Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29750 153 / 1e-42 RKF1 receptor-like kinase in flowers 1 (.1.2) AT1G07650 121 / 2e-31 Leucine-rich repeat transmembrane protein kinase (.1.2) AT3G14840 111 / 4e-28 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G53430 108 / 3e-27 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G53420 108 / 4e-27 Leucine-rich repeat transmembrane protein kinase (.1) AT1G53440 105 / 7e-26 Leucine-rich repeat transmembrane protein kinase (.1) AT1G29720 89 / 2e-20 Leucine-rich repeat transmembrane protein kinase (.1) AT1G29730 89 / 3e-20 Leucine-rich repeat transmembrane protein kinase (.1) AT1G29740 83 / 3e-18 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56145 72 / 1e-14 Leucine-rich repeat transmembrane protein kinase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G072566 [exp] 294 / 3e-93 AT1G29750 1210 / 0.0 receptor-like kinase in flowers 1 (.1.2) Potri.004G063500 [exp] 252 / 9e-78 AT1G29750 1182 / 0.0 receptor-like kinase in flowers 1 (.1.2) Potri.011G072691 [exp] 144 / 7e-41 AT1G29750 514 / 2e-174 receptor-like kinase in flowers 1 (.1.2) Potri.004G063200 [exp] 145 / 7e-40 AT1G29750 1019 / 0.0 receptor-like kinase in flowers 1 (.1.2) Potri.011G072300 [exp] 140 / 6e-38 AT1G29750 1024 / 0.0 receptor-like kinase in flowers 1 (.1.2) Potri.011G073566 [exp] 127 / 4e-35 AT1G29740 262 / 1e-79 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G072741 [exp] 130 / 2e-34 AT1G29740 1014 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.004G135500 [exp] 129 / 4e-34 AT1G07650 1324 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Potri.011G073700 [exp] 128 / 9e-34 AT1G29740 1012 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005418 [exp] 196 / 5e-58 AT1G29750 800 / 0.0 receptor-like kinase in flowers 1 (.1.2) Lus10015239 [exp] 195 / 3e-57 AT1G29750 1189 / 0.0 receptor-like kinase in flowers 1 (.1.2) Lus10031374 [exp] 114 / 5e-29 AT1G07650 1221 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Lus10010951 [exp] 112 / 2e-28 AT1G07650 979 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Lus10042505 [exp] 90 / 2e-20 AT1G53440 1013 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10005550 [exp] 87 / 2e-19 AT1G53440 1223 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10038153 [exp] 82 / 6e-18 AT1G53440 1046 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10031199 [exp] 74 / 5e-15 AT1G56130 1261 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10041937 [exp] 53 / 8e-08 AT1G53440 1138 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10013714 [exp] 48 / 3e-06 AT1G72250 1098 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0202 [poplar] [flax] GBD PF11721 [poplar] [flax] Malectin Malectin domain
Representative CDS sequence Show only first row Show all	>Potri.011G072891.1 pacid=42780776 polypeptide=Potri.011G072891.1.p locus=Potri.011G072891 ID=Potri.011G072891.1.v4.1 annot-version=v4.1 ATGGATGATTATGATTACCAAAATACTCGTTATACTGTATCTCTGCAATCATCAACCATCCTTGAGTTATACCAAACAGCTCGCATATCCACAATTTCTC TTACCTATTTCCATTATTGCTTACAAAATGGGAACTACACAGTAAACCTTCACTTTGCAGAGATACAGTTCACTAAGAGCCACATCAGCACCCGAGTTGC TGGAACCATGTTAGTCACCACATATAACAGCTTAGGCAGGCGTATTTTTGACATTTATGTTCAGGTAAGTAGTCACTCTAATGTGAAACTCACATTTTTT TTGAAGTTGGAAGCAAGGACTACTTTGTCACAGGAAAGATTGGTTTGGAAAAGTTTCAATATTGAAGATGAGGTTGGCAGTGCTGAAAAGCCTGATAGGG GAGTTTATGGTCCCATCATATCAGCCATCTCTGTATTTTCTGATTTGAAAGTTTGTTCTAGTGGGAAAAAGAAGGGAATTGTTTATGTGGTTGTTGGAGC TGTTGGAGCATCATGCCTGGTTGCCATTATACTGGTAATTCTTTGGTGGGAAGGAAACTTGCCAGGAAAATTGTGCAGGAAAAGAGATGTCAAAGGACTT GATTTTCCAAAGGGAACATTTTCTCTGAAGCAAATTAGAGCTGCCACTAATGACATTTGCACGTGCTCTGTTTCGTCATGA
AA sequence Show only first row Show all	>Potri.011G072891.1 pacid=42780776 polypeptide=Potri.011G072891.1.p locus=Potri.011G072891 ID=Potri.011G072891.1.v4.1 annot-version=v4.1 MDDYDYQNTRYTVSLQSSTILELYQTARISTISLTYFHYCLQNGNYTVNLHFAEIQFTKSHISTRVAGTMLVTTYNSLGRRIFDIYVQVSSHSNVKLTFF LKLEARTTLSQERLVWKSFNIEDEVGSAEKPDRGVYGPIISAISVFSDLKVCSSGKKKGIVYVVVGAVGASCLVAIILVILWWEGNLPGKLCRKRDVKGL DFPKGTFSLKQIRAATNDICTCSVSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G29750		RKF1	receptor-like kinase in flower...		Potri.011G072891 [exp]	0	1
					Potri.004G170442 [exp]	2.82	0.9165
					Potri.006G238566 [exp]	15.13	0.7841
AT4G02550			unknown protein		Potri.011G163248 [exp]	15.36	0.8873
AT4G02550			unknown protein		Potri.009G022650 [exp]	19.33	0.8812
AT2G02250		ATPP2-B2	phloem protein 2-B2 (.1)		Potri.018G016000 [exp]	20.63	0.8836
AT5G36930			Disease resistance protein (TI...		Potri.006G283600 [exp]	21.00	0.8835
					Potri.017G020864 [exp]	22.13	0.8813
AT4G02550			unknown protein		Potri.007G059900 [exp]	22.22	0.8584
AT2G01818			PLATZ transcription factor fam...		Potri.010G103500 [exp]	23.83	0.8099
AT3G14470			NB-ARC domain-containing disea...		Potri.012G121725 [exp]	26.72	0.8759

Compare expression of checked genes

Potri.011G072891 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.