Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29730 488 / 5e-160 Leucine-rich repeat transmembrane protein kinase (.1) AT1G07650 484 / 9e-158 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G29720 478 / 2e-155 Leucine-rich repeat transmembrane protein kinase (.1) AT1G29740 467 / 1e-150 Leucine-rich repeat transmembrane protein kinase (.1) AT1G53430 465 / 1e-150 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G53440 466 / 2e-150 Leucine-rich repeat transmembrane protein kinase (.1) AT1G53420 454 / 4e-147 Leucine-rich repeat transmembrane protein kinase (.1) AT3G14840 441 / 5e-141 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G29750 404 / 2e-127 RKF1 receptor-like kinase in flowers 1 (.1.2) AT1G56130 365 / 2e-112 Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G072941 [exp] 799 / 0 AT1G29720 947 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G072591 [exp] 795 / 0 AT1G29730 996 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G073241 [exp] 790 / 0 AT1G29730 978 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G073366 [exp] 771 / 0 AT1G07650 661 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Potri.011G073391 [exp] 736 / 0 AT1G29730 893 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G072741 [exp] 722 / 0 AT1G29740 1014 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G072866 [exp] 717 / 0 AT1G29740 1024 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G073066 [exp] 709 / 0 AT1G07650 488 / 1e-164 Leucine-rich repeat transmembrane protein kinase (.1.2) Potri.011G073466 [exp] 709 / 0 AT1G29740 1018 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041937 [exp] 470 / 3e-153 AT1G53440 1138 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10005550 [exp] 468 / 1e-151 AT1G53440 1223 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10005418 [exp] 461 / 3e-151 AT1G29750 800 / 0.0 receptor-like kinase in flowers 1 (.1.2) Lus10031374 [exp] 463 / 2e-148 AT1G07650 1221 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Lus10015239 [exp] 454 / 2e-146 AT1G29750 1189 / 0.0 receptor-like kinase in flowers 1 (.1.2) Lus10038153 [exp] 421 / 4e-133 AT1G53440 1046 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10042505 [exp] 411 / 4e-129 AT1G53440 1013 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10031199 [exp] 377 / 6e-117 AT1G56130 1261 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10026207 [exp] 322 / 7e-103 AT1G16670 541 / 0.0 Protein kinase superfamily protein (.1) Lus10042460 [exp] 320 / 1e-102 AT1G16670 536 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0202 [poplar] [flax] GBD PF11721 [poplar] [flax] Malectin Malectin domain
Representative CDS sequence Show only first row Show all	>Potri.011G072991.1 pacid=42781778 polypeptide=Potri.011G072991.1.p locus=Potri.011G072991 ID=Potri.011G072991.1.v4.1 annot-version=v4.1 ATGAATCTGTCGAAACAAGATTCAGAAGCCAATAGCACCGTCATGTGCAATTGCACCCTCAACCTCAATAATGATGTTGTAGTATGGATAGCCCATTTTT TAATAGATTGGATACATTGGATCAAATATAATCTTCCAGGCAAGCTCCCGCCTGAAATAGCCAACCTTACATATCTTGAAATTCTTGACCTATCTCGCAA CTCCATTTCTGGCAATATTCCTGAGGAATGGGCTTCAATGAAACATTTGACAAACCTCTCACTTACATCCAATCGCTTGTCAGGAAATATTCCTGGGTAC TTGGGAAGTTTTCGTAGCCTGACTTACTTGTCCCTTGAAGCAAATCAGTTTTCTGGTACTATACCTTTTCAGCTTGGTGATCTTGTCAACGTAACAGTCC TGATACTTTCCTCCAATCAGTTGGAGGGAACCTTCCCAGAGACTCTCGCTAAGCTAAACTTGACTAATTTTCGTGCAAGTGATAATAATCTTAGTGGCAG AATACCTGATTTCATTGGGAACTGGAGTAATCTTGTTAGACTTGAATTATGCGCAAGTGGACTAGAAGGGCCCATACCTCCTGCCATTCTTTCTTTAGAG AAGCTGACAGATTTGGTTTTGCGAAACATCAATTTGACTGGTGTGATCCCAACAGATGTGTGGAGATCGGATTTTCTGAAAACGCTGCAAGTGACATTGC CTCTAATTGTTTTATCAAGCTCCATGAACTTGTCTTTATCTCCACACATGTGGTTGCTAGCTCAATTTTCTAGATACCACCAATTCTCTTTGCCTTGCAT TCTCTTATTATGCATTTATACTTCTATAGTATTCAATGCCAATGTGACAGACACTACCTTGGAGATCCGTTTATACTGGAATGGAAAAGGGACTACTTGC ATTCCAAAAAGAGGAAATTACGGTCCTCTTATTTCTGCAATAACTGTATGCTCAGGCATCCGTACTCAAATTGTTTTCTTGGTAATGGGTGTCATTTGTT GGAAATTCTATTTTAGAGACAATGGGGATGGGGAGGCGGGCAGAACAGTGGAAGATCTCAAGGGGCTAGATCTGAAAACTGGTTCCTTCACTTTGAGGCA GCTGAGAGCTGCCACTAACAATTTTGATTCTGCTGGCAAAATTGGAGAAGGTGGATTTGGCTCCGTATACAAGGGTAAATTGTCAGATGGAACTCTCATT GCTGTTAAGCAGCTATCTCCTAAATCCAGGCAAGGAAACCGAGAATTTGTGAATGAAATAGGCATGATATCTGGTTTACAGCATCCCAATCTTGTAAAGC TTTATGGATGCTGTATTGAAGGAGATCAGTTGCTTCTGGTGTTCGAATACATGGAAAACAACTCCCTCGCCAAAGCACTTTTTGCTACAGGTTCAGAAAC AAGTTTTCTGATGCTGGATTGGCCAACAAGATATAAGATATGTGTTGGAATAGCCAGAGGTTTAGCATTTCTCCATGAAGAATCTGCAATCAGGATTGTT CACAGAGACATCAAAGATCTAAGTGCCAAGATATCAGACTTTGGACTAGCTAAGCTCAATGAAGAGGAGAACACTCACATTAGCACTCGTGTTGCTGGAA CCATAGGATATATGGCTCCAGAATATGCGCTGTGGGGTTATTTAACAGACAAAGCAGATGTTTATAGTTTTGGAGTTGTTGCTTTAGAAATTGTCAGTGG AAGAAGCAATTCGAGCTACAGGACAACAAATGAATTCGCCCATGTAGTGCAAAAAAAGGGAAATTTAATGGAGTTGGACCCAAAGCTGCAGTCTGAATTC AACAAGGAAGAGGCTGAGAGGATGATCAAATTGGCTCTCTTATGCACCAATGCATCTCCATCTCTAAGGCCTGCAATGTCAGAAGTGGTGAGCATGCTTG AAGGACAGACCAGCATCCAGGAGATGATCTCAGATCCTAGCATTTATGGTGATGATTTACACTCCAAACTTCTCAAAGGCCACTGTCAGCAGGTCATGGA CCAGAGTTTAAACAGCACACAAGACCTCTTTCCTCCTTCTGATAAATCATGGATTGGAAATTCCTCTACATCTGCCCATGATCTTTACCCCATCAATCCC GAACCTGTGTATAAAGCTTGGGGGGCAGAAAGAAATACGCATAAATTATGTCCAGCGTTTAATTCCAACCCCTTTCTTGCCGAATCAGTCCTTCCTCACA AACACAGCCCTCTCCACCGGCACCGTCATCTTGCCTCCTCCATTCACTTCCTCTCACCAAAACCTGCCGTAGCCAGCCATTAA
AA sequence Show only first row Show all	>Potri.011G072991.1 pacid=42781778 polypeptide=Potri.011G072991.1.p locus=Potri.011G072991 ID=Potri.011G072991.1.v4.1 annot-version=v4.1 MNLSKQDSEANSTVMCNCTLNLNNDVVVWIAHFLIDWIHWIKYNLPGKLPPEIANLTYLEILDLSRNSISGNIPEEWASMKHLTNLSLTSNRLSGNIPGY LGSFRSLTYLSLEANQFSGTIPFQLGDLVNVTVLILSSNQLEGTFPETLAKLNLTNFRASDNNLSGRIPDFIGNWSNLVRLELCASGLEGPIPPAILSLE KLTDLVLRNINLTGVIPTDVWRSDFLKTLQVTLPLIVLSSSMNLSLSPHMWLLAQFSRYHQFSLPCILLLCIYTSIVFNANVTDTTLEIRLYWNGKGTTC IPKRGNYGPLISAITVCSGIRTQIVFLVMGVICWKFYFRDNGDGEAGRTVEDLKGLDLKTGSFTLRQLRAATNNFDSAGKIGEGGFGSVYKGKLSDGTLI AVKQLSPKSRQGNREFVNEIGMISGLQHPNLVKLYGCCIEGDQLLLVFEYMENNSLAKALFATGSETSFLMLDWPTRYKICVGIARGLAFLHEESAIRIV HRDIKDLSAKISDFGLAKLNEEENTHISTRVAGTIGYMAPEYALWGYLTDKADVYSFGVVALEIVSGRSNSSYRTTNEFAHVVQKKGNLMELDPKLQSEF NKEEAERMIKLALLCTNASPSLRPAMSEVVSMLEGQTSIQEMISDPSIYGDDLHSKLLKGHCQQVMDQSLNSTQDLFPPSDKSWIGNSSTSAHDLYPINP EPVYKAWGAERNTHKLCPAFNSNPFLAESVLPHKHSPLHRHRHLASSIHFLSPKPAVASH

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G29730			Leucine-rich repeat transmembr...		Potri.011G072991 [exp]	0	1
AT1G29730			Leucine-rich repeat transmembr...		Potri.011G072591 [exp]	1.00	0.9872
AT1G07650			Leucine-rich repeat transmembr...		Potri.011G073366 [exp]	2.44	0.9782
AT3G25180		CYP82G1	cytochrome P450, family 82, su...		Potri.004G106600 [exp]	3.87	0.9666
AT1G29740			Leucine-rich repeat transmembr...		Potri.011G073166 [exp]	6.92	0.9629
AT5G23730		EFO2, RUP2	REPRESSOR OF UV-B PHOTOMORPHOG...		Potri.012G140200 [exp]	8.12	0.9376
AT5G04530		KCS19	3-ketoacyl-CoA synthase 19 (.1...		Potri.013G120100 [exp]	10.95	0.9773
AT1G29450			SAUR-like auxin-responsive pro...		Potri.004G181500 [exp]	13.78	0.9750
AT3G24450			Heavy metal transport/detoxifi...		Potri.018G076400 [exp]	14.79	0.9327
AT5G01870			Bifunctional inhibitor/lipid-t...		Potri.016G136000 [exp]	14.89	0.9747	Pt-LTP2.2
AT1G23080		PIN7, ATPIN7	ARABIDOPSIS PIN-FORMED 7, Auxi...		Potri.014G146800 [exp]	16.73	0.8843	PIN15

Compare expression of checked genes

Potri.011G072991 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.