Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29740 531 / 1e-177 Leucine-rich repeat transmembrane protein kinase (.1) AT1G29730 523 / 3e-175 Leucine-rich repeat transmembrane protein kinase (.1) AT1G29720 467 / 3e-153 Leucine-rich repeat transmembrane protein kinase (.1) AT1G29750 454 / 4e-148 RKF1 receptor-like kinase in flowers 1 (.1.2) AT1G07650 401 / 3e-128 Leucine-rich repeat transmembrane protein kinase (.1.2) AT3G14840 392 / 1e-124 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G53420 374 / 2e-118 Leucine-rich repeat transmembrane protein kinase (.1) AT1G53430 348 / 9e-108 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G53440 344 / 2e-106 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56145 284 / 3e-84 Leucine-rich repeat transmembrane protein kinase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G075400 [exp] 1067 / 0 AT1G29740 1012 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G073341 [exp] 1063 / 0 AT1G29740 606 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G072966 [exp] 1058 / 0 AT1G29740 1006 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G073700 [exp] 1053 / 0 AT1G29740 1012 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G072866 [exp] 1019 / 0 AT1G29740 1024 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G072741 [exp] 1012 / 0 AT1G29740 1014 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G073466 [exp] 1004 / 0 AT1G29740 1018 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G073091 [exp] 984 / 0 AT1G29740 944 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G072666 [exp] 808 / 0 AT1G29740 926 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015239 [exp] 481 / 3e-159 AT1G29750 1189 / 0.0 receptor-like kinase in flowers 1 (.1.2) Lus10010951 [exp] 381 / 2e-121 AT1G07650 979 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Lus10031374 [exp] 379 / 9e-119 AT1G07650 1221 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Lus10005550 [exp] 368 / 2e-115 AT1G53440 1223 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10038153 [exp] 348 / 9e-108 AT1G53440 1046 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10042505 [exp] 347 / 5e-107 AT1G53440 1013 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10041937 [exp] 305 / 3e-92 AT1G53440 1138 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10031199 [exp] 260 / 1e-75 AT1G56130 1261 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10005418 [exp] 216 / 6e-61 AT1G29750 800 / 0.0 receptor-like kinase in flowers 1 (.1.2) Lus10004046 [exp] 134 / 1e-32 AT4G08850 773 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0202 [poplar] [flax] GBD PF11721 [poplar] [flax] Malectin Malectin domain
Representative CDS sequence Show only first row Show all	>Potri.011G073266.1 pacid=42782337 polypeptide=Potri.011G073266.1.p locus=Potri.011G073266 ID=Potri.011G073266.1.v4.1 annot-version=v4.1 ATGTTAATGATGTTTCAGCTTTGCCAGGTTATGGTGATGATCAGTTTCTCGAGCTCTATTACTTTGCTTGCTTCTGATCAGCTACATCCAGGAGAAGATG AAGCGTTAAGACAAATCGGTAAGACAGTAAACGAGGATGGCCAAATATCCTTGAAGTTCGTCGATAGTTGTCAACAGAAAGGAGTTGTTGAGACAGAACT GAATTCTGCTCCACCAAACTTAGAAGGGAACAGCACCATCGGATGTAACTGCAGCATCACTGATGATAATTACTGTCACATTACTTCATTCCTGCTCAAA GATTACAGTCTTCCAGGCAGGCTTCCTCCGGAATTGGCCAACCTTACTTATGTCAAAAAAATCGATTTTACTCGCAACTATATATACGGCACAATTCCGG TGGAATGGGCTTCGATGAAAAATCTGTCTTCCATCTCGCTTACTGCAAATCGCTTGTCAGGAAATATTCCTGGACATTTGGGAAGTTTTACTGCCCTCAC CTACTTGAGCCTTGAATCAAATCAGTTTTCTGGTGTTGTCCCACCTGAGCTTGGCGAGCTTGTCAGCTTAGAAACTCTGATACTCTCCGGCAATAAGTTA GTGGGGACCTTGCCAGAGGAACTTGCGCAGATAAAAAACTTGACGGATTTTCGCGTAAGTGATAATAATCTTAATGGCACCGTACCCGAGTTCATTGGGA AGTGGAATCAACTTCGAAAGCTTGAATTGTACGCGACTGGATTGCAAGGACCCATACCTCCTGCAATTTTTCATTTGGAAAAGTTGTCTGATTTGAGGAT TGCTGATATGCCTGGACCAGAGTTTCAGTTACCTAAAAAGCCGATTGAAAGGAAATACTTGGTTCTGAGGAACATCAATTTAACTGGAACAATCCCAGAA AACGCATGGAAAGTGGAAAAAACACTCGACTTAACTTTTAACAAGTTGGTTGGGGAGATTCCTCCTAATACAATACGACGACAGTTTACGTTTTTGAGTG GCAACAAGCTGACTGGAACAGTGCAAGACTCATTCCTCCAAAATAGCCCAAATCTCGATGTTTCGTACAATAACTTTTCACGGGCACCAAGATGCAACAG CAGTAACGAGAATAATATAAACTGGTTTCGAAGCTCGTCCAGCAATAATAAATTAAGCGATCTTCTTCCATGCTCAGAGATATCTCGGTGCCCAAAATAT TATCGTTCATTCCATATAAACTGTGGTGGACAAGATGTAAAGAATAGGAGAATCTGGTATGAAGGTGATAAAGGTAGTGAAAGTAATGCTGCTGCAAGGA GTTATTATAGATTAAGATCAAATAGGGGATTCAGCAGCACAGGAGATTTCATGGATGATGACAATTTCTATAATGACAAATATACGCTTCAATCAAATTC TAATCTGATTGACTCTGGATTGTATGCAACAGCACGTAAAACTCCCCTGTCTATCACTTATTATGGATATTGTCTAGAAAATGGGAATTACACTGTCAGA CTCCACTTTGCTGAGATAGAATTCACATATGAAAAACTGTACAACAAAGTTGCAAGGCGCGTTTTTGATATTTACATTCAGGGAATACAAGTGCAAAAGG TTTTTAACTTTACAGAGGAAGCCAAAGGATCTAACAGAAATTTCACAATACCATTCAACACCACCGTGACAGACCGTACCCTGGAGATCCGATTATACTG GGCTGGAAAAGGCACTACTGTCATTCCAATAAGAGGAAATTATGGTCCTATAATTTCTGCTATATCAGTATGTTACATGTTCTTTTTCTGCCTCTCATTT GAAACTTACAGACTTCAAGGAGTTTAA
AA sequence Show only first row Show all	>Potri.011G073266.1 pacid=42782337 polypeptide=Potri.011G073266.1.p locus=Potri.011G073266 ID=Potri.011G073266.1.v4.1 annot-version=v4.1 MLMMFQLCQVMVMISFSSSITLLASDQLHPGEDEALRQIGKTVNEDGQISLKFVDSCQQKGVVETELNSAPPNLEGNSTIGCNCSITDDNYCHITSFLLK DYSLPGRLPPELANLTYVKKIDFTRNYIYGTIPVEWASMKNLSSISLTANRLSGNIPGHLGSFTALTYLSLESNQFSGVVPPELGELVSLETLILSGNKL VGTLPEELAQIKNLTDFRVSDNNLNGTVPEFIGKWNQLRKLELYATGLQGPIPPAIFHLEKLSDLRIADMPGPEFQLPKKPIERKYLVLRNINLTGTIPE NAWKVEKTLDLTFNKLVGEIPPNTIRRQFTFLSGNKLTGTVQDSFLQNSPNLDVSYNNFSRAPRCNSSNENNINWFRSSSSNNKLSDLLPCSEISRCPKY YRSFHINCGGQDVKNRRIWYEGDKGSESNAAARSYYRLRSNRGFSSTGDFMDDDNFYNDKYTLQSNSNLIDSGLYATARKTPLSITYYGYCLENGNYTVR LHFAEIEFTYEKLYNKVARRVFDIYIQGIQVQKVFNFTEEAKGSNRNFTIPFNTTVTDRTLEIRLYWAGKGTTVIPIRGNYGPIISAISVCYMFFFCLSF ETYRLQGV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G29740			Leucine-rich repeat transmembr...		Potri.011G073266 [exp]	0	1
AT1G29740			Leucine-rich repeat transmembr...		Potri.011G073416 [exp]	12.40	0.6595
AT1G29730			Leucine-rich repeat transmembr...		Potri.011G073516 [exp]	18.33	0.6931
AT1G29740			Leucine-rich repeat transmembr...		Potri.011G072966 [exp]	19.05	0.6962
AT1G29740			Leucine-rich repeat transmembr...		Potri.011G073700 [exp]	19.23	0.6726
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Potri.004G026200 [exp]	28.98	0.6797
AT1G29730			Leucine-rich repeat transmembr...		Potri.011G073801 [exp]	34.35	0.6928
AT4G21410		CRK29	cysteine-rich RLK (RECEPTOR-li...		Potri.004G025425 [exp]	44.42	0.6493
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Potri.004G235500 [exp]	61.08	0.6162
AT5G24910		ELA1, CYP714A1	EUI-like p450 A1, cytochrome P...		Potri.010G116300 [exp]	72.45	0.5552
AT1G25330	bHLH	HAF, bHLH075, C...	HALF FILLED, CESTA, basic heli...		Potri.017G115300 [exp]	84.94	0.6148

Compare expression of checked genes

Potri.011G073266 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.