal protein S24e family ...		Potri.013G036100 [exp]	9.21	0.8338	Pt-RPS24.2
AT3G10950			Zinc-binding ribosomal protein...		Potri.002G140100 [exp]	10.67	0.8335
AT1G29250			Alba DNA/RNA-binding protein (...		Potri.006G252000 [exp]	10.72	0.7730
AT5G15750			Alpha-L RNA-binding motif/Ribo...		Potri.017G101200 [exp]	11.53	0.7835

Compare expression of checked genes

Potri.011G072400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.