Plant FIBer expression Database

Potri.011G072616 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.011G072616.1 pacid=42780689 polypeptide=Potri.011G072616.1.p locus=Potri.011G072616 ID=Potri.011G072616.1.v4.1 annot-version=v4.1
ATGACGAAAGTGTTGCCCCGGCGCTGCCGTGTGTGGGCTGCTGGCTCACTGGTGAGAACGGGGCTGCTGGTGGTCTTCCTTCGCTGCTGTTGTTCGTGGT
TTTTGCTGCTGGAGCTGGGTTGGAGCTGCGGAAGAAGGGAGCTGCTGTGGAGGCTGTTGGGTGGAGCAACCGGGTCTGCTGGAGGAAGACGGTGCTGCTT
CACGGGGAGGGGTCGTCGCTGCTGGAAGAAGAAGAAACCAGAGGGCAAAGGGGAGTGGCCGGTCTCTGTTTGTGTTGCCAGAGAGGGAAGGTCTGGAGCT
GGAGGGGAAAAGCTGGGACGGTGA
AA sequence
>Potri.011G072616.1 pacid=42780689 polypeptide=Potri.011G072616.1.p locus=Potri.011G072616 ID=Potri.011G072616.1.v4.1 annot-version=v4.1
MTKVLPRRCRVWAAGSLVRTGLLVVFLRCCCSWFLLLELGWSCGRRELLWRLLGGATGSAGGRRCCFTGRGRRCWKKKKPEGKGEWPVSVCVAREGRSGA
GGEKLGR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.011G072616
[exp]
0 1
Potri.003G154150
[exp]
1.41 0.9129
AT5G38260 Protein kinase superfamily pro... Potri.015G045000
[exp]
12.00 0.8637
AT1G28310 DOF AtDof1. 4 Dof-type zinc finger DNA-bindi... Potri.011G055600
[exp]
13.22 0.8690
AT4G00150 GRAS ATHAM3, SCL6, L... LOST MERISTEMS 3, ARABIDOPSIS ... Potri.002G144200
[exp]
15.49 0.8522
AT3G59140 ATMRP14, ABCC10 ATP-binding cassette C10, mult... Potri.015G023800
[exp]
16.00 0.8689 Pt-ATMRP14.3
AT5G02070 Protein kinase family protein ... Potri.006G118500
[exp]
16.24 0.8883
AT5G42630 GARP KAN4, KANADI4, ... KANADI 4, ABERRANT TESTA SHAPE... Potri.014G037200
[exp]
17.08 0.8273
AT2G19130 S-locus lectin protein kinase ... Potri.019G119200
[exp]
20.78 0.8570
AT5G24470 APRR5 pseudo-response regulator 5 (.... Potri.012G005900
[exp]
21.00 0.8664
AT5G05190 Protein of unknown function (D... Potri.019G061400
[exp]
21.63 0.8619

Potri.011G072616 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.