Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29730 978 / 0 Leucine-rich repeat transmembrane protein kinase (.1) AT1G29740 964 / 0 Leucine-rich repeat transmembrane protein kinase (.1) AT1G29720 950 / 0 Leucine-rich repeat transmembrane protein kinase (.1) AT1G07650 892 / 0 Leucine-rich repeat transmembrane protein kinase (.1.2) AT3G14840 871 / 0 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G53420 859 / 0 Leucine-rich repeat transmembrane protein kinase (.1) AT1G29750 840 / 0 RKF1 receptor-like kinase in flowers 1 (.1.2) AT1G53440 810 / 0 Leucine-rich repeat transmembrane protein kinase (.1) AT1G53430 784 / 0 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G56140 670 / 0 Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G072591 [exp] 1852 / 0 AT1G29730 996 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G072941 [exp] 1799 / 0 AT1G29720 947 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G073391 [exp] 1608 / 0 AT1G29730 893 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G073016 [exp] 1536 / 0 AT1G29740 775 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G072741 [exp] 1448 / 0 AT1G29740 1014 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G072866 [exp] 1420 / 0 AT1G29740 1024 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G073466 [exp] 1404 / 0 AT1G29740 1018 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G072966 [exp] 1397 / 0 AT1G29740 1006 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G073700 [exp] 1392 / 0 AT1G29740 1012 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015239 [exp] 931 / 0 AT1G29750 1189 / 0.0 receptor-like kinase in flowers 1 (.1.2) Lus10031374 [exp] 878 / 0 AT1G07650 1221 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Lus10005550 [exp] 816 / 0 AT1G53440 1223 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10041937 [exp] 751 / 0 AT1G53440 1138 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10038153 [exp] 743 / 0 AT1G53440 1046 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10042505 [exp] 717 / 0 AT1G53440 1013 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10010951 [exp] 697 / 0 AT1G07650 979 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Lus10005418 [exp] 683 / 0 AT1G29750 800 / 0.0 receptor-like kinase in flowers 1 (.1.2) Lus10031199 [exp] 671 / 0 AT1G56130 1261 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10026207 [exp] 348 / 3e-110 AT1G16670 541 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0202 [poplar] [flax] GBD PF11721 [poplar] [flax] Malectin Malectin domain
Representative CDS sequence Show only first row Show all	>Potri.011G073241.1 pacid=42780497 polypeptide=Potri.011G073241.1.p locus=Potri.011G073241 ID=Potri.011G073241.1.v4.1 annot-version=v4.1 ATGTTCACGACGCTTCAGCCTCCGCATGGACTTCTTCAGTTATGCCGAGTTATGGTGGTCGTGATCACTCTTTTCAGTTCTGCTACTTTCAGTTCAGTTA TACCATATCAGTTACATCCAGACGAAGTGACGGCGTTAAGACAAATTGGCAAGACACTGACGCCGGGTGGGCAACCCTTCGAGGTGGGCGATGCTTGCAA CCAACCAGGAACTCTGCACGATATGAATCTGTTGAAACAAGATCCAAAAGCCAATAGCACCATCATATGCAGTTGCACCCTCATCCTCAATAATGATAGT TATTGTCATATCACGTCATTATCACTCAAAACGCTCAATCTTCAAGGCAAGCTCCCGTCTAAAATGGTCAACCTTGCATATCTTGAATTTCTTGACCTAA CTCGCAACTACATTTCTGGCAATATTCCTGAGGAATGGGCTTCAATGAAACATTTGACATACCTCTCCCTTACATCCAATCGCTTGTCAGGAAATATTCC TGGGTACTTGGGAAACTATCGCAGCCTGACTTACTTGTCCCTTGAAGCAAATCAGTTTTCTGGTACTATTCCTTATCAGCTTGGTGATCTTGTCAACTTA ACAGACCTGATACTTTCCTCCAATCAGTTGGAGGGAAACTTGCCAAATACTCTCACTAAGCTAAACTTGACTGATTTTCGTGCAAGTGATAATAATCTTA GTGGCAGAATACCTGATTTCATTGGGAACTGGAGTAATCTTGTTAGACTTGAATTATACGCAAGTGGACTAGAAGGACCCATACCTTGTGCCATTCTTTC TTTAGAGAAGTTGAGAGACTTGAGGATCACTGATATGTCTGGACCAGAGTCTAATTTACCCAACATCCCCCCCATAGTGAAAAATTTGGTTTTGCGAAAC ATCAATTTAACTGGAGTGATCCCAGGAGATGTGTGGACATCGGATTCTCTGAAAGTTCTGGATTTAACTTTCAACAAGTTGGAAGGAGACATTCCTCCAT ATGCAAAAACACGTGACTATATGTTTTTGAGTGGAAACAAGCTGAAGGGAAGTGTCCCAGACTCATTTCTCGAAACAGACAAAAATATTGATGTTTCCTA CAATAACTTTTCATGGCTGCCAAGCTGTCAAGATCATACCAGGGGTATAAACACGTACAGGAGTTCATTCATCAAGAATAACTTAAGCGGACTTCTTCCA TGCTCAAGCATACATGAGTGCCCCAAAAGTTATCGTTCATTCCATATAAACTGCGGTGGACCGGATTTAACCAGTGAGAGTATCTTGTATGAAGGTGACA GAAGCTTTGAAAGCACTAATGCTGCTACGATTTATTCCAAAGAAGGATCAAACTGGGGATTCAGCAACACAGGAGATTTTATGGATGATGATGGCCAAGG CCCCGGATATACACTTCCTTCAAACTACTCTTATTTCCCAACGGATACGGTGTATTCTACAGCACGCAGAGCTGCCATCTCTCTCACTTATTATGGATAT TGTCTAGAAAATGGGATGTACACTGTTAAACTCGACTTTGCTGAGATACAATTCACAGATGACGAATCGTACAAAAGAGTTGGAAAACGCTTTTTTGACA TTTATATTCAGGGGAAACTAGAGATAAAAGATTTTAATATCAAGGAGGCTGCTAAAGGATCTAACAAAACTTATTCTATAGAATTCAAAGCCAATGTGAC AGACAATACCTTGGAGATCCGTTTATACTGGAATGGAAAAGGGACTACTTGCATTCCACAAAGAGGAAATTACGGTCCTATTATTTCTGCAATAACTGTA TGCTCAGGCCAGAGTACTTATTGTCCAGAACCTGGAGAAGCAAGTAAAATACCTATCGTGGTTGGAGTTGTCACTTCAGCCTTACTCCTTGTTTTCTTGG TAATGGGTGTCATTTGTTGGAAATTCTATTTTAGAGACAAGTTCATGAGAGAACGAGATCTCAAGGGGCTAGATCTGAAAACTGGTTCCTTCACTTTGAG GCAGCTGAGAGCTGCCACTAACAATTTTGATTCTGCTGACAAAATTGGAGAAGGTGGATTTGGCTCCGTATACAAGGGTAAATTGTCAGATGGAACTCTT ATTGCTGTTAAGCAGCTATCTCCTAAATCCAGGCAAGGAAACCGAGAATTTGTGAATGAAATAGGCATGATATCTGGTTTACAGCATCCCAATCTTGTAA AGCTTTATGGATGCTGTATTGAAGGAGATCAGTTGCTTCTGGTGTACGAATACATGGAAAACAACTCCCTCGCCAAAGCACTTTTTGCTACAGGTTCAGA AACAAGTTTTCTGATGCTGGATTGGCCAACAAGATATAAGATATGTGTTGGAATAGCCAGAGGTTTAGCATTTCTCCATGAAGAATCTGCAATCAGGATT GTTCACAGAGACATCAAAGGTACAAATGTATTACTGGACAAAGATCTAAGTGCCAAGATATCAGACTTTGGACTAGCTAAGCTCAATGAAGAGGAGAACA CTCACATTAGCACTCGTGTTGCCGGAACCATAGGATATATGGCTCCAGAATATGCGCTGTGGGGTTATTTAACAGACAAAGCAGATGTTTATAGTTTTGG AGTTGTTGCTTTAGAAATTGTCAGTGGAAGAAGCAATTCGAGTTACAGGACAACAAATGAATTCGTATGTCTTCTTGACTGGGCCCATGTAGTGCAAAAA AAGGGAAATTTAATGGAGATGGTGGACCCAAAGCTGCAGTCTGAATTCAACAAGGAAGAGGCTGAGAGGATGATCAAATTGGCTCTCTTATGCACCAATG CATCTCCATCTCTAAGGCCTGCAATGTCAGAAGTGGTGAGCATGCTTGAAGGACAGACCAGCATCCAGGAGATGATCTCAGATCCTAGCATTTATGGTGA TGATTTACACTCCAAACATCTCAAAGGCCACTATCAGCAGGTCATGGACCAGAGTTTAAACAGCAAACAAGACCTCTTTCCTCCATCTGATAAATCATGG ATTGGAAATTCCTCTACATCTGCCCATGATCTTTACCCCATCAATCCCGAGTCCATAAATTTAAACATCAGTGAAACCTCGTCTTTAATTGAATAA
AA sequence Show only first row Show all	>Potri.011G073241.1 pacid=42780497 polypeptide=Potri.011G073241.1.p locus=Potri.011G073241 ID=Potri.011G073241.1.v4.1 annot-version=v4.1 MFTTLQPPHGLLQLCRVMVVVITLFSSATFSSVIPYQLHPDEVTALRQIGKTLTPGGQPFEVGDACNQPGTLHDMNLLKQDPKANSTIICSCTLILNNDS YCHITSLSLKTLNLQGKLPSKMVNLAYLEFLDLTRNYISGNIPEEWASMKHLTYLSLTSNRLSGNIPGYLGNYRSLTYLSLEANQFSGTIPYQLGDLVNL TDLILSSNQLEGNLPNTLTKLNLTDFRASDNNLSGRIPDFIGNWSNLVRLELYASGLEGPIPCAILSLEKLRDLRITDMSGPESNLPNIPPIVKNLVLRN INLTGVIPGDVWTSDSLKVLDLTFNKLEGDIPPYAKTRDYMFLSGNKLKGSVPDSFLETDKNIDVSYNNFSWLPSCQDHTRGINTYRSSFIKNNLSGLLP CSSIHECPKSYRSFHINCGGPDLTSESILYEGDRSFESTNAATIYSKEGSNWGFSNTGDFMDDDGQGPGYTLPSNYSYFPTDTVYSTARRAAISLTYYGY CLENGMYTVKLDFAEIQFTDDESYKRVGKRFFDIYIQGKLEIKDFNIKEAAKGSNKTYSIEFKANVTDNTLEIRLYWNGKGTTCIPQRGNYGPIISAITV CSGQSTYCPEPGEASKIPIVVGVVTSALLLVFLVMGVICWKFYFRDKFMRERDLKGLDLKTGSFTLRQLRAATNNFDSADKIGEGGFGSVYKGKLSDGTL IAVKQLSPKSRQGNREFVNEIGMISGLQHPNLVKLYGCCIEGDQLLLVYEYMENNSLAKALFATGSETSFLMLDWPTRYKICVGIARGLAFLHEESAIRI VHRDIKGTNVLLDKDLSAKISDFGLAKLNEEENTHISTRVAGTIGYMAPEYALWGYLTDKADVYSFGVVALEIVSGRSNSSYRTTNEFVCLLDWAHVVQK KGNLMEMVDPKLQSEFNKEEAERMIKLALLCTNASPSLRPAMSEVVSMLEGQTSIQEMISDPSIYGDDLHSKHLKGHYQQVMDQSLNSKQDLFPPSDKSW IGNSSTSAHDLYPINPESINLNISETSSLIE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G29730			Leucine-rich repeat transmembr...		Potri.011G073241 [exp]	0	1
AT1G29720			Leucine-rich repeat transmembr...		Potri.011G072941 [exp]	1.00	0.9012
AT1G29740			Leucine-rich repeat transmembr...		Potri.011G073016 [exp]	5.00	0.8566
AT4G13010			Oxidoreductase, zinc-binding d...		Potri.001G342800 [exp]	5.47	0.8886
AT2G42130			Plastid-lipid associated prote...		Potri.016G045900 [exp]	11.83	0.8912
AT5G42850			Thioredoxin superfamily protei...		Potri.001G225500 [exp]	16.70	0.8357
AT2G37660			NAD(P)-binding Rossmann-fold s...		Potri.006G086800 [exp]	32.03	0.8441
AT5G57150	bHLH	bHLH035	basic helix-loop-helix (bHLH) ...		Potri.006G074800 [exp]	33.40	0.7778
AT5G04830			Nuclear transport factor 2 (NT...		Potri.010G241700 [exp]	44.11	0.8285
AT2G32040			Major facilitator superfamily ...		Potri.010G085900 [exp]	46.63	0.8101
AT1G18180			Protein of unknown function (D...		Potri.015G039900 [exp]	50.29	0.8318

Compare expression of checked genes

Potri.011G073241 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.