Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29720 64 / 2e-12 Leucine-rich repeat transmembrane protein kinase (.1) AT1G29740 64 / 2e-12 Leucine-rich repeat transmembrane protein kinase (.1) AT1G29730 52 / 3e-08 Leucine-rich repeat transmembrane protein kinase (.1) AT1G07650 52 / 3e-08 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G53430 44 / 2e-05 Leucine-rich repeat transmembrane protein kinase (.1.2) AT5G01950 43 / 2e-05 Leucine-rich repeat protein kinase family protein (.1) AT1G06840 43 / 2e-05 Leucine-rich repeat protein kinase family protein (.1) AT1G53440 40 / 0.0002 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56130 39 / 0.001 Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G073016 [exp] 264 / 9e-84 AT1G29740 775 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G072591 [exp] 230 / 4e-71 AT1G29730 996 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G073166 [exp] 213 / 3e-66 AT1G29740 576 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G073241 [exp] 205 / 4e-62 AT1G29730 978 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G072941 [exp] 189 / 2e-56 AT1G29720 947 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G075400 [exp] 110 / 1e-28 AT1G29740 1012 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G073091 [exp] 107 / 7e-28 AT1G29740 944 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G072741 [exp] 107 / 1e-27 AT1G29740 1014 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G073341 [exp] 105 / 3e-27 AT1G29740 606 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031374 [exp] 71 / 6e-15 AT1G07650 1221 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Lus10010951 [exp] 69 / 4e-14 AT1G07650 979 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Lus10004061 [exp] 43 / 4e-05 AT5G01950 766 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10035605 [exp] 41 / 0.0001 AT5G01950 1126 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10003244 [exp] 40 / 0.0002 AT5G01950 1039 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10005550 [exp] 40 / 0.0002 AT1G53440 1223 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10041937 [exp] 40 / 0.0004 AT1G53440 1138 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.011G072641.1 pacid=42781724 polypeptide=Potri.011G072641.1.p locus=Potri.011G072641 ID=Potri.011G072641.1.v4.1 annot-version=v4.1 ATGAAAACTTATTCAAGCTTCTTTCCTACTCCTCCACCCAACATGTTCACGACGCTCCAGCCTCCGCATGGACTTCTTCAGTTTTGCCGAGTAATGGTGG TCGTGATCACTCTTTTCAGTTCTGCTACTTTGGTTGTCTCATATCAGTTACATCCAGACGAAGTGACGGCGTTAAGACAAATTGGCAAGACACTGACACC GGGTGGGCAACCCTTCGAGGTGGGCGATGCTTGCAACCAACCAGGAACTCTGCACGATATGAATCTGTCGAAAGATTCAGAAGCCAGTAGCACCGTCATG TGCAATTGCACCCTCAACCTCAATAATGATGGTTATTGTCATATCACGTCACTATATCTAAAAACGCTCAGTTTTTCAGGCGAGCTCCCGCCTGAAATGG CCAACCTTACATATCTTGAAATTATGTAA
AA sequence Show only first row Show all	>Potri.011G072641.1 pacid=42781724 polypeptide=Potri.011G072641.1.p locus=Potri.011G072641 ID=Potri.011G072641.1.v4.1 annot-version=v4.1 MKTYSSFFPTPPPNMFTTLQPPHGLLQFCRVMVVVITLFSSATLVVSYQLHPDEVTALRQIGKTLTPGGQPFEVGDACNQPGTLHDMNLSKDSEASSTVM CNCTLNLNNDGYCHITSLYLKTLSFSGELPPEMANLTYLEIM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G29720			Leucine-rich repeat transmembr...		Potri.011G072641 [exp]	0	1
AT4G16740		ATTPS03	terpene synthase 03 (.1.2)		Potri.019G023018 [exp]	1.00	0.8926
AT1G65480		FT	FLOWERING LOCUS T, PEBP (phosp...		Potri.010G179900 [exp]	5.65	0.8874
AT5G17220		GST26, TT19, AT...	TRANSPARENT TESTA 19, GLUTATHI...		Potri.017G138800 [exp]	6.92	0.8868	ATGSTF10.1
					Potri.003G189601 [exp]	8.94	0.8699
AT4G22880		TT18, TDS4, ANS...	TANNIN DEFICIENT SEED 4, ANTHO...		Potri.001G113100 [exp]	10.39	0.8636	Pt-ANS.1
AT1G66370	MYB	ATMYB113	myb domain protein 113 (.1)		Potri.017G125600 [exp]	12.72	0.8664
					Potri.012G134250 [exp]	12.96	0.6424
AT4G27310	CO		B-box type zinc finger family ...		Potri.004G026900 [exp]	13.30	0.6823
AT3G22840		ELIP1	EARLY LIGHT-INDUCABLE PROTEIN,...		Potri.008G157900 [exp]	14.49	0.8653
AT4G36970			Remorin family protein (.1)		Potri.007G044350 [exp]	15.49	0.8257

Compare expression of checked genes

Potri.011G072641 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.