Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29750 1211 / 0 RKF1 receptor-like kinase in flowers 1 (.1.2) AT1G07650 917 / 0 Leucine-rich repeat transmembrane protein kinase (.1.2) AT3G14840 913 / 0 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G29730 894 / 0 Leucine-rich repeat transmembrane protein kinase (.1) AT1G29740 894 / 0 Leucine-rich repeat transmembrane protein kinase (.1) AT1G29720 873 / 0 Leucine-rich repeat transmembrane protein kinase (.1) AT1G53420 871 / 0 Leucine-rich repeat transmembrane protein kinase (.1) AT1G53440 868 / 0 Leucine-rich repeat transmembrane protein kinase (.1) AT1G53430 860 / 0 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G56140 639 / 0 Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G063500 [exp] 1741 / 0 AT1G29750 1182 / 0.0 receptor-like kinase in flowers 1 (.1.2) Potri.011G072300 [exp] 1146 / 0 AT1G29750 1024 / 0.0 receptor-like kinase in flowers 1 (.1.2) Potri.004G063200 [exp] 1117 / 0 AT1G29750 1019 / 0.0 receptor-like kinase in flowers 1 (.1.2) Potri.001G385200 [exp] 1012 / 0 AT3G14840 1171 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Potri.011G072966 [exp] 988 / 0 AT1G29740 1006 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G072741 [exp] 988 / 0 AT1G29740 1014 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G073700 [exp] 987 / 0 AT1G29740 1012 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G072866 [exp] 981 / 0 AT1G29740 1024 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.004G135500 [exp] 976 / 0 AT1G07650 1324 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015239 [exp] 1433 / 0 AT1G29750 1189 / 0.0 receptor-like kinase in flowers 1 (.1.2) Lus10005418 [exp] 943 / 0 AT1G29750 800 / 0.0 receptor-like kinase in flowers 1 (.1.2) Lus10031374 [exp] 896 / 0 AT1G07650 1221 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Lus10005550 [exp] 842 / 0 AT1G53440 1223 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10041937 [exp] 784 / 0 AT1G53440 1138 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10038153 [exp] 778 / 0 AT1G53440 1046 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10010951 [exp] 739 / 0 AT1G07650 979 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Lus10042505 [exp] 731 / 0 AT1G53440 1013 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10031199 [exp] 671 / 0 AT1G56130 1261 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10026207 [exp] 336 / 9e-106 AT1G16670 541 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0202 [poplar] [flax] GBD PF11721 [poplar] [flax] Malectin Malectin domain
Representative CDS sequence Show only first row Show all	>Potri.011G072566.1 pacid=42781781 polypeptide=Potri.011G072566.1.p locus=Potri.011G072566 ID=Potri.011G072566.1.v4.1 annot-version=v4.1 ATGCTTGCTGGGAAGTTCTTTGTTTTCTTGACTGTTAGTCTTACTAGTTGCTTAGGGTTGCTGGCGTTTTTTGAGGCAAAGCTGGTTCAAGAAGAAGTTG ATGCACTTGAAGAAATTGCACGGACATTGGGCTCTAAATACTGGAAGTTCAATGCTGACACTTGCGAGATTGAATCGGTTGGAGTAACTCAAGTCCCACC AAAGAACGCAGAGCAAAGGATAGATTGTGAATGCAAGAATGGGAACAATACTGATTGTCACGTCACAAGAATGGAGCTCAAAAATTATAATCTTCCTGGA GTGCTTCCGCCTCAACTTGTTAAGCTTCCCCACCTCCGAGTAGTTGATTTTGCGTACAATTACCTGAATGGTACGATACCATTTGAATGGGCTTCAATGC AGTTAACCTCAATCTCTCTTCTCGTAAATCGTTTGTCAGGGGAGATTCCAAAGGAATTGGGAAATATTACCACTCTCACCTACCTGTCCCTTGAAGCGAA CCAAATTTCTGGCATAATCCCCCCTGACCTTGGAAAATTGATCAACTTGCAGACACTGATGCTGTCCTCCAATCGTTTTACTGGAAACTTGCCAGTGTCA TTTTCTGGACTAATAAATCTAACAGATTTTAGGATAAACGATAACAACTTCAGTGGAGCCATTCCTATCTTCATACAGAATTGGAAAAAGCTTGAAAGAT TAGAAATGCATGCAACTGGACTGGAGGGACCTATTCCATCGAACATTTCTCTTTTGAATAATTTAGTTGAGTTGAGAATAAGTGATATAAATGGACCAAC CCAGAGTTTCCCCATGCTCAAGAATATGACAGGCATGATCAGATTAACTCTGAGGAGCTGTAAAATTTTTGGGGAGATCCCTGCATACCTTTGGACAATG AAGAGTTTGGAATTGTTGGATGTCAGTTTCAATAAGTTGGTTGGAAAAATTCCTGCCAGCATAAGTGCAGATCGCCTGCGATTCATCTTTTTAACTAGAA ACTTGCTAAGTGGAGATATATCAGATTCAATCTTGAAGGATGGAAGCAACGTTGATCTGTCATATAATAACTTTGCGTTGCAAAACCCTGGGCAACCTGT TTGTCGAGAAAACATGAATCTAAACCTGAACTTGTTCCGTAGCTCTTCAATGGGAAACAGCTCAAGGCGAGTTCTTCCATGCATGAAGACTTTCCGCTGC CCTAAATATTCAAACTGTTTACATGTTAACAGTGGTGGAAAGGACATAACCATCAATGAAAACAAAACAACCTTGTCATATGAAGGAGATGGACAAGTAG AAGGTGGTGCAGCTAAATATTTTGTAAATGACCAAAGCTTCTGGGGTTTCAGTAGCACCGGGGACTTTATGGATGATTATGATTACCAAAATACTCGTTA TACTGTATCTCTGCAATCATCAACCATCCCTGAATTATACCAAACAGCTCGCATATCCCCAATTTCTCTTACCTATTTCCATTATTGCTTACAAAATGGG AACTACACAGTAAATCTTCACTTTGCAGAGATACAGTTCACTAATGACCACACATATAACAGCTTAGGCAGGCGTATTTTTGACATTTATGTTCAGGAAA GATTGGTTTGGAAAGATTTCAATATTGAAGATGAGGTTGGCAGTGCTGAAAAGCCTTTAGTGAAACAAGTATTGAATGTCAATGTGACTAATAATATGTT GGAGATCAGATTCTATTTTGCCGGAAAAGGGACAACAAGGATTCCTGATAGGGGAGTTTATGGTCCCATCATATCAGCCATCTCTGTATTTTCTGATTTG AAAGTTTGTTCTAGTGGGAAAAAGAAGGGAATTGTTTATGTGGTTGTTGGAGCTGTTGGAGCATCATGCCTGGTTGCCATTATACTGGTAATTCTTTGGT GGAAAGGAAACTTGCCAGGAAAATTGCGCAGGAAAAGAGATGTCAAAGGACTTGATTTTCCAAAGGGAACATTTTCTCTGAAGCAAATTAGAGCTGCCAC AAATGACTTTGATGCTTCTAATAAGATTGGAGAAGGTGGTTTTGGTCCTGTATACAAGGGTCAATTACCTGATGGTACTGTTATAGCAGTGAAGCAACTT TCATCAAAATCACGGCAAGGAAATCGTGAATTCTTAAATGAGATGGGCATGATTTCATGTTTGCAGCATCCGAATCTTGTCAAGCTGCATGGATGTTGCA TTGAAAGTGACCAGTTATTATTGGTTTATGAGTACATGGAAAATAATAGTCTTGCACGTGCTCTGTTTCGTCATGAAAACAATCAGCTTAATCTGGATTG GCCTACAAGGCTTAAGATCTGTATTGGGATAGCTAGAGGTCTAGCTTTTCTCCATGAAGAATCAAGACTTAAGATCGTTCACAGAGACATCAAAGCTACA AATGTGCTACTTGATGGGAATCTGAATCCTAAAATATCTGATTTTGGATTGGCCAGGCTTGATGAAGAAGAGAAGAGCCACATCAGCACCCGAGTTGCTG GAACTATAGGATATATGGCACCAGAGTATGCACTATGGGGTTACTTGACTGACAAAGCAGATGTTTACAGTTTTGGGGTTGTTGCTTTGGAAATTATTAG TGGGAAGAACAACAATAACTACATGCCAAGCAACAGCAGTTGTGTTTGTCTCTTAGATTGGGCCTGCCATTTGCAACAAAGTGGGAGTTTTATAGAGCTT GTTGATGAGACGTTAGGATCTGAAGTTAACATAGAAGAAGCAGAAACTATGGTTAAAGTAGCTCTCTTGTGTACAAATGCGTCCCCTACACTTAGACCTA CAATGTCTGAGGTAGTGAGCATGCTTGAAGGACGAATGGCTGTTCCTGACACGCGTCCAGAACTGAGTTCATATAATGAAGATTTGAGGTTCAAAGCCAT GAGAGACCTCCGTCAGCACGAGCAAAGTCATAGATTCAGTGGGAGCCAAAGGCAAAAGTCAACCTCTATTCAAACTTTTAGCTCATCATCTATATCTGAG AACAGCAGTTATGAGATAAGCTTAGAACCAAAGCTCTAA
AA sequence Show only first row Show all	>Potri.011G072566.1 pacid=42781781 polypeptide=Potri.011G072566.1.p locus=Potri.011G072566 ID=Potri.011G072566.1.v4.1 annot-version=v4.1 MLAGKFFVFLTVSLTSCLGLLAFFEAKLVQEEVDALEEIARTLGSKYWKFNADTCEIESVGVTQVPPKNAEQRIDCECKNGNNTDCHVTRMELKNYNLPG VLPPQLVKLPHLRVVDFAYNYLNGTIPFEWASMQLTSISLLVNRLSGEIPKELGNITTLTYLSLEANQISGIIPPDLGKLINLQTLMLSSNRFTGNLPVS FSGLINLTDFRINDNNFSGAIPIFIQNWKKLERLEMHATGLEGPIPSNISLLNNLVELRISDINGPTQSFPMLKNMTGMIRLTLRSCKIFGEIPAYLWTM KSLELLDVSFNKLVGKIPASISADRLRFIFLTRNLLSGDISDSILKDGSNVDLSYNNFALQNPGQPVCRENMNLNLNLFRSSSMGNSSRRVLPCMKTFRC PKYSNCLHVNSGGKDITINENKTTLSYEGDGQVEGGAAKYFVNDQSFWGFSSTGDFMDDYDYQNTRYTVSLQSSTIPELYQTARISPISLTYFHYCLQNG NYTVNLHFAEIQFTNDHTYNSLGRRIFDIYVQERLVWKDFNIEDEVGSAEKPLVKQVLNVNVTNNMLEIRFYFAGKGTTRIPDRGVYGPIISAISVFSDL KVCSSGKKKGIVYVVVGAVGASCLVAIILVILWWKGNLPGKLRRKRDVKGLDFPKGTFSLKQIRAATNDFDASNKIGEGGFGPVYKGQLPDGTVIAVKQL SSKSRQGNREFLNEMGMISCLQHPNLVKLHGCCIESDQLLLVYEYMENNSLARALFRHENNQLNLDWPTRLKICIGIARGLAFLHEESRLKIVHRDIKAT NVLLDGNLNPKISDFGLARLDEEEKSHISTRVAGTIGYMAPEYALWGYLTDKADVYSFGVVALEIISGKNNNNYMPSNSSCVCLLDWACHLQQSGSFIEL VDETLGSEVNIEEAETMVKVALLCTNASPTLRPTMSEVVSMLEGRMAVPDTRPELSSYNEDLRFKAMRDLRQHEQSHRFSGSQRQKSTSIQTFSSSSISE NSSYEISLEPKL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G29750		RKF1	receptor-like kinase in flower...		Potri.011G072566 [exp]	0	1
AT2G23740	C2H2ZnF	AtCZS	nucleic acid binding;sequence-...		Potri.005G129800 [exp]	4.12	0.8525
AT5G64320			Pentatricopeptide repeat (PPR)...		Potri.006G015900 [exp]	5.19	0.7960
AT5G56310			Pentatricopeptide repeat (PPR)...		Potri.003G223900 [exp]	8.48	0.8219
AT5G08490		SLG1	SLOW GROWTH 1, Tetratricopepti...		Potri.004G134300 [exp]	8.83	0.8297
AT5G20420		CHR42	chromatin remodeling 42 (.1)		Potri.010G183766 [exp]	10.67	0.8225
AT2G35510		SRO1	similar to RCD one 1 (.1)		Potri.005G149701 [exp]	12.64	0.7849
AT5G06810			Mitochondrial transcription te...		Potri.016G048200 [exp]	15.87	0.7986
AT1G75660		AtXRN3, XRN3	5'-3' exoribonuclease 3 (.1)		Potri.002G024100 [exp]	19.07	0.7908	XRN2.1
AT5G55390		EDM2	ENHANCED DOWNY MILDEW 2 (.1.2)		Potri.001G359900 [exp]	19.49	0.8067
AT3G52140			tetratricopeptide repeat (TPR)...		Potri.001G271200 [exp]	19.79	0.7980

Compare expression of checked genes

Potri.011G072566 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.