Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07650 491 / 1e-165 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G29730 484 / 1e-163 Leucine-rich repeat transmembrane protein kinase (.1) AT1G29720 473 / 8e-159 Leucine-rich repeat transmembrane protein kinase (.1) AT1G53430 471 / 4e-158 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G53440 471 / 1e-157 Leucine-rich repeat transmembrane protein kinase (.1) AT1G29740 456 / 2e-151 Leucine-rich repeat transmembrane protein kinase (.1) AT3G14840 451 / 7e-150 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G53420 444 / 4e-148 Leucine-rich repeat transmembrane protein kinase (.1) AT1G29750 417 / 5e-137 RKF1 receptor-like kinase in flowers 1 (.1.2) AT1G56130 361 / 2e-115 Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G073466 [exp] 761 / 0 AT1G29740 1018 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G072741 [exp] 753 / 0 AT1G29740 1014 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G072866 [exp] 750 / 0 AT1G29740 1024 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G073516 [exp] 738 / 0 AT1G29730 644 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G072666 [exp] 737 / 0 AT1G29740 926 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G073700 [exp] 729 / 0 AT1G29740 1012 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G072966 [exp] 729 / 0 AT1G29740 1006 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G072591 [exp] 725 / 0 AT1G29730 996 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G073241 [exp] 723 / 0 AT1G29730 978 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031374 [exp] 474 / 1e-157 AT1G07650 1221 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Lus10005418 [exp] 461 / 1e-156 AT1G29750 800 / 0.0 receptor-like kinase in flowers 1 (.1.2) Lus10041937 [exp] 463 / 1e-155 AT1G53440 1138 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10005550 [exp] 462 / 1e-154 AT1G53440 1223 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10015239 [exp] 454 / 7e-152 AT1G29750 1189 / 0.0 receptor-like kinase in flowers 1 (.1.2) Lus10038153 [exp] 424 / 3e-139 AT1G53440 1046 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10042505 [exp] 387 / 1e-124 AT1G53440 1013 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10031199 [exp] 382 / 2e-123 AT1G56130 1261 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10042460 [exp] 345 / 9e-117 AT1G16670 536 / 0.0 Protein kinase superfamily protein (.1) Lus10026207 [exp] 344 / 5e-116 AT1G16670 541 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.011G073316.1 pacid=42781875 polypeptide=Potri.011G073316.1.p locus=Potri.011G073316 ID=Potri.011G073316.1.v4.1 annot-version=v4.1 ATGCGCGTAGTGCATGGATATATGATGTTCAAGCATTTCTATTATTTCACGATATGTCTCCTGACTGTCATCCTCCCATACCAACTGCTGCGTGCAGAGC TTAAAGGGCTAGATTTGAAAACTGGTTCCTTCACCTTGAAGCAGCTAAAAGCGGCCTCTGACAATTTCAATTCAGCAAACAAGATTGGAGAGGGTGGTTT TGGATCCGTATACAAGGGTGAATTGGCAGACGGTACTATTATTGCTGTTAAGCAGCTATCTCCAAAATCCAGGCAAGGAAACCGTGAATTTGTGAACGAA ATAGGCATGATATCTTGTTTACAGCATCCCAATCTTGTAAGGCTTTATGGATGCTGTATTGAAGGAGACCAGTTGCTTCTGGTGTACGAGTACATGGAAA ACAACTCCCTCTCTCGTGCACTTTTCGGAGCAGGTTCCGAAACAAGTTTTCTGACGTTGGATTGGCCTACAAGGTATAAGATATGTGTTGGAATAGCCAG AGGTTTAGCATTTCTCCATGAAGGATCTGCAATCAGGATCGTTCACAGGGACATCAAAGGTACAAATGTATTACTGGACAAAGATCTAAATGCCAAGATA TCAGACTTCGGTCTAGCTAAGCTCAATGAAGAGGAGAACACTCATATTAGCACTCGAGTTGCTGGAACTATAGGATATATGGCTCCAGAATATGCACTGT GGGGCTATCTAACAGATAAAGCAGATGTTTATAGTTTTGGGGTTGTCGCCTTAGAAATTGTCAGTGGAAAGAGCAACTCAAGTTACAGGCCAGAGAACGA AAATGTTTGTCTTCTTGACTGGGCTCATGTATTGCAAAAAAAGGAAAATTTAATGGAGATAGTGGACCCAAAGCTGCAGTCTGAATTCAACAAGGAAGAG GCTGAGAGGATGATCAAGTTGGCTCTCTTATGCACCAATGCATCTCCATCTCTAAGGCCTGCAATGTCAGAAGTGGTGAGCATGCTTGAAGGACAGACCA GCATCCAGGAGATGATCTCAGATCCTAGCATTTATGGTGATGATTTACACTCCAAACATCTCAAAGGCCACTATCAGCAGGTCATGGACCAGAGTTTAAA CAGCACACAAGACCTCTTTCCTCGATCTGATAAATCGTGGATTGGAAATTCCTCTACATCTGCCCATGATCTCTACCCCATCAATCCCGAGTCCATAAGT TTAAACCTCAGTGAAACCTCGTCTTTAATTTGA
AA sequence Show only first row Show all	>Potri.011G073316.1 pacid=42781875 polypeptide=Potri.011G073316.1.p locus=Potri.011G073316 ID=Potri.011G073316.1.v4.1 annot-version=v4.1 MRVVHGYMMFKHFYYFTICLLTVILPYQLLRAELKGLDLKTGSFTLKQLKAASDNFNSANKIGEGGFGSVYKGELADGTIIAVKQLSPKSRQGNREFVNE IGMISCLQHPNLVRLYGCCIEGDQLLLVYEYMENNSLSRALFGAGSETSFLTLDWPTRYKICVGIARGLAFLHEGSAIRIVHRDIKGTNVLLDKDLNAKI SDFGLAKLNEEENTHISTRVAGTIGYMAPEYALWGYLTDKADVYSFGVVALEIVSGKSNSSYRPENENVCLLDWAHVLQKKENLMEIVDPKLQSEFNKEE AERMIKLALLCTNASPSLRPAMSEVVSMLEGQTSIQEMISDPSIYGDDLHSKHLKGHYQQVMDQSLNSTQDLFPRSDKSWIGNSSTSAHDLYPINPESIS LNLSETSSLI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G07650			Leucine-rich repeat transmembr...		Potri.011G073316 [exp]	0	1
AT1G29740			Leucine-rich repeat transmembr...		Potri.011G072866 [exp]	2.44	0.9115
AT1G07650			Leucine-rich repeat transmembr...		Potri.011G072841 [exp]	2.44	0.9056
AT5G14410			unknown protein		Potri.001G342100 [exp]	4.47	0.9210
AT1G12820		IPS1, AFB3	auxin signaling F-box 3 (.1)		Potri.004G033900 [exp]	5.00	0.9066
AT1G14440	ZF_HD	ATHB31, ZHD4	ZINC FINGER HOMEODOMAIN 4, hom...		Potri.002G035200 [exp]	8.94	0.9116
AT5G60900		RLK1	receptor-like protein kinase 1...		Potri.001G014401 [exp]	9.89	0.8899
AT1G75240	ZF_HD	ATHB33, ZHD5	zinc-finger homeodomain 5, hom...		Potri.007G024100 [exp]	10.72	0.8804
AT2G18350	ZF_HD	ATHB24, ZHD6	ZINC FINGER HOMEODOMAIN 6, hom...		Potri.005G227900 [exp]	12.32	0.9087
AT3G50180			Plant protein of unknown funct...		Potri.016G039800 [exp]	17.32	0.8940
AT2G30520		RPT2	ROOT PHOTOTROPISM 2, Phototrop...		Potri.013G159000 [exp]	17.74	0.8192	Pt-RPT2.4

Compare expression of checked genes

Potri.011G073316 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.