Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29750 514 / 5e-174 RKF1 receptor-like kinase in flowers 1 (.1.2) AT1G53440 493 / 1e-165 Leucine-rich repeat transmembrane protein kinase (.1) AT1G53430 490 / 4e-165 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G07650 482 / 1e-161 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G53420 480 / 2e-161 Leucine-rich repeat transmembrane protein kinase (.1) AT3G14840 474 / 2e-158 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G29720 457 / 8e-152 Leucine-rich repeat transmembrane protein kinase (.1) AT1G29730 451 / 2e-150 Leucine-rich repeat transmembrane protein kinase (.1) AT1G29740 447 / 1e-147 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56140 365 / 1e-116 Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G072566 [exp] 811 / 0 AT1G29750 1210 / 0.0 receptor-like kinase in flowers 1 (.1.2) Potri.004G063500 [exp] 723 / 0 AT1G29750 1182 / 0.0 receptor-like kinase in flowers 1 (.1.2) Potri.004G063200 [exp] 542 / 0 AT1G29750 1019 / 0.0 receptor-like kinase in flowers 1 (.1.2) Potri.011G072300 [exp] 534 / 0 AT1G29750 1024 / 0.0 receptor-like kinase in flowers 1 (.1.2) Potri.001G385200 [exp] 531 / 1e-180 AT3G14840 1171 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Potri.011G073391 [exp] 525 / 5e-180 AT1G29730 893 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G072966 [exp] 529 / 1e-179 AT1G29740 1006 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G072866 [exp] 527 / 5e-179 AT1G29740 1024 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G072741 [exp] 527 / 7e-179 AT1G29740 1014 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005418 [exp] 612 / 0 AT1G29750 800 / 0.0 receptor-like kinase in flowers 1 (.1.2) Lus10015239 [exp] 608 / 0 AT1G29750 1189 / 0.0 receptor-like kinase in flowers 1 (.1.2) Lus10041937 [exp] 491 / 5e-166 AT1G53440 1138 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10031374 [exp] 490 / 2e-163 AT1G07650 1221 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Lus10005550 [exp] 483 / 9e-162 AT1G53440 1223 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10038153 [exp] 422 / 4e-138 AT1G53440 1046 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10031199 [exp] 395 / 4e-128 AT1G56130 1261 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10042505 [exp] 388 / 1e-124 AT1G53440 1013 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10026207 [exp] 331 / 2e-110 AT1G16670 541 / 0.0 Protein kinase superfamily protein (.1) Lus10042460 [exp] 327 / 6e-109 AT1G16670 536 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.011G072691.1 pacid=42782208 polypeptide=Potri.011G072691.1.p locus=Potri.011G072691 ID=Potri.011G072691.1.v4.1 annot-version=v4.1 ATGTTGGAGATCAGATTCTATTTTGCCGGAAAAGGGACAACAAGGATTCCTGATAGGGGAGTTTATGGTCCCATCATATCAGCCATCTCTGTATTTTCTG ATTTGAAAGTTTGTTCTAGTGGGAAAAAGAAGGGAACTGTTTATGTGGTTGTTGGAGCTGTTGGAGCATCATGCCTGGTTGCCATTATACTGGTAATTCT TTGGTGGAAAGGCAACTTGCCAGGAAAATTGCGCAGGAAAAGAGATGTCAAAGGACTTGATTTTCCAAAGGGAACATTTTCTCTGAAGCAAATTAGAGCT GCCACTAATGACTTTGATGCTTCTAATAAGATTGGAGAAGGTGGTTTTGGTCCTGTATACAAGGGTCAATTACCTGATGGCACTGTTATAGCAGTGAAGC AACTTTCATCAAAATCACGGCAAGGAAATCGTGAATTCTTAAATGAGATGGGCATGATTTCATGTTTGCAGCATCCGAATCTTGTCAAGCTGCATGGATG TTGCATTGAAAGTGATCAGTTATTATTGGTTTATGAGTACATGGAAAATAATAGTCTTGCCCGTGCTCTGTTTCGTCATGAAAACAATCAGCTTAATCTG GATTGGCCTACAAGGCTTAAGATCTGTATTGGGATAGCTAGAGGTCTAGCTTTTCTCCATGAAGAATCAAGACTTAAGATCGTTCACAGAGACATCAAAG CTACAAATGTGCTACTTGATGGGAATCTGAATCCTAAAATATCTGATTTTGGATTGGCTAGGCTTGATGAAGAAGAGAAGAGCCACATCAGCACCCGAGT TGCTGGAACTATAGGATATATGGCACCAGAATATGCACTATGGGGTTACTTGACTGACAAAGCAGATGTTTACAGTTTTGGGGTTGTTGCTTTGGAAATT ATTAGTGGGAAGAACAACAATAACTACATGCCAAGCAACAGCAGTTGTGTTTGTCTCTTAGATTGGGCCTGCCATTTGCAACAAAGTGGGAGTTTTATAG AGCTTGTTGATGAGACGTTAGGATCTGAAGTTCACATAGAAGAAGCAGAAACTATGGTTAAAGTAGCTCTCTTGTGTACAAATGCGTCCCCTACAGTTAG ACCTACAATGTCTGAGGTAGTGAGCATGCTTGAAGGACGAATGGCTGTTCCCAACACGCTTCCTGAACTGAGTTCATATACTGAAGATTTGATGTTCAAA GCCATGAGAGACCTCCGTCAGCATGAGCAAAGTCATAGATTCAGTGGGAGCCAAACACAAAAGTCAACCTCTATTCAAACTTTTAGCTCTTCATCTATAT CTGAGAACAGCAGTTATGAGAATCCTTGA
AA sequence Show only first row Show all	>Potri.011G072691.1 pacid=42782208 polypeptide=Potri.011G072691.1.p locus=Potri.011G072691 ID=Potri.011G072691.1.v4.1 annot-version=v4.1 MLEIRFYFAGKGTTRIPDRGVYGPIISAISVFSDLKVCSSGKKKGTVYVVVGAVGASCLVAIILVILWWKGNLPGKLRRKRDVKGLDFPKGTFSLKQIRA ATNDFDASNKIGEGGFGPVYKGQLPDGTVIAVKQLSSKSRQGNREFLNEMGMISCLQHPNLVKLHGCCIESDQLLLVYEYMENNSLARALFRHENNQLNL DWPTRLKICIGIARGLAFLHEESRLKIVHRDIKATNVLLDGNLNPKISDFGLARLDEEEKSHISTRVAGTIGYMAPEYALWGYLTDKADVYSFGVVALEI ISGKNNNNYMPSNSSCVCLLDWACHLQQSGSFIELVDETLGSEVHIEEAETMVKVALLCTNASPTVRPTMSEVVSMLEGRMAVPNTLPELSSYTEDLMFK AMRDLRQHEQSHRFSGSQTQKSTSIQTFSSSSISENSSYENP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G29750		RKF1	receptor-like kinase in flower...		Potri.011G072691 [exp]	0	1
AT1G02145		EBS4, ALG12	EMS-MUTAGENIZED BRI1\(BRASSINO...		Potri.002G139200 [exp]	2.00	0.8620
AT1G05430			unknown protein		Potri.008G154200 [exp]	7.48	0.7972
					Potri.010G031250 [exp]	9.59	0.8038
AT5G36930			Disease resistance protein (TI...		Potri.003G014200 [exp]	16.61	0.7984
AT3G09320			DHHC-type zinc finger family p...		Potri.016G100200 [exp]	18.49	0.7764
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Potri.014G036800 [exp]	18.49	0.7936
AT3G10140		RECA3	RECA homolog 3 (.1)		Potri.016G057700 [exp]	22.36	0.7891
AT1G18340			basal transcription factor com...		Potri.005G176600 [exp]	23.62	0.7764
AT1G04420			NAD(P)-linked oxidoreductase s...		Potri.015G042100 [exp]	24.00	0.7467
AT5G25270			Ubiquitin-like superfamily pro...		Potri.018G115500 [exp]	30.59	0.7515

Compare expression of checked genes

Potri.011G072691 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.