Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29740 1013 / 0 Leucine-rich repeat transmembrane protein kinase (.1) AT1G29730 1002 / 0 Leucine-rich repeat transmembrane protein kinase (.1) AT1G29720 963 / 0 Leucine-rich repeat transmembrane protein kinase (.1) AT1G29750 904 / 0 RKF1 receptor-like kinase in flowers 1 (.1.2) AT1G07650 899 / 0 Leucine-rich repeat transmembrane protein kinase (.1.2) AT3G14840 868 / 0 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G53420 850 / 0 Leucine-rich repeat transmembrane protein kinase (.1) AT1G53430 835 / 0 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G53440 835 / 0 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56140 644 / 0 Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G072966 [exp] 1870 / 0 AT1G29740 1006 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G073700 [exp] 1859 / 0 AT1G29740 1012 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G072866 [exp] 1849 / 0 AT1G29740 1024 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G075400 [exp] 1837 / 0 AT1G29740 1012 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G073466 [exp] 1834 / 0 AT1G29740 1018 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G073091 [exp] 1684 / 0 AT1G29740 944 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G072666 [exp] 1644 / 0 AT1G29740 926 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G073616 [exp] 1605 / 0 AT1G29740 908 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G073241 [exp] 1435 / 0 AT1G29730 978 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015239 [exp] 937 / 0 AT1G29750 1189 / 0.0 receptor-like kinase in flowers 1 (.1.2) Lus10031374 [exp] 889 / 0 AT1G07650 1221 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Lus10005550 [exp] 845 / 0 AT1G53440 1223 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10041937 [exp] 787 / 0 AT1G53440 1138 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10038153 [exp] 771 / 0 AT1G53440 1046 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10042505 [exp] 741 / 0 AT1G53440 1013 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10010951 [exp] 711 / 0 AT1G07650 979 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Lus10005418 [exp] 689 / 0 AT1G29750 800 / 0.0 receptor-like kinase in flowers 1 (.1.2) Lus10031199 [exp] 634 / 0 AT1G56130 1261 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10042460 [exp] 340 / 1e-107 AT1G16670 536 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0202 [poplar] [flax] GBD PF11721 [poplar] [flax] Malectin Malectin domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.011G072741.1 pacid=42781520 polypeptide=Potri.011G072741.1.p locus=Potri.011G072741 ID=Potri.011G072741.1.v4.1 annot-version=v4.1 ATGTTAATGATGTTTCAGCTTTGCCAAGTTATGGTGATATTGATCAGTTTCTCGAGCTCTATTACTTTGCTTGCTTCTGATCAGCTACATCCAGGAGAAG TTGAAGCGTTAAGACAAATCGGTAAGACAGTAAACAAGGATGGCCAACTATCCTTGAAGTTCGACGATCGTTGTCAACAGGAAGGAGTCGTTAAGGCAGT ACTGACTCCTGCTCCACCAAACTCAGAAGTGAACGGCACAAACGAATGTAACTGCAGCATCACTGATGATAATTACTGTCACATTACTTCATTCCAGCTC AAAGATTACAGTCTTCCAGGCAGGCTTCCTCCGGAATTGGCCAACCTTACTTATGTCCAAAAAATAGATTTCACTCGCAACTATCTATACGGCACAATTC CGGTGGAATGGGCTTCGATGAAAAATCTGTTTTTCATCTCGCTTACTGCAAATCGCTTGTCAGGAAATATTCCTGGACATTTGGGAAATTTTTCTGCCCT CACCTACTTGAGCCTTGAATCAAATCAGTTTTCTGGTGTTGTCCCACCTGAGCTTGGCAAGCTTGTCAACTTAAAAACTCTGATACTCTCCGGCAATAAG TTAGTGGGGACCTTGCCAGAGGAACTTGCGCAGATAAAAAACTTGAAGGATTTTCGCGTAAGTGATAATAATCTTAAAGGCACCGTACCCAAGTTCATTG GGAACTGGACTCAACTTCAAAGGCTTGAATTGTACGCGACTGGATTGCAAGGACCCATACCTCGTAAAATTTTTCATTTGGAAAAGTTGTCTGATTTGAG GATTACTGATATGCCTGGACCAGAGTTTCAGTTACCTAACGCGACGATTAAAAGGGATAACTTGGTTCTGAGGAACATCAATTTAACTGGAACAATCCCA GAAGACGCATGGAAAGTGGAAAAAACACTCGACTTAACTTTTAACAAGTTGGTTGGGGAGATTCCTCCTAATACAATACAACGACAGTTTACGTTTTTGA GTGGCAACAAGCTGACTGGAACAGTGCAAGACTCATTCCTCCAAAACAGCCAAAATCTTGATGTTTCGTACAATAACTTTTCACGGTCACCAAGATGCAG CGGCAGTAACGGGAATAATATAAACTGGTTTCGAAGCTCGTCCAGCTATAATAACTTAAGCGATCTTCTTCCATGCTCAGAGATATCTCGGTGCCCAAAA TATTATCGTTCATTCCATATAAACTGTGGTGGAAAAGATGTAAAGAATGAGAGAATCTGGTATGAAGGTGATCAAGATAGTGAAAGTAATGCTGCTGCAA GGAGTTATTACAAATCAGAATCAAACTGGGGATTCAGCAGCACAGGAGATTTCATGGATGATAAAAACTTCAATCATGACAGATATACGCTTCCATCAAA TTCTAATATTTCTCTGGTTGACTTTGGATTGTATACAACAGCACGCAGAGCTGCCATCTCTCTCACTTATTATGGATATTGTCTAGAAAATGGGGATTAC TCTGTCAGACTCCACTTTGCTGAGATACAATTCACAGATGAAAAACTGTACAACAAAGTTGGAAGGCGTGTTTTTGATATTTACATTCAGGGAATACAAG TGCGAAAGGATTTTAACTTTACAGAGGAAGCCAAAGGATCTAACAGAAATTTCACAAGAGCATTCAACACCACTGTGACAGACCGTACCCTGGAGATCCG ATTATACTGGGCTGGAAAAGGCACTACTAGCATTCCAACAAGAGGAAATTATGGTCCTCTAATTTCTGCTATATCCGTATGTTCAGGTAACAGAACTTAT TGTGAAGAACCTGAGGAAGCAAGTAAGAAACCTATTGTGATCGGAGTTGTCACTTCAGCAGCGTTCCTTATTCTCTTGGTAATGGGTGTCATTTATTGGA AGCTCTGCTATGGAGACAAATACACAAGAGAACGAGAGCTTAAAGGGCTAGATTTGAAAACTGGTTCCTTCACCTTGAGGCAGCTAAAAGCGGCCACAGA CAATTTCAATTCAGAAAACAAGATTGGAGAGGGTGGTTTTGGATCCGTATACAAGGGTGAATTAGCAGACGGTACTATTATTGCTGTTAAGCAGCTATCT CCAAAATCCAGGCAAGGAAACCGTGAATTTGTGAACGAAATAGGCATGATATCTTGTTTACAGCATCCCAATCTTGTAAGGCTTTATGGATGCTGTATTG AAGGAGACCAGTTGCTTCTGGTGTACGAGTACATGGAAAACAACTCCCTCTCTCGTGCACTTTTTGGAGCAGGTTCCGAAACAAGTGCTCTGATGCTGGA TTGGCCAACAAGATATAAGATATGTGTCGGAATAGCCAGAGGTTTAGCATTTCTCCATGAAGGATCAGCAATCAGGATTGTTCACAGGGACATTAAAGGT ACAAATGTATTACTGGACAAAGATCTAAATGCCAAGATATCAGACTTCGGACTAGCTAAGCTCAATGAAGAGGAGAACACTCATATTAGCACTCGAGTTG CTGGAACTATAGGATATATGGCTCCAGAATATGCACTATGGGGCTATCTAACAGATAAAGCAGATGTTTATAGTTTTGGGGTTGTCGCCTTAGAAATTGT CAGTGGAAAGAGCAACTCAAGTTACAGGCCAGAGAACGAAAATGTTTGTCTTCTTGACTGGGCCCATGTATTGCAAAAAAAGGGAAATTTAATGGAGATA GTGGACCCAAAGCTGCAGTCTGAATTCAACAAGGAAGAGGCTGAGAGGATGATCAAAGCGGCTCTCTTATGCACCAATGCATCTCCATCTCTAAGGCCTG CAATGTCAGAAGTGGTGAGCATGCTTGAAGGACAGACCAGCATCCAGGAGATGGTCTCAGATCCTAGCATTTATGGTGATGATTTACACTCCAAACTTCT CAAAGGCCACTATCAGCAAGTCAGAGAACAGAGTTTAAACAGCACACAAGACCTCTTTCCTCCATCTGATAAATCGTGGATTGGAAATTCCTCTACATCC GCCCATGATCTCTACCCCATCAATCCCGAGTCCATAAGTTTAAATCTCACTGAAACCTCGTCTTTAATTGAATAA
AA sequence Show only first row Show all	>Potri.011G072741.1 pacid=42781520 polypeptide=Potri.011G072741.1.p locus=Potri.011G072741 ID=Potri.011G072741.1.v4.1 annot-version=v4.1 MLMMFQLCQVMVILISFSSSITLLASDQLHPGEVEALRQIGKTVNKDGQLSLKFDDRCQQEGVVKAVLTPAPPNSEVNGTNECNCSITDDNYCHITSFQL KDYSLPGRLPPELANLTYVQKIDFTRNYLYGTIPVEWASMKNLFFISLTANRLSGNIPGHLGNFSALTYLSLESNQFSGVVPPELGKLVNLKTLILSGNK LVGTLPEELAQIKNLKDFRVSDNNLKGTVPKFIGNWTQLQRLELYATGLQGPIPRKIFHLEKLSDLRITDMPGPEFQLPNATIKRDNLVLRNINLTGTIP EDAWKVEKTLDLTFNKLVGEIPPNTIQRQFTFLSGNKLTGTVQDSFLQNSQNLDVSYNNFSRSPRCSGSNGNNINWFRSSSSYNNLSDLLPCSEISRCPK YYRSFHINCGGKDVKNERIWYEGDQDSESNAAARSYYKSESNWGFSSTGDFMDDKNFNHDRYTLPSNSNISLVDFGLYTTARRAAISLTYYGYCLENGDY SVRLHFAEIQFTDEKLYNKVGRRVFDIYIQGIQVRKDFNFTEEAKGSNRNFTRAFNTTVTDRTLEIRLYWAGKGTTSIPTRGNYGPLISAISVCSGNRTY CEEPEEASKKPIVIGVVTSAAFLILLVMGVIYWKLCYGDKYTRERELKGLDLKTGSFTLRQLKAATDNFNSENKIGEGGFGSVYKGELADGTIIAVKQLS PKSRQGNREFVNEIGMISCLQHPNLVRLYGCCIEGDQLLLVYEYMENNSLSRALFGAGSETSALMLDWPTRYKICVGIARGLAFLHEGSAIRIVHRDIKG TNVLLDKDLNAKISDFGLAKLNEEENTHISTRVAGTIGYMAPEYALWGYLTDKADVYSFGVVALEIVSGKSNSSYRPENENVCLLDWAHVLQKKGNLMEI VDPKLQSEFNKEEAERMIKAALLCTNASPSLRPAMSEVVSMLEGQTSIQEMVSDPSIYGDDLHSKLLKGHYQQVREQSLNSTQDLFPPSDKSWIGNSSTS AHDLYPINPESISLNLTETSSLIE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G29740			Leucine-rich repeat transmembr...		Potri.011G072741 [exp]	0	1
					Potri.004G213900 [exp]	1.41	0.9792
AT2G32390		GLR6, ATGLR3.5	glutamate receptor 3.5 (.1.2....		Potri.014G152400 [exp]	2.44	0.9734
AT5G38610			Plant invertase/pectin methyle...		Potri.003G086600 [exp]	3.16	0.9676
AT5G65940		CHY1	beta-hydroxyisobutyryl-CoA hyd...		Potri.018G004200 [exp]	5.65	0.9773
AT5G26230		MAKR1	membrane-associated kinase reg...		Potri.010G090500 [exp]	8.30	0.9326
AT5G65940		CHY1	beta-hydroxyisobutyryl-CoA hyd...		Potri.018G004150 [exp]	8.71	0.9689
AT1G02205		CER1	ECERIFERUM 1, Fatty acid hydro...		Potri.014G152900 [exp]	9.48	0.9580
AT5G01870			Bifunctional inhibitor/lipid-t...		Potri.016G135800 [exp]	11.53	0.9630
AT1G33540		SCPL18	serine carboxypeptidase-like 1...		Potri.001G312800 [exp]	13.41	0.9580
AT3G15850		JB67, FADB, ADS...	FATTY ACID DESATURASE B, fatty...		Potri.011G151700 [exp]	15.49	0.9624

Compare expression of checked genes

Potri.011G072741 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.