Plant FIBer expression Database

Potri.011G073216 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G142940
[exp]
99 / 1e-27 ND /
Potri.001G108450
[exp]
91 / 8e-24 ND /
Potri.006G166850
[exp]
79 / 7e-20 ND /
Potri.010G007877
[exp]
0 / 1 ND /
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.011G073216.1 pacid=42782309 polypeptide=Potri.011G073216.1.p locus=Potri.011G073216 ID=Potri.011G073216.1.v4.1 annot-version=v4.1
ATGGCAGTTAAAGGAGGAAAACAGAGGGGAAGAGAAGAACGGCAACCTCTCTCTGCTCTCTCCCTCCACTGTTTGGAAGTACACCGCCACCTTCCTGACC
ACCGTGAGGCATCGCCAGCTTCCTCCCAACACCACCAGATTCTCCCCCACGATCCAGCAGCTTCTCTTAAGACCAGCCTCCACCGAACCCCACAGCAGCA
GCAACCATTTTCTTCTCAGCAGTTCCTTCTCCTCCAGCGGTGCAACGAAGCAGCAGCCCACGGGAAAACAGAGAAGGAGCAGGAACAAAAACAGAGGGAA
GAACGCCATCGCCAGCTCATCATATTCTTCATCCCAGCAGCCACGCCAAGAACTGTTGAGAGGGGAATACAGAAGAGAAGAACAGGAAGGAAACGGAGAA
GGGAGGAGAACATGAAAAATAAAAAGGAATGGAGGGAGACATGA
AA sequence
>Potri.011G073216.1 pacid=42782309 polypeptide=Potri.011G073216.1.p locus=Potri.011G073216 ID=Potri.011G073216.1.v4.1 annot-version=v4.1
MAVKGGKQRGREERQPLSALSLHCLEVHRHLPDHREASPASSQHHQILPHDPAASLKTSLHRTPQQQQPFSSQQFLLLQRCNEAAAHGKTEKEQEQKQRE
ERHRQLIIFFIPAATPRTVERGIQKRRTGRKRRREENMKNKKEWRET

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.011G073216
[exp]
0 1
Potri.001G108450
[exp]
1.73 0.9399
AT1G20140 ASK4 SKP1-like 4 (.1) Potri.009G135800
[exp]
2.23 0.9365 SKP1.4
AT1G14320 RPL10A, RPL10, ... SUPPRESSOR OF ACAULIS 52, ribo... Potri.013G159301
[exp]
3.46 0.9396
AT5G39850 Ribosomal protein S4 (.1) Potri.006G209900
[exp]
6.32 0.9224
AT2G20760 Clathrin light chain protein (... Potri.019G102000
[exp]
8.83 0.8523
Potri.002G048450
[exp]
12.00 0.9001
AT1G02810 Plant invertase/pectin methyle... Potri.002G202600
[exp]
12.24 0.8661
AT3G04400 EMB2171 embryo defective 2171, Ribosom... Potri.010G167700
[exp]
14.96 0.9279
AT4G33010 ATGLDP1 glycine decarboxylase P-protei... Potri.018G053720
[exp]
15.32 0.8675
AT2G39990 AteIF3f, EIF2 Arabidopsis thaliana eukaryoti... Potri.008G065500
[exp]
16.34 0.8477

Potri.011G073216 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.